Engineering:TCON 2012

Back to TCON:Main, Events

2012-12-27

Attendees: Jim, Steve, Nicole,

Agenda:

• talk about color hierarchies and model maker

2012-12-20

Attendees: Ron, Jim, Tina, Nicole, Steve, Sunil, Julien

Agenda:

• review project week projects: http://wiki.na-mic.org/Wiki/index.php/2013_Winter_Project_Week

2012-12-13

Attendees: Jim, Hans, Sunil, Tina, Nicole

Agenda:

• review project week projects: http://wiki.na-mic.org/Wiki/index.php/2013_Winter_Project_Week

2012-12-06

Attendees: Jim, Steve, Ron, Tina, Sunil Kumar (WashU), Dave, Kunlin

Agenda:

• review project week projects: http://wiki.na-mic.org/Wiki/index.php/2013_Winter_Project_Week

2012-11-27

Attendees: Steve, Jim, Tina, JC, Isaiah

Agenda:

• Are there any Slicer lung tumor segmentation (from CT) automated algorithms? suggested workflows? (Hugo Aerts, BWH Radiation Oncology)
  • Talk to Raul San Jose and James Ross at 1249 Boylston
  • Is there a lung lesion size tool at Kitware that will be incoporrated into Slicer (contact Rick Avila)?
  • ePad tool may be applicable? (http://epad.stanford.edu/)
• MRML code refactoring needed to improve response time (view this: https://www.youtube.com/watch?v=pf5cssbVALg where on the right is slicer with pnl/spl brain atlas loaded, and left is xtk with the same) (Tina Kapur, Isaiah Norton)

2012-11-15

Attendees: Steve, Tina, Sonia, Nicole, JC, Sunil, Kunlin

Agenda: Project Week Kick off call

• NCBC Meeting Update
• AHM+Project Week: http://wiki.na-mic.org/Wiki/index.php/AHM_2013
  • review/edit agenda esp. breakouts and extensions presentations
  • add engr projects
• RSNA prep

2012-11-07

No call. NCBC Showcase at NIH.

2012-11-01

Attendees: Jim, Ron, Nicole, Steve, Tina, Jc, ...

Agenda:

• NCBC Showcase mtg
• 4.2.1 development
  • crashes
  • MRB files + restoring scene views
  • annotations in lightboxes

2012-10-18

Attendees: Jim, Steve, Tina, Nicole, JC, Kunlin

Agenda:

• Discussion of SlicerHands experiments (movie) using the Microsoft Kinect and http://www.threegear.com threegear software. Sample slicer code is in the SlicerHands github repository.
• Discussion of recent changes to annotations and crosshairs (#2663 and #2664)
• RSNA Planning http://www.na-mic.org/Wiki/index.php/RSNA2012_Planning

2012-10-11

Attendees:

Agenda:

• RSNA Planning http://www.na-mic.org/Wiki/index.php/RSNA2012_Planning

2012-10-04

Attendees: Nicole, jc, guillaume, tina, dave, xiaojun

Agenda:

• RSNA Planning http://www.na-mic.org/Wiki/index.php/RSNA2012_Planning
• https://plus.google.com/hangouts/_/d1f84c048ebf04a7940139e16041015b45826b09?authuser=0&hl=en -- iGyne in Slicer 4

2012-09-27

Attendees: Jim, Steve, Nicole, JC, Tina, Kunlin, Dave

Agenda:

• Factory machine discussion
• RSNA Planning http://www.na-mic.org/Wiki/index.php/RSNA2012_Planning
• Bremen trip update

2012-09-20

Attendees:

Agenda:

• RSNA Planning http://www.na-mic.org/Wiki/index.php/RSNA2012_Planning

2012-09-13

Attendees: Steve, Ron, Tina, Stephen, Jim, Nicole, Kunlin, Jc

Agenda:

• Factory machine
• Annotations
• Extensions
• RSNA Planning http://www.na-mic.org/Wiki/index.php/RSNA2012_Planning

2012-09-06

Attendees: Steve, Sunil, Kunlin, Tina, Dave, Jim

Agenda:

• Discussion of XNAT module for slicer4 (Sunil)
  • General status and goals
  • Discussion of need for storage node for data transfer.
  • Project wiki.
  • Code repository (svn).

