Difference between revisions of "Engineering:TCON 2012"

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__TOC__
 
__TOC__
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==2012-12-27==
 +
Attendees: Jim, Steve, Nicole,
 +
 +
Agenda:
 +
* talk about color hierarchies and model maker
 +
 +
==2012-12-20==
 +
Attendees: Ron, Jim, Tina, Nicole, Steve, Sunil, Julien
 +
 +
Agenda:
 +
 +
*review project week projects: http://wiki.na-mic.org/Wiki/index.php/2013_Winter_Project_Week
 +
 +
==2012-12-13==
 +
Attendees: Jim, Hans, Sunil, Tina, Nicole
 +
 +
Agenda:
 +
*review project week projects: http://wiki.na-mic.org/Wiki/index.php/2013_Winter_Project_Week
 +
 +
==2012-12-06==
 +
Attendees: Jim, Steve, Ron, Tina, Sunil Kumar (WashU), Dave, Kunlin
 +
 +
Agenda:
 +
*review project week projects: http://wiki.na-mic.org/Wiki/index.php/2013_Winter_Project_Week
 +
 +
==2012-11-27==
 +
Attendees: Steve, Jim, Tina, JC, Isaiah
 +
 +
Agenda:
 +
*Are there any Slicer lung tumor segmentation (from CT) automated algorithms? suggested workflows? (Hugo Aerts, BWH Radiation Oncology)
 +
**Talk to Raul San Jose and James Ross at 1249 Boylston
 +
**Is there a lung lesion size tool at Kitware that will be incoporrated into Slicer (contact Rick Avila)?
 +
**ePad tool may be applicable? (http://epad.stanford.edu/)
 +
*MRML code refactoring needed to improve response time (view this: https://www.youtube.com/watch?v=pf5cssbVALg where on the right is slicer with pnl/spl brain atlas loaded, and left is xtk with the same) (Tina Kapur, Isaiah Norton)
 +
 +
==2012-11-15==
 +
 +
Attendees: Steve, Tina, Sonia, Nicole, JC, Sunil, Kunlin
 +
 +
Agenda: Project Week Kick off call
 +
 +
*NCBC Meeting Update
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*AHM+Project Week: http://wiki.na-mic.org/Wiki/index.php/AHM_2013
 +
**review/edit agenda esp. breakouts and extensions presentations
 +
**add engr projects
 +
*RSNA prep
 +
 +
==2012-11-07==
 +
 +
No call. NCBC Showcase at NIH.
 +
 +
==2012-11-01==
 +
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Attendees: Jim, Ron, Nicole, Steve, Tina, Jc, ...
 +
 +
Agenda:
 +
*NCBC Showcase mtg
 +
* 4.2.1 development
 +
** crashes
 +
** MRB files + restoring scene views
 +
** annotations in lightboxes
 +
 +
==2012-10-18==
 +
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Attendees: Jim, Steve, Tina, Nicole, JC, Kunlin
 +
 +
Agenda:
 +
* Discussion of [http://www.youtube.com/watch?v=YwApMSbNJoo&feature=plcp SlicerHands experiments (movie)] using the Microsoft Kinect and http://www.threegear.com threegear software.  Sample slicer code is in [https://github.com/pieper/SlicerHands the SlicerHands github repository].
 +
* Discussion of recent changes to annotations and crosshairs ([http://na-mic.org/Bug/view.php?id=2663 #2663] and [http://na-mic.org/Bug/view.php?id=2664 #2664])
 +
* RSNA Planning http://www.na-mic.org/Wiki/index.php/RSNA2012_Planning
 +
 +
==2012-10-11==
 +
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Attendees:
 +
 +
Agenda:
 +
* RSNA Planning http://www.na-mic.org/Wiki/index.php/RSNA2012_Planning
 +
 +
==2012-10-04==
 +
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Attendees: Nicole, jc, guillaume, tina, dave, xiaojun
 +
 +
Agenda:
 +
* RSNA Planning http://www.na-mic.org/Wiki/index.php/RSNA2012_Planning
 +
* https://plus.google.com/hangouts/_/d1f84c048ebf04a7940139e16041015b45826b09?authuser=0&hl=en -- iGyne in Slicer 4
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 +
==2012-09-27==
 +
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Attendees: Jim, Steve, Nicole, JC, Tina, Kunlin, Dave
 +
 +
Agenda:
 +
 +
* Factory machine discussion
 +
* RSNA Planning http://www.na-mic.org/Wiki/index.php/RSNA2012_Planning
 +
* Bremen trip update
 +
 +
==2012-09-20==
 +
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Attendees:
 +
 +
Agenda:
 +
* RSNA Planning http://www.na-mic.org/Wiki/index.php/RSNA2012_Planning
 +
 +
==2012-09-13==
 +
 +
Attendees: Steve, Ron, Tina, Stephen, Jim, Nicole, Kunlin, Jc
 +
 +
Agenda:
 +
* Factory machine
 +
* Annotations
 +
* Extensions
 +
* RSNA Planning http://www.na-mic.org/Wiki/index.php/RSNA2012_Planning
 +
 +
==2012-09-06==
 +
