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*Status check on '''working groups''': | *Status check on '''working groups''': | ||
**[http://www.biositemaps.org Biositemaps] is a technology to address (i) locating, (ii) querying, (iii) composing or combining, and (iv) mining biomedical resources. The underlying technology for Biositemaps is the [http://bioportal.bioontology.org/visualize/40656 Biomedical Resource Ontology (BRO) V2.7.1] and the [http://biositemaps.bioontology.org/editor/ Information Model (IM) which is encapsulated in the Biositemaps Editor. Please try it out.] | **[http://www.biositemaps.org Biositemaps] is a technology to address (i) locating, (ii) querying, (iii) composing or combining, and (iv) mining biomedical resources. The underlying technology for Biositemaps is the [http://bioportal.bioontology.org/visualize/40656 Biomedical Resource Ontology (BRO) V2.7.1] and the [http://biositemaps.bioontology.org/editor/ Information Model (IM) which is encapsulated in the Biositemaps Editor. Please try it out.] | ||
| − | *** ([http://www.loni.ucla.edu/~dinov Ivo Dinov]) Biositemaps.RDF Extension facilitating resource execution, invocation, input/output and process control, and interoperability. | + | *** ([http://www.loni.ucla.edu/~dinov Ivo Dinov]) [https://na-mic.org/w/images/9/96/CCB_Supplement_Biositemaps_Pipeline_Report_2010.pdf Biositemaps.RDF Extension facilitating resource execution, invocation, input/output and process control, and interoperability]. |
| + | **** Example: CCB Biositemap.RDF | ||
| + | ***** [http://www.loni.ucla.edu/download/iTools/biositemap_NCBC_CCB.rdf Original (Standard RDF)] | ||
| + | ***** [https://na-mic.org/w/images/e/e8/Biositemap_NCBC_CCB_PL_update021610.rdf Extended Biositemap_NCBC_CCB_PL_update021610.rdf] | ||
| + | ***** [https://na-mic.org/w/images/1/16/Biositemap_NCBC_CCB_PL_update021610_ByRef.rdf Extended Biositemap_NCBC_CCB_PL_update021610_ByRef.rdf] (scalable by-reference version). | ||
| + | **** Example Pipeline workflows ([https://na-mic.org/w/images/3/3b/ND_WaveletTransform_WAIR.pipe.txt ND_WaveletTransform_WAIR.pipe], [https://na-mic.org/w/images/1/12/ShapeTransform.pipe.txt ShapeTransform.pipe], [https://na-mic.org/w/images/d/db/ShapeDistance.pipe.txt ShapeDistance.pipe]). | ||
| + | **** [http://pipeline.loni.ucla.edu/support/xml-overview/ Pipeline XML Invocation Protocol]. | ||
| + | **** [http://www.loni.ucla.edu/twiki/bin/view/CCB/ITools_BiositemapsPipelineWorkflows See also this page]. | ||
| + | **** [http://www.loni.ucla.edu/twiki/bin/view/CCB/ITools_ReleaseNotes#iTools_V_1_12_Excel_XLS_Biositem iTools/Biositemaps XLS Support] (pending validation). | ||
*** Plans for adoption within and beyond NCBCs: CTSA, NIF, NITRC,IMAG,... | *** Plans for adoption within and beyond NCBCs: CTSA, NIF, NITRC,IMAG,... | ||
** [[SDIWG:_NCBC_Scientific_Ontologies|Scientific Ontologies]] | ** [[SDIWG:_NCBC_Scientific_Ontologies|Scientific Ontologies]] | ||
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* '''Note taker''': [Suggested order of note takers for future meetings: '''Jags (this one)''', Dinov (next one), Murphy, Ku, Schroeder, Floratos, Rubenson] | * '''Note taker''': [Suggested order of note takers for future meetings: '''Jags (this one)''', Dinov (next one), Murphy, Ku, Schroeder, Floratos, Rubenson] | ||
* Review of [[SDIWG:Meeting_Minutes_20091120|November 20, 2009 Minutes]] | * Review of [[SDIWG:Meeting_Minutes_20091120|November 20, 2009 Minutes]] | ||
| − | * Attendees: | + | * Attendees: |
| − | + | Mark Musen | |
| − | + | Peter Good | |
| − | + | Peter Lyster | |
| − | + | Ivo Dinov | |
| − | + | Aaron Bookvich | |
| + | Anne Menkens | ||
| + | Aris Floratos | ||
| + | Csongor | ||
| + | David Rubenson | ||
| + | Jeanette | ||
| + | Jeassie Tenenbaum | ||
| + | Joy Ku | ||
