Difference between revisions of "Projects:RegistrationDocumentation:RegLibList"
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[[Projects:RegistrationDocumentation:UseCaseInventory|back to Library Main Page]] <br> | [[Projects:RegistrationDocumentation:UseCaseInventory|back to Library Main Page]] <br> | ||
| + | [[Image:under-construction_icon.jpg|right|100px|this page is under active development and is being updated regularly. Comments welcome to the slicer-users mailing list]] | ||
==Registration Case Inventory Brain== | ==Registration Case Inventory Brain== | ||
| − | *[[Image:RegUC2_thumb_t0.png|70px|lleft|RegLib C01: Tumor change assessment]] [[Image:RegUC2_thumb_t1.png|70px|lleft|RegLib C01: Tumor change assessment]] '''Case 01: [[Projects: | + | *[[Image:RegUC2_thumb_t0.png|70px|lleft|RegLib C01: Tumor change assessment]] [[Image:RegUC2_thumb_t1.png|70px|lleft|RegLib C01: Tumor change assessment]] '''Case 01: [[Projects:RegistrationLibrary:RegLib_C01|Intra-subject Brain MRI (Tumor growth assessment); ''' sagittal T1 with meningioma]] |
| − | *[[Image:RLib02_SPGR.png|70px|lleft|RegLib C02: MS multispectral alignment]] [[Image:RLib02_FLAIR_150.png|70px|lleft|RegLib C02: MS multispectral alignment]] '''Case 02: [[Projects: | + | *[[Image:RLib02_SPGR.png|70px|lleft|RegLib C02: MS multispectral alignment]] [[Image:RLib02_FLAIR_150.png|70px|lleft|RegLib C02: MS multispectral alignment]] '''Case 02: [[Projects:RegistrationLibrary:RegLib_C02|Intra-subject Brain MRI (Multiple Sclerosis); ''' T2 FLAIR to (defaced) T1 SPGR]] |
| − | *[[Image:Reglib_C04_Thumb_PD1.jpg|70px|lleft|RegLib C04: MS Lesion baseline]] [[Image:Reglib_C04_Thumb_PD2.jpg|70px|lleft|RegLib C04: MS Lesion follow-up]] '''Case 04: [[Projects: | + | *[[Image:Reglib_C04_Thumb_PD1.jpg|70px|lleft|RegLib C04: MS Lesion baseline]] [[Image:Reglib_C04_Thumb_PD2.jpg|70px|lleft|RegLib C04: MS Lesion follow-up]] '''Case 04: [[Projects:RegistrationLibrary:RegLib_C04|Intra-subject Brain MRI (Multiple Sclerosis).''' Aligning multiple follow-up exams of MS MRI for lesion change assessment ]] |
| + | *[[Image:RegLib_C14_Thumb_MRI.png|70px|lleft|RegLib 14: coronal MRI]] [[Image:RegLib_C14_Thumb_PET.png|70px|lleft|RegLib 14: PET]] '''Case 14: [[Projects:RegistrationLibrary:RegLib_C14|alignment of brain PET to structural MRI, with adjustments to MRI aspect ratio and orientation]]''' | ||
| + | *[[Image:RegLib_C15_Thumb.png|70px|lleft|RegLib C15: AC-PC alignment]] [[Image:RegLib_C15_Thumb.png|70px|lleft|RegLib C15: AC-PC alignment]]'''Case 15: [[Projects:RegistrationLibrary:RegLib_C15|Brain MRI reorientation along AC-PC line.''' Realigning a single brain MRI along the anterior-posterior commissure line]] | ||
| + | *[[Image:RegLib_C16_Brain0.png|70px|lleft|RegLib C16: Manual alignment]] [[Image:RegLib_C16_Brain1.png|70px|lleft|RegLib C16: Manual alignment]]'''Case 16: [[Projects:RegistrationLibrary:RegLib_C16|Manual alignment of multi-contrast brain MRI.''' manually align FLAIR MRI with anatomical reference T1]] | ||
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==Case Inventory DTI == | ==Case Inventory DTI == | ||
| − | *[[Image:RegLib_C03_Baseline_axial.png|70px|lleft|RegLib 03: DTI alignment]] [[Image:RegLib_C03_DTIVol_axial.png|70px|lleft|RegLib C03: DTI alignment]] '''Case 03: [[Projects: | + | *[[Image:RegLib_C03_Baseline_axial.png|70px|lleft|RegLib 03: DTI alignment]] [[Image:RegLib_C03_DTIVol_axial.png|70px|lleft|RegLib C03: DTI alignment]] '''Case 03: [[Projects:RegistrationLibrary:RegLib_C03|DWI alignment: align DTI volume with structural reference scan (T2)]]''' |