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Attendees: Steve, Sunil, Kunlin, Tina, Dave, Jim
 +
 +
Agenda:
 +
* Discussion of XNAT module for slicer4 (Sunil)
 +
** General status and goals
 +
** [http://massmail.spl.harvard.edu/public-archives/slicer-devel/2012/009792.html Discussion of need for storage node for data transfer.]
 +
** [http://xnatslicer.wikispaces.com/home Project wiki.]
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** [https://bitbucket.org/skumar_wustl/xnatslicerbeta Code repository (svn).]
 +
 +
==2012-08-30==
 +
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Attendees: Jim, Steve, Nicole, J2, Ron
 +
 +
* Discussion of models hierarchy behavior
 +
 +
==2012-08-23==
 +
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Attendees: Tina, Jim, Steve, Rui, Andriy. nicole, dave, hans
 +
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* ITKv4 project discussion
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** Agreed to Start Slicer43 Project as a staging point while 4.2 is frozen
 +
 +
==2012-08-16==
 +
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Attendees: Tina, Andrey, Demian, Steve, Nicole, Sunil, Dave, Hans, Chen, Ron, Jim
 +
 +
*Including Pyxnat in Slicer build (Sunil Kumar from  WUSTL will be calling in)
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* Andrey would like to ask Jim if we can finalize linking modifier for slice / composite slice nodes https://github.com/fedorov/Slicer/tree/1772-linking-modifier
 +
 +
Discussion:
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* http://na-mic.org/Bug/view.php?id=2352
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* Other python requested:
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** pg8000 (pure python postgres interface) (can be done with pip) http://html.pg8000.googlecode.com/hg/index.html
 +
 +
PyXNAT users potential
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* Hans, Jayashree, Murat, Andrey, Isaiah
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NiPype
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* Hans, Demian
 +
 +
==2012-08-09==
 +
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Attendees: Steve, Tina, Nicole
 +
 +
* Discussion of NAMIC impact
 +
 +
==2012-08-02==
 +
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Attendees:Steve, Nicole, Jim, Ron
 +
 +
* Jim and Steve talk about CTK & DICOM
 +
** clean build should fix it
 +
* Nicole and Jim talk about PARSE_ARGS
 +
** Jim will take a look at emailed command line
 +
* Ron and Nicole talk about model hierarchies
 +
** feature request to have a template hierarchy to fill in when running model maker (and more)
 +
 +
==2012-07-26==
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Attendees:Steve, Nicole, Tina
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* Reminder: Please put the NA-MIC logo on MICCAI slides and posters
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* Image Guided Therapy Workshop in Boston, Sept 21: http://www.ncigt.org/pages/IGT_Workshop_2012
 +
 +
==2012-07-19==
 +
Attendees: Jim, Dave, Nicole, Hans
 +
 +
Agenda:
 +
* Please put the NA-MIC logo on MICCAI slides and posters
 +
* Feature request to have mutually exclusive "sets" of parameters (radio button control that would enable/disable complete blocks of parameters)
 +
 +
==2012-07-12==
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Attendees: Jim, Dave, Nicole
 +
 +
Agenda:
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* Strategies for Qt widget development (CTK, Slicer, Python)
 +
* CTK Hackfest
 +
 +
==2012-07-05==
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Attendees: Jim, Steve, Dave, Nicole, JC, Julien
 +
 +
Agenda:
 +
* volume loading
 +
** discussing refactor of AddArchetypeVolume
 +
** best way to read vector volumes?
 +
** Gordon wants us on the newest version of ITK first to update the NRRD readers
 +
** Julien wants to support mapping one extension to different types of extensions
 +
 +
==2012-06-14==
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Attendees:  Tina, Pete Anderson, Nicole Aucoin, Simrin, Guillaume, JC, Tyler, Nabgha, Yan, Steve Pieper, Jim
 +
 +
Agenda:
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* Project Week last minute planning
 +
 
