Difference between revisions of "NA-MIC NCBC Collaboration:Measuring Alcohol and Stress Interaction"
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− | Back to [[NA-MIC_External_Collaborations]] | + | Back to [[NA-MIC_External_Collaborations|NA-MIC External Collaborations]] |
==Abstract== | ==Abstract== | ||
Alcohol abuse continues to be a major problem in the United States with an estimated 14 million adults | Alcohol abuse continues to be a major problem in the United States with an estimated 14 million adults | ||
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==Grant#== | ==Grant#== | ||
− | R01AA016748 | + | [http://projectreporter.nih.gov/project_info_description.cfm?aid=7599715&icde=7475498 R01AA016748] |
==Key Personnel== | ==Key Personnel== | ||
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##[http://www.na-mic.org/Wiki/index.php/Image:EMSegment_TrainingTutorial.pdf Tutorial Slide Handouts (PDF)] | ##[http://www.na-mic.org/Wiki/index.php/Image:EMSegment_TrainingTutorial.pdf Tutorial Slide Handouts (PDF)] | ||
##[http://www.bsl.ece.vt.edu/data/vervet_atlas/vervet.php Vervet Atlas] | ##[http://www.bsl.ece.vt.edu/data/vervet_atlas/vervet.php Vervet Atlas] | ||
− | ##[ | + | ##[https://na-mic.org/w/images/c/c9/SlicerTutorialData_Vervet.tar.gz Example Data] |
#[http://bsl.ece.vt.edu/download/NHP-EMSTut.zip older Slicer2.x based tutorial] | #[http://bsl.ece.vt.edu/download/NHP-EMSTut.zip older Slicer2.x based tutorial] | ||
## [http://www.na-mic.org/Wiki/index.php/Image:EMSegment_Vervet_TrainingTutorial_Slicer2.pdf Vervet segmentation with Slicer2] (extracted from above for convenience) | ## [http://www.na-mic.org/Wiki/index.php/Image:EMSegment_Vervet_TrainingTutorial_Slicer2.pdf Vervet segmentation with Slicer2] (extracted from above for convenience) | ||
=== Nonhuman Primate Atlas Development === | === Nonhuman Primate Atlas Development === | ||
− | Vervet Probabalistic Atlas | + | * Vervet Probabalistic Atlas [http://www.nitrc.org/projects/vervet_atlas on NITRC] |
− | |||
Rhesus Probabalistic Atlas - Adult | Rhesus Probabalistic Atlas - Adult | ||
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# [[Proposed revised atlas construction workflow]] | # [[Proposed revised atlas construction workflow]] | ||
# [[Initial atlas construction workflow]] (initial workflow, obsolete) | # [[Initial atlas construction workflow]] (initial workflow, obsolete) | ||
− | # [[ | + | # [[October_08_2009_Meeting:_VT-NAMIC_Revised_atlas_construction_workflow | Current vervet monkey atlas construction workflow]] (in progress) |
+ | # [[NA-MIC WFU VT Collaboration: Segmentation workflow and approaches | Considered segmentation approaches and workflow]] (in progress) | ||
+ | # [[Smoothing multi-label brain segmentations]] | ||
==Publications== | ==Publications== | ||
+ | * Fedorov A., Li X., Pohl K.M., Bouix S., Styner M., Addicott M., Wyatt C., Daunais J.B., Wells III W.M., Kikinis R. [http://www.na-mic.org/publications/item/view/2119 Atlas-guided Segmentation of Vervet Monkey Brain MRI.] Open Neuroimag J. 2011 Dec;5:186-97. PMID: 22253661. PMCID: PMC3256578. | ||
+ | * NITRC Vervet Brain Atlas [http://www.nitrc.org/projects/vervet_atlas URL] | ||
+ | |||
==Meetings and Events Specific to this Collaboration== | ==Meetings and Events Specific to this Collaboration== | ||
− | *[[2007_Programming/Project_Week_MIT|2007 Summer Programming/Project Week at MIT]] | + | * [[2007_Programming/Project_Week_MIT|2007 Summer Programming/Project Week at MIT]] |
− | *[[AHM_2008|2008 NA-MIC AHM]] | + | * [[AHM_2008|2008 NA-MIC AHM]] |
− | *[[NA-MIC/Projects/External Collaboration/Measuring Alcohol and Stress Interaction|2008 NA-MIC Summer Project Week Page]] | + | * [[NA-MIC/Projects/External Collaboration/Measuring Alcohol and Stress Interaction|2008 NA-MIC Summer Project Week Page]] |
− | * 2009 NA-MIC Winter Project Week | + | * [[2009_Winter_Project_Week_WFU1|2009 NA-MIC Winter Project Week Page]] |
* [http://wiki.na-mic.org/Wiki/index.php/Measuring_Alcohol_Stress_Interaction 2009 Summer project week Boston] | * [http://wiki.na-mic.org/Wiki/index.php/Measuring_Alcohol_Stress_Interaction 2009 Summer project week Boston] | ||
* [http://wiki.na-mic.org/Wiki/index.php/Events:VT-NAMIC-NCBC-Collaboration-meeting-2009 2009 October 7-9 VT-NAMIC collaboration meeting] | * [http://wiki.na-mic.org/Wiki/index.php/Events:VT-NAMIC-NCBC-Collaboration-meeting-2009 2009 October 7-9 VT-NAMIC collaboration meeting] | ||
+ | * [[2010_Winter_Project_Week_VervetMRILongitudinalAnalysis|2010 NA-MIC Winter Project Week Page]] | ||
==Resource Links== | ==Resource Links== | ||
* [http://www.slicer.org 3D Slicer] | * [http://www.slicer.org 3D Slicer] | ||
