Difference between revisions of "SPIE2012 Slicer"
From NAMIC Wiki
| (23 intermediate revisions by 5 users not shown) | |||
| Line 1: | Line 1: | ||
| − | Slicer4 binaries for the SPIE2012 course: | + | Slicer4 binaries for the SPIE2012 course: [[SPIE_2012_DTI_Workshop | Go to event page]] |
| − | *Mac OSX 10.7 (Lion) - Tested Jan | + | Software |
| − | *Windows 7 (VS 2008) | + | *Mac OSX 10.7 (Lion, 355.8 MB) - Tested Jan 31 : [http://slicer.kitware.com/midas3/item/305 Download at Slicer MIDAS] |
| − | *Linux 64 | + | *Windows 7 (VS 2008, 284.6 MB) : [http://slicer.kitware.com/midas3/item/310 Download at Slicer MIDAS] |
| + | *Linux 64 (719.6 MB): [http://slicer.kitware.com/midas3/item/311 Download at Slicer MIDAS] | ||
| − | + | Datasets | |
| − | * DTIPrep module [[media:2012-SPIE-DTIQC.pptx | | + | *[http://hdl.handle.net/1926/1759 SPIE Workshop Dataset 1 (DICOM / QC example and DTI Atlas)] (464 MB) |
| + | *[[media:DiffusionMRI_tutorialData.zip|SPIE Workshop Dataset 2 (Diffusion MRI analysis Pipeline)]] (64.6 MB) | ||
| + | |||
| + | Tutorials | ||
| + | # Fundamentals of DTI analysis (Guido Gerig) ([[media:DTI_intro_SPIE_NAMIC-Feb2012-small.pdf|Slides pdf 6Mb]]) ([[media:DTI_intro_SPIE_NAMIC-Feb2012-small.pptx|Slides pptx 6Mb]]) | ||
| + | # DICOM to NRRD conversion module [[media:2012-SPIE-DICOMToNRRDConversionTutorial.pptx | PPTX ]] - [[ media:2012-SPIE-1-DICOMToNRRDConversionTutorial.pdf| PDF]] | ||
| + | # DTIPrep module [[media:2012-SPIE-DTIQC.pptx | PPTX]] - [[ media:2012-SPIE-2-DTIQC.pdf | PDF]] | ||
| + | # Pairwise registration to atlas via DTI-Reg ([[media:2012-SPIE-DTI-Reg-Tutorial.pdf|Slides pdf: 3.4Mb)]] / ([[media:2012-SPIE-DTI-Reg-Tutorial.pptx|Slides pptx: 14.9Mb)]] | ||
| + | # FiberViewer Light module [[media:2012-SPIE-FiberViewerLightTutorial.pptx | PPTX]] - [[media:2012-SPIE-X-FiberViewerLightTutorial.pdf | PDF]] | ||
| + | # Fiber profile analysis module [[media:2012-SPIE-FiberAnalysis.pptx | PPTX]] - [[media:2012-SPIE-5-FiberAnalysis.pdf |PDF]] | ||
| + | #[http://www.na-mic.org/Wiki/index.php/File:DTI_Analysis_Tutorial_SoniaPujol.pdf Slicer DT-MRI Analysis tutorial] | ||
Timeline | Timeline | ||
Latest revision as of 23:16, 4 February 2012
Home < SPIE2012 SlicerSlicer4 binaries for the SPIE2012 course: Go to event page
Software
- Mac OSX 10.7 (Lion, 355.8 MB) - Tested Jan 31 : Download at Slicer MIDAS
- Windows 7 (VS 2008, 284.6 MB) : Download at Slicer MIDAS
- Linux 64 (719.6 MB): Download at Slicer MIDAS
Datasets
- SPIE Workshop Dataset 1 (DICOM / QC example and DTI Atlas) (464 MB)
- SPIE Workshop Dataset 2 (Diffusion MRI analysis Pipeline) (64.6 MB)
Tutorials
- Fundamentals of DTI analysis (Guido Gerig) (Slides pdf 6Mb) (Slides pptx 6Mb)
- DICOM to NRRD conversion module PPTX - PDF
- DTIPrep module PPTX - PDF
- Pairwise registration to atlas via DTI-Reg (Slides pdf: 3.4Mb) / (Slides pptx: 14.9Mb)
- FiberViewer Light module PPTX - PDF
- Fiber profile analysis module PPTX - PDF
- Slicer DT-MRI Analysis tutorial
Timeline
- Jan 20: Martin sends 1-2 slides to Sonia for overview session
- Jan 20: Linux and Mac binaries ready
- Jan 27: windows binaries ready
- Jan 27: all draft presentations ready
- Jan 31: all tutorials tested on all platforms