==2012-06-07==
 
==2012-06-07==
 
Attendees:  Tina, Jim, Dave, Pete, Tomas, Andrash, Simrin, Samira, Saman, Nicole, Hans, Steven, Rui, Ron
 
Attendees:  Tina, Jim, Dave, Pete, Tomas, Andrash, Simrin, Samira, Saman, Nicole, Hans, Steven, Rui, Ron
Line 18: Line 227:
 
*** TODO: Discuss during Project Week
 
*** TODO: Discuss during Project Week
 
** AMIGO session: Saturday
 
** AMIGO session: Saturday
 +
** Discussion of projects
  
 
==2012-05-31==
 
==2012-05-31==

Latest revision as of 19:08, 29 January 2013

Home < Engineering:TCON 2012
Back to TCON:Main, Events

2012-12-27

Attendees: Jim, Steve, Nicole,

Agenda:

  • talk about color hierarchies and model maker

2012-12-20

Attendees: Ron, Jim, Tina, Nicole, Steve, Sunil, Julien

Agenda:

2012-12-13

Attendees: Jim, Hans, Sunil, Tina, Nicole

Agenda:

2012-12-06

Attendees: Jim, Steve, Ron, Tina, Sunil Kumar (WashU), Dave, Kunlin

Agenda:

2012-11-27

Attendees: Steve, Jim, Tina, JC, Isaiah

Agenda:

  • Are there any Slicer lung tumor segmentation (from CT) automated algorithms? suggested workflows? (Hugo Aerts, BWH Radiation Oncology)
    • Talk to Raul San Jose and James Ross at 1249 Boylston
    • Is there a lung lesion size tool at Kitware that will be incoporrated into Slicer (contact Rick Avila)?
    • ePad tool may be applicable? (http://epad.stanford.edu/)
  • MRML code refactoring needed to improve response time (view this: https://www.youtube.com/watch?v=pf5cssbVALg where on the right is slicer with pnl/spl brain atlas loaded, and left is xtk with the same) (Tina Kapur, Isaiah Norton)

2012-11-15

Attendees: Steve, Tina, Sonia, Nicole, JC, Sunil, Kunlin

Agenda: Project Week Kick off call

2012-11-07

No call. NCBC Showcase at NIH.

2012-11-01

Attendees: Jim, Ron, Nicole, Steve, Tina, Jc, ...

