Difference between revisions of "User:Fedorov"
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| − | Andriy Fedorov is a Research Fellow of Radiology, Brigham and Women's Hospital and Harvard Medical School. | + | Andriy Fedorov is a Research Fellow of Radiology, Brigham and Women's Hospital and Harvard Medical School. He has PhD in Computer Science from the [http://www.cs.wm.edu/~fedorov College of William and Mary]. |
==Projects in NA-MIC== | ==Projects in NA-MIC== | ||
| − | * [http://www.na-mic.org/Wiki/index.php/ChangeTracker ChangeTracker] -- A 3D Slicer module for monitoring growth of meningioma tumors | + | * [http://www.na-mic.org/Wiki/index.php/ChangeTracker ChangeTracker] -- A 3D Slicer module for monitoring growth of meningioma tumors. |
| + | * [http://www.na-mic.org/Wiki/index.php/MeningiomaMRIRegistrationStudy Meningioma MRI registration] -- a ChangeTracker-motivated study of the available tools for rigid registration | ||
| + | * Registration parameter exploration | ||
| + | ** [http://www.gridwizardenterprise.org/guides/user-web.html GWE Web-based interface] | ||
| + | ** [http://wiki.na-mic.org/Wiki/index.php/GWE_MiniRetreat GWE Mini retreat]: scripts for exploring the results of parameter explorations | ||
| + | ** [http://wiki.na-mic.org/Wiki/index.php/GWEReallyQuickStartGuide GWE Really quick start guide] | ||
| + | * Meningioma growth modeling with TumorSim [[Meningioma growth modeling with TumorSim]] | ||
| + | * [[Vervet MRI registration]] | ||
| + | * [[ChangeTracker evaluation]] | ||
| + | * [[Issues to be resolved in Slicer 3.6]] | ||
| + | * [[Image registration with BRAINSFitIGT]] | ||
| + | * [[Projects:QIN:3D_Slicer_Annotation_Image_Markup]] | ||
| + | * [[OncoQuant DCE MRI Quantification: Reference documentation]] | ||
| + | * [[Projects:Iowa_Longitudinal_PETCT_Analysis_using_3DSlicer]] | ||
| + | * [[Projects:WIT_mold_holder]] | ||
| + | |||
| + | ==Misc notes== | ||
| + | * If you have a Harvard account, go to Google Scholar preferences, and add Harvard to the list of libraries it will link with your searches | ||
| + | * to run Slicer on Mac, start xquartz, then do "setenv DISPLAY :0" | ||
| + | * removing [http://wiki.na-mic.org/Wiki/index.php/Engineering:Subversion_Repository#Tabs_in_the_source_file tabs in the source file] | ||
| + | * add this "set autolist" to .cshrc for the tab to be more functional in the terminal | ||
| + | |||
| + | ==Links== | ||
| + | [https://intweb.bwh.harvard.edu/Dell_Linux_Cluster SPL Dell Linux cluster] | ||
| + | |||
| + | [https://intweb.spl.harvard.edu/Dell_Linux_Cluster/ClusterUsers Cluster user guide] | ||
| + | |||
| + | [http://groups.google.com/group/comp.protocols.dicom/browse_thread/thread/c1793167c99f7638?pli=1 gdcmanon] | ||
| + | |||
| + | [http://www.na-mic.org/Wiki/index.php/Engineering:Subversion_Repository Using NAMIC SVN] | ||
| + | |||
| + | [http://lib.harvard.edu.ezp-prod1.hul.harvard.edu/tools/libx.html Harvard LibX] | ||
| + | |||
| + | [[Media:November2009_FirstMondaySeminar_Fedorov.pdf|Nov 9, 2009 Slides for the First Monday Seminar on meningioma change detection]] | ||
| + | |||
| + | <pre> | ||
| + | Computers are useless. They can only give you answers. | ||
| + | -- Pablo Picasso | ||
| + | </pre> | ||
| + | |||
| + | ==Testing== | ||
| + | |||
| + | [[File:Slicer4-mpMRI_Prostate_scene.zip]] | ||
==Contact== | ==Contact== | ||
*Email: fedorov at bwh.harvard.edu | *Email: fedorov at bwh.harvard.edu | ||
Latest revision as of 16:49, 6 March 2013
Andriy Fedorov is a Research Fellow of Radiology, Brigham and Women's Hospital and Harvard Medical School. He has PhD in Computer Science from the College of William and Mary.
Projects in NA-MIC
- ChangeTracker -- A 3D Slicer module for monitoring growth of meningioma tumors.
- Meningioma MRI registration -- a ChangeTracker-motivated study of the available tools for rigid registration
- Registration parameter exploration
- GWE Web-based interface
- GWE Mini retreat: scripts for exploring the results of parameter explorations
- GWE Really quick start guide
- Meningioma growth modeling with TumorSim Meningioma growth modeling with TumorSim
- Vervet MRI registration
- ChangeTracker evaluation
- Issues to be resolved in Slicer 3.6
- Image registration with BRAINSFitIGT
- Projects:QIN:3D_Slicer_Annotation_Image_Markup
- OncoQuant DCE MRI Quantification: Reference documentation
- Projects:Iowa_Longitudinal_PETCT_Analysis_using_3DSlicer
- Projects:WIT_mold_holder
Misc notes
- If you have a Harvard account, go to Google Scholar preferences, and add Harvard to the list of libraries it will link with your searches
- to run Slicer on Mac, start xquartz, then do "setenv DISPLAY :0"
- removing tabs in the source file
- add this "set autolist" to .cshrc for the tab to be more functional in the terminal
Links
Nov 9, 2009 Slides for the First Monday Seminar on meningioma change detection
Computers are useless. They can only give you answers. -- Pablo Picasso
Testing
File:Slicer4-mpMRI Prostate scene.zip
Contact
- Email: fedorov at bwh.harvard.edu
