Import/Export Farsight-GoFigure results

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  Projects List

Key Investigators

• Harvard Medical School: Lydie Souhait, Arnaud Gelas, Sean Megason
• RPI: Kedar Grama, Raghav Padmanabhan, Badri Roysam

Project

Objective

• Exchange data (cell segmentation results) between Farsight and Gofigure2

Approach, Plan

• Discuss current status of both projects
• Define common objects/traces used by both projects
• Install both projects
• Export the data from both projects into textfiles
• Import the data from Farsight into Gofigure Database
• Import the data from Gofigure Database into Farsight

Progress

• Export Contours/Meshes from Gofigure2 into textfile done
• Import Contours/Meshes from textfile into Gofigure2 database done
• Import segmentation results from Farsight into Gofigurew done
• Import results from Gofigure2 into Farsight ~75% done

http://github.com/arnaudgelas/SegmentationToGoFigure2