| + | K P Unnikrishnan | ||
| + | Karen Skinner | ||
| + | Kevin Smith | ||
| + | Krishna (NIH) | ||
| + | Nanwei Cao | ||
| + | Sonia Pujol | ||
| + | Steve Pieper | ||
| + | Zhong Li | ||
| + | Zohara Cohen | ||
| − | + | Briefly: Ivo Dinov presented LONI from UCLA. He illustrated the LONI pipeline, including the graphical interface. He showed how tools can be integrated via LONI using simple extensions of biositemaps. | |
| − | + | This was followed by a brief presentation and discussion on NCBC Dissemination and shared calendar. | |
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| − | |||
| − | |||
| − | |||
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===Action Items=== | ===Action Items=== | ||
* TBD | * TBD | ||
Latest revision as of 18:27, 10 July 2017
Home < SDIWG:Meeting Minutes 20100219Contents
NCBC Joint Working Group Meeting
Notes
Friday February 19, 2010: 2:30-3:30 PM EST
Please contact Peter Lyster for information Peter Lyster
SDIWG Meetings Page
Save the date for the next SDWIG tcon/Connect, three months from now: May 21, 2010
Tcon DRAFT Agenda
- Roll Call/Note-taker (Jags) (5 min)
- Minutes from the last SDIWG tcon November 20, 2009 (5 min)
- Status check on working groups:
- Biositemaps is a technology to address (i) locating, (ii) querying, (iii) composing or combining, and (iv) mining biomedical resources. The underlying technology for Biositemaps is the Biomedical Resource Ontology (BRO) V2.7.1 and the Information Model (IM) which is encapsulated in the Biositemaps Editor. Please try it out.
- (Ivo Dinov) Biositemaps.RDF Extension facilitating resource execution, invocation, input/output and process control, and interoperability.
- Example: CCB Biositemap.RDF
- Original (Standard RDF)
- Extended Biositemap_NCBC_CCB_PL_update021610.rdf
- Extended Biositemap_NCBC_CCB_PL_update021610_ByRef.rdf (scalable by-reference version).
- Example Pipeline workflows (ND_WaveletTransform_WAIR.pipe, ShapeTransform.pipe, ShapeDistance.pipe).
- Pipeline XML Invocation Protocol.
- See also this page.
- iTools/Biositemaps XLS Support (pending validation).
- Example: CCB Biositemap.RDF
- Plans for adoption within and beyond NCBCs: CTSA, NIF, NITRC,IMAG,...
- (Ivo Dinov) Biositemaps.RDF Extension facilitating resource execution, invocation, input/output and process control, and interoperability.
- Scientific Ontologies
- NCBC Driving Biological Projects Interactions and Impact
- NCBC Dissemination and shared calendar: Dissemination page is at http://wiki.simtk.org/ncbcdisseminate/. The calendar is at http://www.ncbcs.org/cal.html with RSS feeds available for each center at http://www.ncbcs.org/summary-cal.html. Please check it out and provide feedback. (Joy)
- Biositemaps is a technology to address (i) locating, (ii) querying, (iii) composing or combining, and (iv) mining biomedical resources. The underlying technology for Biositemaps is the Biomedical Resource Ontology (BRO) V2.7.1 and the Information Model (IM) which is encapsulated in the Biositemaps Editor. Please try it out.
Minutes
- Note taker: [Suggested order of note takers for future meetings: Jags (this one), Dinov (next one), Murphy, Ku, Schroeder, Floratos, Rubenson]
- Review of November 20, 2009 Minutes
- Attendees:
Mark Musen Peter Good Peter Lyster Ivo Dinov Aaron Bookvich Anne Menkens Aris Floratos Csongor David Rubenson Jeanette Jeassie Tenenbaum Joy Ku K P Unnikrishnan Karen Skinner Kevin Smith Krishna (NIH) Nanwei Cao Sonia Pujol Steve Pieper Zhong Li Zohara Cohen
Briefly: Ivo Dinov presented LONI from UCLA. He illustrated the LONI pipeline, including the graphical interface. He showed how tools can be integrated via LONI using simple extensions of biositemaps. This was followed by a brief presentation and discussion on NCBC Dissemination and shared calendar.
Action Items
- TBD