* [http://www.bsl.ece.vt.edu Bioimaging Systems Lab at VT] | * [http://www.bsl.ece.vt.edu Bioimaging Systems Lab at VT] | ||
+ | * [http://pin.primate.wisc.edu/factsheets/entry/vervet Primate Info Net: Vervet factsheet] | ||
+ | * Short introduction to the [http://www.youtube.com/watch?v=pSm7BcQHWXk alcohol habits of vervets] :) |
Latest revision as of 18:27, 10 July 2017
Home < NA-MIC NCBC Collaboration:Measuring Alcohol and Stress InteractionBack to NA-MIC External Collaborations
Contents
Abstract
Alcohol abuse continues to be a major problem in the United States with an estimated 14 million adults meeting the clinical criteria for a diagnosis of alcohol abuse or alcoholism at an estimated cost of $185 billion. Chronic alcohol exposure has been shown to impact structure and function of the brain. Since most of what is known of alcohol's effects on the brain is based on studies of individuals who have abused for a long time, it is unclear whether some of the effects might occur early in the abuse process. Additionally, human studies are often complicated by many factors incuding polydrug abuse, poor nutritional states and other medical conditions. Another complicating factor is the interaction of stress and alcohol.
Using magnetic resonance imaging (MRI), we will examine the the effects of chronic alcohol self- administration on brain structure and function in a group of monkeys that have been mother-reared or nursery-reared. MRI scans will be acquired to determine whether there are differences in stucture or functions as a result of alcohol exposure and whether rearing conditions play a role in these effects. MRI techniques will also be used to examine how chronic alcohol consumption affects cerebral blood flow, which is a measure of neuronal activity. Because we will conduct these measures both before and after alcohol exposure in the same "young adult" animals, we will be able to track any changes that might occur early in alcohol abuse which is something that cannot be accomplished in human studies. Another goal is to adapt imaging tools and computer software that are used to measure the brains of humans to the monkey brain. To accomplish this, we will collaborate with the National Alliance for Medical Computing (NA-MIC), an existing NIH Center for Biomedical Computing.
We can control all variables associated with alcohol self-administration in these monkeys. They will be monitored both before and after exposure to alcohol, thus, we will be able to monitor the progression of any changes in structure or function that directly result from alcohol exposure. These studies will help identify how exposure to long-term alcohol might affect how the brain works.
Grant#
Key Personnel
- Wake Forest University: Jim Daunais, Bob Kraft
- Virginia Tech: Chris Wyatt, Vidya Rajagopalan, Xiaoxing(Ginger) Li, Xiaojing Long
- NA-MIC: Kilian Pohl, Sandy Wells, Andriy Fedorov
Funding Duration
07/15/2009-03/31/2010
Projects
Active projects in this collaboration are:
Tutorials on using EMSegmenter to segment nonhuman primate images
- Slicer3 based tutorial
- older Slicer2.x based tutorial
- Vervet segmentation with Slicer2 (extracted from above for convenience)
Nonhuman Primate Atlas Development
- Vervet Probabalistic Atlas on NITRC
Rhesus Probabalistic Atlas - Adult
Rhesus Probabalistic Atlas - Juvenile
Cyno Probabalistic Atlas - Adult
Segmentation
Documentation
- Atlas-to-subject registration with FSL and Diffeomorphic Demons, for EM segmentation.
- Atlas-to-subject registration with BRAINSFit
- On the performance of Slicer 2 and Slicer3 EM segmentation modules
- Proposed revised atlas construction workflow
- Initial atlas construction workflow (initial workflow, obsolete)
- Current vervet monkey atlas construction workflow (in progress)
- Considered segmentation approaches and workflow (in progress)
- Smoothing multi-label brain segmentations
Publications
- Fedorov A., Li X., Pohl K.M., Bouix S., Styner M., Addicott M., Wyatt C., Daunais J.B., Wells III W.M., Kikinis R. Atlas-guided Segmentation of Vervet Monkey Brain MRI. Open Neuroimag J. 2011 Dec;5:186-97. PMID: 22253661. PMCID: PMC3256578.
- NITRC Vervet Brain Atlas URL
Meetings and Events Specific to this Collaboration
- 2007 Summer Programming/Project Week at MIT
- 2008 NA-MIC AHM
- 2008 NA-MIC Summer Project Week Page
- 2009 NA-MIC Winter Project Week Page
- 2009 Summer project week Boston
- 2009 October 7-9 VT-NAMIC collaboration meeting
- 2010 NA-MIC Winter Project Week Page
Resource Links
- 3D Slicer
- Bioimaging Systems Lab at VT
- Primate Info Net: Vervet factsheet
- Short introduction to the alcohol habits of vervets :)