Difference between revisions of "Slicer3 Informatics Workflow Design & XNAT updates"
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<gallery> | <gallery> | ||
Image:PW2009-v3.png|[[2009_Summer_Project_Week|Project Week Main Page]] | Image:PW2009-v3.png|[[2009_Summer_Project_Week|Project Week Main Page]] | ||
+ | Image:FetchMISlicerInformatics1.png | Screen capture of FetchMI module | ||
+ | Image:FetchMISlicerRegistration.png | Screen capture of FetchMI module | ||
</gallery> | </gallery> | ||
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* WUSTL: Dan Marcus, Kevin Archie, Mikhail Milchenko | * WUSTL: Dan Marcus, Kevin Archie, Mikhail Milchenko | ||
* BWH: Ron Kikinis, Steve Pieper, Wendy Plesniak | * BWH: Ron Kikinis, Steve Pieper, Wendy Plesniak | ||
+ | * others who will join, please add your names! | ||
<div style="margin: 20px;"> | <div style="margin: 20px;"> | ||
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* Learn about new API for XNAT Desktop and XNAT Enterprise & how to integrate with Slicer | * Learn about new API for XNAT Desktop and XNAT Enterprise & how to integrate with Slicer | ||
* Design user-centered informatics workflow, including | * Design user-centered informatics workflow, including | ||
− | ** query, | + | ** '''query''', |
− | ** | + | ** results '''browsing''', |
− | ** authoring | + | ** authoring & applying metadata, |
− | ** load & save | + | ** consolidated load & save |
in Slicer, for XNAT and other data suppliers | in Slicer, for XNAT and other data suppliers | ||
− | + | ||
− | |||
− | |||
− | |||
</div> | </div> | ||
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<h3>Approach, Plan</h3> | <h3>Approach, Plan</h3> | ||
+ | |||
+ | * Fix fetchmi bugs (prior to Proj week) | ||
+ | * Work on adapting implementation to new API | ||
+ | * Discuss workflows to support '''search''' and '''browsing''' for 3 common kinds of studies: | ||
+ | ** Analysis of individual studies | ||
+ | ** Longitudinal studies | ||
+ | ** Population studies | ||
</div> | </div> | ||
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==References== | ==References== | ||
− | * [ | + | * [https://www.slicer.org/wiki/Modules:DataModule-3.4 Loading Data in Slicer3.4] |
− | * [ | + | * [https://www.slicer.org/wiki/Modules:Saving-Documentation-3.4 Saving Data in Slicer3.4] |
− | * [ | + | * [https://www.slicer.org/wiki/Modules:FetchMI-Documentation-3.4 FetchMI module in Slicer3.4] |
Latest revision as of 18:07, 10 July 2017
Home < Slicer3 Informatics Workflow Design & XNAT updates
Key Investigators
- WUSTL: Dan Marcus, Kevin Archie, Mikhail Milchenko
- BWH: Ron Kikinis, Steve Pieper, Wendy Plesniak
- others who will join, please add your names!
Objective
- Learn about new API for XNAT Desktop and XNAT Enterprise & how to integrate with Slicer
- Design user-centered informatics workflow, including
- query,
- results browsing,
- authoring & applying metadata,
- consolidated load & save
in Slicer, for XNAT and other data suppliers
Approach, Plan
- Fix fetchmi bugs (prior to Proj week)
- Work on adapting implementation to new API
- Discuss workflows to support search and browsing for 3 common kinds of studies:
- Analysis of individual studies
- Longitudinal studies
- Population studies
Progress