2012-08-30

Attendees: Jim, Steve, Nicole, J2, Ron

• Discussion of models hierarchy behavior

2012-08-23

Attendees: Tina, Jim, Steve, Rui, Andriy. nicole, dave, hans

• ITKv4 project discussion
  • Agreed to Start Slicer43 Project as a staging point while 4.2 is frozen

2012-08-16

Attendees: Tina, Andrey, Demian, Steve, Nicole, Sunil, Dave, Hans, Chen, Ron, Jim

• Including Pyxnat in Slicer build (Sunil Kumar from WUSTL will be calling in)
• Andrey would like to ask Jim if we can finalize linking modifier for slice / composite slice nodes https://github.com/fedorov/Slicer/tree/1772-linking-modifier

Discussion:

• http://na-mic.org/Bug/view.php?id=2352
• Other python requested:
  • pg8000 (pure python postgres interface) (can be done with pip) http://html.pg8000.googlecode.com/hg/index.html

PyXNAT users potential

• Hans, Jayashree, Murat, Andrey, Isaiah

NiPype

• Hans, Demian

2012-08-09

Attendees: Steve, Tina, Nicole

• Discussion of NAMIC impact

2012-08-02

Attendees:Steve, Nicole, Jim, Ron

• Jim and Steve talk about CTK & DICOM
  • clean build should fix it
• Nicole and Jim talk about PARSE_ARGS
  • Jim will take a look at emailed command line
• Ron and Nicole talk about model hierarchies
  • feature request to have a template hierarchy to fill in when running model maker (and more)

2012-07-26

Attendees:Steve, Nicole, Tina

• Reminder: Please put the NA-MIC logo on MICCAI slides and posters
• Image Guided Therapy Workshop in Boston, Sept 21: http://www.ncigt.org/pages/IGT_Workshop_2012

2012-07-19

Attendees: Jim, Dave, Nicole, Hans

Agenda:

• Please put the NA-MIC logo on MICCAI slides and posters
• Feature request to have mutually exclusive "sets" of parameters (radio button control that would enable/disable complete blocks of parameters)

2012-07-12

Attendees: Jim, Dave, Nicole

Agenda:

• Strategies for Qt widget development (CTK, Slicer, Python)
• CTK Hackfest

2012-07-05

Attendees: Jim, Steve, Dave, Nicole, JC, Julien

Agenda:

• volume loading
  • discussing refactor of AddArchetypeVolume
  • best way to read vector volumes?
  • Gordon wants us on the newest version of ITK first to update the NRRD readers
  • Julien wants to support mapping one extension to different types of extensions

2012-06-14

Attendees: Tina, Pete Anderson, Nicole Aucoin, Simrin, Guillaume, JC, Tyler, Nabgha, Yan, Steve Pieper, Jim

Agenda:

• Project Week last minute planning

2012-06-07

Attendees: Tina, Jim, Dave, Pete, Tomas, Andrash, Simrin, Samira, Saman, Nicole, Hans, Steven, Rui, Ron

Agenda:

• NIH Progress report comments
  • DBP comments and follow-up revisions
• Project week
  • Registration (currently ~50)
    • Hotel costs have been prohibitive this year
    • Suggestion - new location for Summer Project Week, earlier time of the year?
    • Airport hub
    • TODO: Discuss during Project Week
  • CARS & Project Week
    • Avoiding conflict may not be advantageous
    • TODO: Discuss during Project Week
  • AMIGO session: Saturday
  • Discussion of projects

2012-05-31

Attendees: Jim, Steve, Sonja, Nicole, Tamas, Hans, Anthony, Jerome, Peter, Tina, Rui, Tobias, Dave, Ron

Agenda:

• Project Week discussion http://wiki.na-mic.org/Wiki/index.php/2012_Summer_Project_Week
  • IGT Day
    • Tracker breakout session for Thursday?
    • Ultrasound moved to Thursday
  • Tutorial contest submissions
  • Discussion of projects

2012-05-24

Attendees: Jim, Steve, Emma, Peter Anderson, Markus, Rui, Adita, Tamas, Francios, Simrin, Peitro, Stephen

Agenda:

• Project Week Agenda review http://wiki.na-mic.org/Wiki/index.php/2012_Summer_Project_Week
  • put topics for different slicer talks and breakouts: Developer (extensions, editor extensions) Ultrasound, ITKv4, SimpleITK...
  • review list of registered attendees

2012-05-17

Attendees: Jim, Tina, Emma, Nicole, Simrin, Rui, Dave, Tamas, Pete Anderson,

Highlights:

*review project week projects and add/edit

2012-05-10

Attendees: Marcel, Steve, Tina, Nicole, Jim, Jack van Horn, Andriy I, JC, Emma, Rui, Yi, Simrin (queens), Guillaume, Stephen, Allen, Danny, Greg (CARMA, Utah), Dave