*[[Image:NAMIC logo.png|70px|lleft|RegLib Thumbnail placeholder]] [[Image:NAMIC logo.png|70px|lleft|RegLib Thumbnail placeholder]] Case ??: DTI baseline to T1 inter-subject with clipped FOV | *[[Image:NAMIC logo.png|70px|lleft|RegLib Thumbnail placeholder]] [[Image:NAMIC logo.png|70px|lleft|RegLib Thumbnail placeholder]] Case ??: DTI baseline to T1 inter-subject with clipped FOV | ||
*[[Image:NAMIC logo.png|70px|lleft|RegLib Thumbnail placeholder]] [[Image:NAMIC logo.png|70px|lleft|RegLib Thumbnail placeholder]] Case ??: [[DTI-non-rigid|DTI affine & non-rigid alignment]] | *[[Image:NAMIC logo.png|70px|lleft|RegLib Thumbnail placeholder]] [[Image:NAMIC logo.png|70px|lleft|RegLib Thumbnail placeholder]] Case ??: [[DTI-non-rigid|DTI affine & non-rigid alignment]] | ||
==Case Inventory fMRI == | ==Case Inventory fMRI == | ||
| − | *[[Image:RegLib C09 fMRI1.png|70px|lleft|RegLib 09: T1 SPGR]] [[Image:RegLib C09 fMRI2.png|70px|lleft|RegLib 09: fMR]] '''Case 09: [[Projects: | + | *[[Image:RegLib C09 fMRI1.png|70px|lleft|RegLib 09: T1 SPGR]] [[Image:RegLib C09 fMRI2.png|70px|lleft|RegLib 09: fMR]] '''Case 09: [[Projects:RegistrationLibrary:RegLib_C09|fMRI alignment to structural scan (T1)]]''' |
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==Case Inventory : Inter-Subject Structural MRI == | ==Case Inventory : Inter-Subject Structural MRI == | ||
| − | *[[Image:RegLib_C10_EMAtlas1.png|70px|lleft|Target Brain]] [[Image:RegLib_C10_EMAtlas2.png|70px|lleft|Probabilistic Tissue Atlas]] '''Case 10: [[Projects: | + | *[[Image:RegLib_C10_EMAtlas1.png|70px|lleft|Target Brain]] [[Image:RegLib_C10_EMAtlas2.png|70px|lleft|Probabilistic Tissue Atlas]] '''Case 10: [[Projects:RegistrationLibrary:RegLib_C10|Segmentation via co-registered probabilistic tissue atlas]]''' |
*[[Image:RegLib_C11_AtlasMerge_1.png|70px|lleft|Atlas 1 with thalamic nuclei]] [[Image:RegLib_C11_AtlasMerge_2.png|70px|lleft|Atlas 2 without thalamic nuclei]] '''Case 11: [[Projects:RegistrationDocumentation:RegLib_11_AtlasThalamicLabelMerge|Atlas label merging: Estimates of thalamic nuclei location via co-registered atlas]]''' | *[[Image:RegLib_C11_AtlasMerge_1.png|70px|lleft|Atlas 1 with thalamic nuclei]] [[Image:RegLib_C11_AtlasMerge_2.png|70px|lleft|Atlas 2 without thalamic nuclei]] '''Case 11: [[Projects:RegistrationDocumentation:RegLib_11_AtlasThalamicLabelMerge|Atlas label merging: Estimates of thalamic nuclei location via co-registered atlas]]''' | ||
*[[Image:NAMIC logo.png|70px|lleft|RegLib Thumbnail placeholder]] [[Image:NAMIC logo.png|70px|lleft|RegLib Thumbnail placeholder]] [http://ij.itk.org/midas/community/view/21 UNC Midas Database of healthy volunteers] | *[[Image:NAMIC logo.png|70px|lleft|RegLib Thumbnail placeholder]] [[Image:NAMIC logo.png|70px|lleft|RegLib Thumbnail placeholder]] [http://ij.itk.org/midas/community/view/21 UNC Midas Database of healthy volunteers] | ||
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*[[Image:RegLib_C10_EMAtlas1.png|70px|lleft|Target Brain]] [[Image:RegLib_C10_EMAtlas2.png|70px|lleft|Probabilistic Tissue Atlas]] '''Case 10: [[Projects:RegistrationDocumentation:RegLib_10_AtlasBasedSegmentation|Segmentation via co-registered probabilistic tissue atlas]]''' | *[[Image:RegLib_C10_EMAtlas1.png|70px|lleft|Target Brain]] [[Image:RegLib_C10_EMAtlas2.png|70px|lleft|Probabilistic Tissue Atlas]] '''Case 10: [[Projects:RegistrationDocumentation:RegLib_10_AtlasBasedSegmentation|Segmentation via co-registered probabilistic tissue atlas]]''' | ||
