Difference between revisions of "SPIE2012 Slicer"

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Slicer4 binaries for the SPIE2012 course:
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Slicer4 binaries for the SPIE2012 course: [[SPIE_2012_DTI_Workshop | Go to event page]]
  
*Mac OSX 10.7 (Lion) - Tested Jan 23 : [https://www.ia.unc.edu/dev/download/Slicer/Slicer4.0.1_FiberAnalysis.zip Download here on UNC NIRAL site]
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Software
*Windows 7 (VS 2008)
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*Mac OSX 10.7 (Lion, 355.8 MB) - Tested Jan 31 : [http://slicer.kitware.com/midas3/item/305 Download at Slicer MIDAS]
*Linux 64
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*Windows 7 (VS 2008, 284.6 MB) : [http://slicer.kitware.com/midas3/item/310 Download at Slicer MIDAS]
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*Linux 64 (719.6 MB): [http://slicer.kitware.com/midas3/item/311 Download at Slicer MIDAS]
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Datasets
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*[http://hdl.handle.net/1926/1759 SPIE Workshop Dataset 1 (DICOM / QC example and DTI Atlas)] (464 MB)
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*[[media:DiffusionMRI_tutorialData.zip‎|SPIE Workshop Dataset 2 (Diffusion MRI analysis Pipeline)]] (64.6 MB)
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Tutorials
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# Fundamentals of DTI analysis (Guido Gerig) ([[media:DTI_intro_SPIE_NAMIC-Feb2012-small.pdf|Slides pdf 6Mb]]) ([[media:DTI_intro_SPIE_NAMIC-Feb2012-small.pptx|Slides pptx 6Mb]])
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# DICOM to NRRD conversion module [[media:2012-SPIE-DICOMToNRRDConversionTutorial.pptx‎ | PPTX ]] - [[ media:2012-SPIE-1-DICOMToNRRDConversionTutorial.pdf| PDF]]
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# DTIPrep module [[media:2012-SPIE-DTIQC.pptx‎ | PPTX]] - [[ media:2012-SPIE-2-DTIQC.pdf | PDF]]
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# Pairwise registration to atlas via DTI-Reg ([[media:2012-SPIE-DTI-Reg-Tutorial.pdf|Slides pdf: 3.4Mb)]]  / ([[media:2012-SPIE-DTI-Reg-Tutorial.pptx|Slides pptx: 14.9Mb)]]
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# FiberViewer Light module [[media:2012-SPIE-FiberViewerLightTutorial.pptx | PPTX]] - [[media:2012-SPIE-X-FiberViewerLightTutorial.pdf‎ | PDF]]
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# Fiber profile analysis module [[media:2012-SPIE-FiberAnalysis.pptx | PPTX]] - [[media:2012-SPIE-5-FiberAnalysis.pdf‎ |PDF]]
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#[http://www.na-mic.org/Wiki/index.php/File:DTI_Analysis_Tutorial_SoniaPujol.pdf Slicer DT-MRI Analysis tutorial]
  
 
Timeline
 
Timeline

Latest revision as of 23:16, 4 February 2012

Home < SPIE2012 Slicer

Slicer4 binaries for the SPIE2012 course: Go to event page

Software

Datasets

Tutorials

  1. Fundamentals of DTI analysis (Guido Gerig) (Slides pdf 6Mb) (Slides pptx 6Mb)
  2. DICOM to NRRD conversion module PPTX - PDF
  3. DTIPrep module PPTX - PDF
  4. Pairwise registration to atlas via DTI-Reg (Slides pdf: 3.4Mb) / (Slides pptx: 14.9Mb)
  5. FiberViewer Light module PPTX - PDF
  6. Fiber profile analysis module PPTX - PDF
  7. Slicer DT-MRI Analysis tutorial

Timeline

  • Jan 20: Martin sends 1-2 slides to Sonia for overview session
  • Jan 20: Linux and Mac binaries ready
  • Jan 27: windows binaries ready
  • Jan 27: all draft presentations ready
  • Jan 31: all tutorials tested on all platforms