Agenda:

  • NCBC Showcase mtg
  • 4.2.1 development
    • crashes
    • MRB files + restoring scene views
    • annotations in lightboxes

2012-10-18

Attendees: Jim, Steve, Tina, Nicole, JC, Kunlin

Agenda:

2012-10-11

Attendees:

Agenda:

2012-10-04

Attendees: Nicole, jc, guillaume, tina, dave, xiaojun

Agenda:

2012-09-27

Attendees: Jim, Steve, Nicole, JC, Tina, Kunlin, Dave

Agenda:

2012-09-20

Attendees:

Agenda:

2012-09-13

Attendees: Steve, Ron, Tina, Stephen, Jim, Nicole, Kunlin, Jc

Agenda:

2012-09-06

Attendees: Steve, Sunil, Kunlin, Tina, Dave, Jim

Agenda:

2012-08-30

Attendees: Jim, Steve, Nicole, J2, Ron

  • Discussion of models hierarchy behavior

2012-08-23

Attendees: Tina, Jim, Steve, Rui, Andriy. nicole, dave, hans

  • ITKv4 project discussion
    • Agreed to Start Slicer43 Project as a staging point while 4.2 is frozen

2012-08-16

Attendees: Tina, Andrey, Demian, Steve, Nicole, Sunil, Dave, Hans, Chen, Ron, Jim

Discussion:

PyXNAT users potential

  • Hans, Jayashree, Murat, Andrey, Isaiah

NiPype

  • Hans, Demian

2012-08-09

Attendees: Steve, Tina, Nicole

  • Discussion of NAMIC impact

2012-08-02

Attendees:Steve, Nicole, Jim, Ron

  • Jim and Steve talk about CTK & DICOM
    • clean build should fix it
  • Nicole and Jim talk about PARSE_ARGS
    • Jim will take a look at emailed command line
  • Ron and Nicole talk about model hierarchies
    • feature request to have a template hierarchy to fill in when running model maker (and more)

2012-07-26

Attendees:Steve, Nicole, Tina

2012-07-19

Attendees: Jim, Dave, Nicole, Hans

Agenda:

  • Please put the NA-MIC logo on MICCAI slides and posters
  • Feature request to have mutually exclusive "sets" of parameters (radio button control that would enable/disable complete blocks of parameters)

2012-07-12

Attendees: Jim, Dave, Nicole

Agenda:

  • Strategies for Qt widget development (CTK, Slicer, Python)
  • CTK Hackfest

2012-07-05

Attendees: Jim, Steve, Dave, Nicole, JC, Julien

Agenda:

  • volume loading
    • discussing refactor of AddArchetypeVolume
    • best way to read vector volumes?
    • Gordon wants us on the newest version of ITK first to update the NRRD readers
    • Julien wants to support mapping one extension to different types of extensions

2012-06-14

Attendees: Tina, Pete Anderson, Nicole Aucoin, Simrin, Guillaume, JC, Tyler, Nabgha, Yan, Steve Pieper, Jim

Agenda:

  • Project Week last minute planning

2012-06-07

Attendees: Tina, Jim, Dave, Pete, Tomas, Andrash, Simrin, Samira, Saman, Nicole, Hans, Steven, Rui, Ron

Agenda:

  • NIH Progress report comments
    • DBP comments and follow-up revisions
  • Project week
    • Registration (currently ~50)
      • Hotel costs have been prohibitive this year
      • Suggestion - new location for Summer Project Week, earlier time of the year?
      • Airport hub
      • TODO: Discuss during Project Week
    • CARS & Project Week
      • Avoiding conflict may not be advantageous
      • TODO: Discuss during Project Week
    • AMIGO session: Saturday
    • Discussion of projects

2012-05-31

Attendees: Jim, Steve, Sonja, Nicole, Tamas, Hans, Anthony, Jerome, Peter, Tina, Rui, Tobias, Dave, Ron

Agenda:

2012-05-24

Attendees: Jim, Steve, Emma, Peter Anderson, Markus, Rui, Adita, Tamas, Francios, Simrin, Peitro, Stephen

Agenda:

2012-05-17

Attendees: Jim, Tina, Emma, Nicole, Simrin, Rui, Dave, Tamas, Pete Anderson,

Highlights: 

*review project week projects and add/edit


2012-05-10

Attendees: Marcel, Steve, Tina, Nicole, Jim, Jack van Horn, Andriy I, JC, Emma, Rui, Yi, Simrin (queens), Guillaume, Stephen, Allen, Danny, Greg (CARMA, Utah), Dave