*[[Image:RegLib_C11_AtlasMerge_1.png|70px|lleft|Atlas 1 with thalamic nuclei]] [[Image:RegLib_C11_AtlasMerge_2.png|70px|lleft|Atlas 2 without thalamic nuclei]] '''Case 11: [[Projects:RegistrationDocumentation:RegLib_11_AtlasThalamicLabelMerge|Atlas label merging: Estimates of thalamic nuclei location via co-registered atlas]]''' | *[[Image:RegLib_C11_AtlasMerge_1.png|70px|lleft|Atlas 1 with thalamic nuclei]] [[Image:RegLib_C11_AtlasMerge_2.png|70px|lleft|Atlas 2 without thalamic nuclei]] '''Case 11: [[Projects:RegistrationDocumentation:RegLib_11_AtlasThalamicLabelMerge|Atlas label merging: Estimates of thalamic nuclei location via co-registered atlas]]''' | ||
| + | ==Case Inventory Abdominal == | ||
| + | *[[Image:RegLib C06 BreastMRIPostRx.png|70px|lleft|RegLib 06: Breast MRI]] [[Image:RegLib C06 BreastMRIPreRx.png|70px|lleft|RegLib 06: Breast MRI follow-up]] '''Case 06: [[Projects:RegistrationDocumentation:RegLib_06_BreastMRI|Breast MRI follow-up pre/post treatment with contrast enhancement and strong intensity inhomogeneity]]''' | ||
| + | *[[Image:RegLib C07 Prostate1.png|70px|lleft|RegLib 07: Prostate baseline]] [[Image:RegLib C07 Prostate2.png|70px|lleft|RegLib 07: Prostate follow-up]] '''Case 07: [[Projects:RegistrationDocumentation:RegLib_07_ProstateMRII|Prostate MRI follow-up , FOV change and strong intensity inhomogeneity]]''' | ||
| + | ==Case Inventory Muscuolskeletal == | ||
| + | *[[Image:RegLib C05 KneeMRI1.png|70px|lleft|RegLib 05: Knee MRI subject 1]] [[Image:RegLib C05 KneeMRI2.png|70px|lleft|RegLib 05: Knee MRI subject 2]] '''Case 05: [[Projects:RegistrationDocumentation:RegLib_05_KneeMRI|Inter-subject knee MRI with different FOV and aliasing]]''' | ||
| + | ==Case Inventory Whole Body PET/CT == | ||
| + | *[[Image:RegLib_C08_WholeBodyPET-CT1.png|70px|lleft|RegLib C08: PET-CT1]] [[Image:RegLib_C08_WholeBodyPET-CT1.png|70px|lleft|RegLib C08: : PET-CT2]] '''Case 08: [[Projects:RegistrationDocumentation:RegLib_08_WholeBodyPET-CT|Intra-subject PET-CT scan.''' Two exams each with a co-registered PET-CT dataset.]] | ||
Latest revision as of 16:36, 1 June 2010
Home < Projects:RegistrationDocumentation:RegLibList
Contents
Registration Case Inventory Brain
Case 01: Intra-subject Brain MRI (Tumor growth assessment); sagittal T1 with meningioma
Case 02: Intra-subject Brain MRI (Multiple Sclerosis); T2 FLAIR to (defaced) T1 SPGR
Case 04: Intra-subject Brain MRI (Multiple Sclerosis). Aligning multiple follow-up exams of MS MRI for lesion change assessment 
Case 14: alignment of brain PET to structural MRI, with adjustments to MRI aspect ratio and orientation
Case 15: Brain MRI reorientation along AC-PC line. Realigning a single brain MRI along the anterior-posterior commissure line
Case 16: Manual alignment of multi-contrast brain MRI. manually align FLAIR MRI with anatomical reference T1
Case Inventory DTI
Case 03: DWI alignment: align DTI volume with structural reference scan (T2)
Case ??: DTI baseline to T1 inter-subject with clipped FOV- Case ??: DTI affine & non-rigid alignment
Case Inventory fMRI
Case Inventory : Inter-Subject Structural MRI
Case 10: Segmentation via co-registered probabilistic tissue atlas
Case 11: Atlas label merging: Estimates of thalamic nuclei location via co-registered atlas- UNC Midas Database of healthy volunteers
Case Inventory Brain Atlas Registration
- Case 10: Segmentation via co-registered probabilistic tissue atlas
- Case 11: Atlas label merging: Estimates of thalamic nuclei location via co-registered atlas
Case Inventory Abdominal
Case 06: Breast MRI follow-up pre/post treatment with contrast enhancement and strong intensity inhomogeneity- RegLib 07: Prostate baseline RegLib 07: Prostate follow-up Case 07: Prostate MRI follow-up , FOV change and strong intensity inhomogeneity
