Difference between revisions of "2008 Summer Project Week:DWIRegistrationOMT"
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(New page: {| |thumb|320px|Return to [[2008_Summer_Project_Week|Project Week Main Page ]] |} __NOTOC__ ===Key Investigators=== * Allen Tannenbaum, John Melonakos, Geo...) |
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|[[Image:ProjectWeek-2008.png|thumb|320px|Return to [[2008_Summer_Project_Week|Project Week Main Page]] ]] | |[[Image:ProjectWeek-2008.png|thumb|320px|Return to [[2008_Summer_Project_Week|Project Week Main Page]] ]] | ||
| + | |[[Image:Dwi_image_1.jpg | thumb | 300px | OMT Deformation Grid on MRI ]] | ||
| + | |[[Image:Dwi_image_2.jpg | thumb | 300px | OMT Deformation Grid on DWI ]] | ||
|} | |} | ||
| + | |||
__NOTOC__ | __NOTOC__ | ||
===Key Investigators=== | ===Key Investigators=== | ||
| − | * Allen Tannenbaum, John Melonakos | + | * Allen Tannenbaum, Tauseef ur Rehman, John Melonakos (Georgia Tech) |
| − | * Marek Kubicki | + | * Marek Kubicki, Sylvain Bouix (BWH) |
| − | + | ||
<div style="margin: 20px;"> | <div style="margin: 20px;"> | ||
| Line 15: | Line 18: | ||
<h1>Objective</h1> | <h1>Objective</h1> | ||
| − | * To | + | * To explore the portability of Optimal Mass Transport (OMT) Non-rigid Registration code to the NAMIC toolkit. |
| − | * To | + | * To determine applicability of OMT registration algorithm for DWI Distortion Correction. |
</div> | </div> | ||
| Line 22: | Line 25: | ||
<h1>Approach, Plan </h1> | <h1>Approach, Plan </h1> | ||
| − | + | ||
| + | * Conversations with Core 2 to analyze the project | ||
| + | * Discussions with Core 3 to see how to adapt the existing code for DWI Registration | ||
| + | * Make a project plan | ||
| + | |||
</div> | </div> | ||
| Line 28: | Line 35: | ||
<h1>Progress</h1> | <h1>Progress</h1> | ||
| − | Currently | + | * Currently the algorithm and registration framework is available in MATLAB |
| + | * Preliminary results with DWI baseline image correction. | ||
| + | * DWI and MRI image intensity normalization using CSF and White-Matter/Grey-Matter segmentations performed to make sure both image volumes are on same footing so that Mass Transport mapping is found without introducing structural distortions. | ||
| + | * Further experiments required to fine tune the normalization step. | ||
| + | * Slicer command line module created for interfacing with OMT Registration algorithm. A few issues with nrrd files being resolved. | ||
| + | * Discussions with Core 2 on existing infrastructure within ITK for non-rigid registration and re-use of demons diffeomorphic registration filter framework for OMT Registration filter. | ||
| + | |||
</div> | </div> | ||
| Line 36: | Line 49: | ||
===References=== | ===References=== | ||
| − | * [[Projects: | + | * [[Projects:OptimalMassTransportRegistration | Optimal Mass Transport Registration Project Page]] |
Latest revision as of 13:30, 27 June 2008
Home < 2008 Summer Project Week:DWIRegistrationOMT Return to Project Week Main Page |
Key Investigators
- Allen Tannenbaum, Tauseef ur Rehman, John Melonakos (Georgia Tech)
- Marek Kubicki, Sylvain Bouix (BWH)
Objective
- To explore the portability of Optimal Mass Transport (OMT) Non-rigid Registration code to the NAMIC toolkit.
- To determine applicability of OMT registration algorithm for DWI Distortion Correction.
Approach, Plan
- Conversations with Core 2 to analyze the project
- Discussions with Core 3 to see how to adapt the existing code for DWI Registration
- Make a project plan
Progress
- Currently the algorithm and registration framework is available in MATLAB
- Preliminary results with DWI baseline image correction.
- DWI and MRI image intensity normalization using CSF and White-Matter/Grey-Matter segmentations performed to make sure both image volumes are on same footing so that Mass Transport mapping is found without introducing structural distortions.
- Further experiments required to fine tune the normalization step.
- Slicer command line module created for interfacing with OMT Registration algorithm. A few issues with nrrd files being resolved.
- Discussions with Core 2 on existing infrastructure within ITK for non-rigid registration and re-use of demons diffeomorphic registration filter framework for OMT Registration filter.
