Difference between revisions of "2010 Winter Project Week TubularTreeSeg"
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<gallery> | <gallery> | ||
Image:PW-SLC2010.png|[[2010_Winter_Project_Week#Projects|Projects List]] | Image:PW-SLC2010.png|[[2010_Winter_Project_Week#Projects|Projects List]] | ||
| + | Image:MohanGT-TubSegSlicerModule-IntegrationResult1.png|Snapshot of Tubular Surface Segmentation framework as a Slicer module, and obtained result | ||
</gallery> | </gallery> | ||
==Key Investigators== | ==Key Investigators== | ||
| − | * | + | * Vandana Mohan, Allen Tannenbaum (Georgia Tech) |
| − | * | + | * Marek Kubicki (BWH) |
<div style="margin: 20px;"> | <div style="margin: 20px;"> | ||
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<h3>Progress</h3> | <h3>Progress</h3> | ||
| − | The algorithm is available in MATLAB with parts of the framework as C code (via mex). | + | * The algorithm is available in MATLAB with parts of the framework as C code (via mex). |
| + | * During winter project week 2010: Framework integrated into Slicer as MATLAB module. Tested for CB segmentation. (See above image for snapshot of module view and result from Slicer.) | ||
| + | * Next steps: Enable branching detection in framework, and test on vessel segmentation. | ||
</div> | </div> | ||
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==References== | ==References== | ||
| − | Tubular Surface Segmentation for extracting anatomical structures from medical imagery; Vandana Mohan, Ganesh Sundaramoorthi and Allen Tannenbaum; IEEE Transactions in Medical Imaging (in review) | + | "Tubular Surface Segmentation for extracting anatomical structures from medical imagery"; Vandana Mohan, Ganesh Sundaramoorthi and Allen Tannenbaum; IEEE Transactions in Medical Imaging (in review) |
</div> | </div> | ||
Latest revision as of 16:34, 8 January 2010
Home < 2010 Winter Project Week TubularTreeSeg
Snapshot of Tubular Surface Segmentation framework as a Slicer module, and obtained result
Key Investigators
- Vandana Mohan, Allen Tannenbaum (Georgia Tech)
- Marek Kubicki (BWH)
Objective
Implement a Slicer module for the Tubular Tree segmentation framework of Mohan et al.
Approach, Plan
Implement as a command-line module via integration of current MATLAB implementation.
Progress
- The algorithm is available in MATLAB with parts of the framework as C code (via mex).
- During winter project week 2010: Framework integrated into Slicer as MATLAB module. Tested for CB segmentation. (See above image for snapshot of module view and result from Slicer.)
- Next steps: Enable branching detection in framework, and test on vessel segmentation.
References
"Tubular Surface Segmentation for extracting anatomical structures from medical imagery"; Vandana Mohan, Ganesh Sundaramoorthi and Allen Tannenbaum; IEEE Transactions in Medical Imaging (in review)