Highlights

• TBI DBP
  • Intro from Jack Van Horn
  • Update from Marcel - work has focused on morphological analysis. Code in matlab right now.
  • visit from Guido to UCLA in two weeks
  • Stephen updated on publications - geometric metamorphosis
• Afib DBP
  • Intro from Allen
  • two slicer extensions will get integrated into nightly build this week - 1) inhomogeneity correction 2) auto scar segmentation

2012-05-03

Attendees: Steve, Tina, Jim, Dan Marcus, Sunil, Nicole, Xiaojun, J2, Emma

Agenda:

• Project Week Planning 2012_Summer_Project_Week#Projects
  • Slicer RT Projects

2012-04-26

Attendees: Steve, Jim, Nicole, Emma, Dave

Agenda:

• Project Week Kickoff w/ discussion of engineering core lead projects: http://wiki.na-mic.org/Wiki/index.php/2012_Summer_Project_Week#Projects

http://boggs.bwh.harvard.edu:8070/remote.html

2012-04-19

Attendees: Steve, Tina, Jan, Nicole, Dave, Hans, Rui, Ron

Agenda:

• Better Integration of ITK4.0/SimpleITK with Slicer

2012-04-12

Attendees: Steve, Jim, Tina, Jan, Guillame, Harini, Dave, Hans, Nicole, Greg, Stephen, J2, Andriy

Agenda:

• Discuss 3D Slicer version 4.1 release
  • Developer documentation: http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.1/HowTo (to update this documentation: http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.1)
  • Announcement page: http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.1/Announcements
  • Where shall announcement email be sent:
    • slicer-devel, slicer-user, namic-all, nitrc, ncigt, namic-projectweek... (who else?)
• what is a good way to share iGyne code
  • For example, https://github.com/pieper/iGyne
• Project Week Kick off TCON on Thursday, April 26, 3pm ET

2012-04-05

Attendees: Jim, Steve, Ron, Jc, J2, Emma, Dave, Mike

Agenda:

• Extensions (see the Extensions/Template directory for the best examples to start from)
• Web Services api for stats

2012-03-29

Attendees: Jim, Steve, Tina, Nicole

Agenda:

• You will hear soon from Ann Adams about the progress report (due at NIH at the end of May)

2012-03-22

Attendees: Jim, Steve, Tina, JC

Agenda:

• DICOM transfer in AMIGO works with Slicer 4
• General discussion of python, extensions, memory handling...

2012-03-15

Attendees: Jim, Steve, Tina, Emma, Jan, Dave, Nicole

Agenda:

• Iowa workshop (Dave)
• Feedback from Using Slicer 4 in AMIGO (Tina, Jan, Xiaojun)
• Slicer 4.1 release

2012-03-08

Attendees: Steve, Jim, Tina, Dave, Nicole, Emma, J2

Agenda:

• Provenance
• Progress Report

2012-03-01

Attendees: Nicole, Steve, Jim, Dave, Tina, Emma

Agenda:

• Snow day!
• Initial planning for Chennai Slicer workshop. Deadline for funding application is in June. Interested presenters to contact Steve.
• Slicer Webinar update: 100 attendees (capacity reached for line)! Video is here: http://player.vimeo.com/video/37671358. Full recording including questions/answers coming soon.

2012-02-23

Attendees: Tina, Stephen, Nicole, Steve, Emma, Dave

Agenda:

• Slicer 4.1 release

2012-02-16

Attendees: Jim, Nicole, Dave, Ron, Emma, Rui, Julien, and more

Agenda:

• Slicer 4.1 release

2012-02-09

Attendees: Steve, Hans, Tina, Nicole, Dave (Iowa), Greg, J2, Emma

Agenda:

• Iowa Diffusion workshop

2012-02-02

Attendees: jim, steve, nicole, tina, j2, dave (the new Mark)

Agenda:

• Finalize the project pages so Tina can submit to NIH.
• Chart futures, Object::disconnect on exit() issues
• DICOM, DWI. Steve is creating DICOM plugin. Plugins will read volumes, RT, Structured Reports, Slicer Data Bundles, DCE, Transforms.

2012-01-26

Attendees: Jim, Steve, Nicole, Mark, Dave, Tina

Agenda:

• Visual Studio 2010 numpy issue
• Qt + Python question

2012-01-19

Attendees: Jim, Steve, Nicole, Tina, Emma,

Agenda:

• Project Week review
• Discussion of web view and chart view

2012-01-12

All Hands Meeting in Progress in Salt Lake City. No call today.

2012-01-05

Attendees: Jim, Steve, Nicole, Mark, Mehdi, Julien, Tina

Agenda:

• Project week preparation: Project List
• Python demo: http://vimeo.com/33236047