Highlights

  • TBI DBP
    • Intro from Jack Van Horn
    • Update from Marcel - work has focused on morphological analysis. Code in matlab right now.
    • visit from Guido to UCLA in two weeks
    • Stephen updated on publications - geometric metamorphosis
  • Afib DBP
    • Intro from Allen
    • two slicer extensions will get integrated into nightly build this week - 1) inhomogeneity correction 2) auto scar segmentation

2012-05-03

Attendees: Steve, Tina, Jim, Dan Marcus, Sunil, Nicole, Xiaojun, J2, Emma


Agenda:

2012-04-26

Attendees: Steve, Jim, Nicole, Emma, Dave

Agenda:

http://boggs.bwh.harvard.edu:8070/remote.html

2012-04-19

Attendees: Steve, Tina, Jan, Nicole, Dave, Hans, Rui, Ron


Agenda:

  • Better Integration of ITK4.0/SimpleITK with Slicer

2012-04-12

Attendees: Steve, Jim, Tina, Jan, Guillame, Harini, Dave, Hans, Nicole, Greg, Stephen, J2, Andriy

Agenda:

2012-04-05

Attendees: Jim, Steve, Ron, Jc, J2, Emma, Dave, Mike

Agenda:

  • Extensions (see the Extensions/Template directory for the best examples to start from)
  • Web Services api for stats

2012-03-29

Attendees: Jim, Steve, Tina, Nicole

Agenda:

  • You will hear soon from Ann Adams about the progress report (due at NIH at the end of May)

2012-03-22

Attendees: Jim, Steve, Tina, JC

Agenda:

  • DICOM transfer in AMIGO works with Slicer 4
  • General discussion of python, extensions, memory handling...

2012-03-15

Attendees: Jim, Steve, Tina, Emma, Jan, Dave, Nicole

Agenda:

  • Iowa workshop (Dave)
  • Feedback from Using Slicer 4 in AMIGO (Tina, Jan, Xiaojun)
  • Slicer 4.1 release

2012-03-08

Attendees: Steve, Jim, Tina, Dave, Nicole, Emma, J2

Agenda:

2012-03-01

Attendees: Nicole, Steve, Jim, Dave, Tina, Emma

Agenda:

  • Snow day!
  • Initial planning for Chennai Slicer workshop. Deadline for funding application is in June. Interested presenters to contact Steve.
  • Slicer Webinar update: 100 attendees (capacity reached for line)! Video is here: http://player.vimeo.com/video/37671358. Full recording including questions/answers coming soon.

2012-02-23

Attendees: Tina, Stephen, Nicole, Steve, Emma, Dave

Agenda:

2012-02-16

Attendees: Jim, Nicole, Dave, Ron, Emma, Rui, Julien, and more

Agenda:

2012-02-09

Attendees: Steve, Hans, Tina, Nicole, Dave (Iowa), Greg, J2, Emma

Agenda:

  • Iowa Diffusion workshop

2012-02-02

Attendees: jim, steve, nicole, tina, j2, dave (the new Mark)

Agenda:

  • Finalize the project pages so Tina can submit to NIH.
  • Chart futures, Object::disconnect on exit() issues
  • DICOM, DWI. Steve is creating DICOM plugin. Plugins will read volumes, RT, Structured Reports, Slicer Data Bundles, DCE, Transforms.

2012-01-26

Attendees: Jim, Steve, Nicole, Mark, Dave, Tina

Agenda:

  • Visual Studio 2010 numpy issue
  • Qt + Python question

2012-01-19

Attendees: Jim, Steve, Nicole, Tina, Emma,

Agenda:

  • Project Week review
  • Discussion of web view and chart view

2012-01-12

All Hands Meeting in Progress in Salt Lake City. No call today.

2012-01-05

Attendees: Jim, Steve, Nicole, Mark, Mehdi, Julien, Tina

Agenda:

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