Difference between revisions of "2014 Summer Project Week"

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__NOTOC__
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Back to [[Events]]
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[[image:PW-MIT2014.png|300px]]
 
[[image:PW-MIT2014.png|300px]]
  
 +
=Welcome to the web page for the 19th Project Week!=
  
 +
[[image:Projectweek-2014-06-23-IMG 0837.JPG|800px|opening session]]
  
−
Project Week is a hands on activity -- programming using the open source [[NA-MIC-Kit|NA-MIC Kit]], algorithm design, and clinical application -- that has become one of the major events in the NA-MIC, NCIGT, and NAC calendars. It is held in the summer at MIT, typically the last week of June, and a shorter version is held in Salt Lake City in the winter, typically the second week of January. 
+
[[image:Projectweek-19.5.JPG|800px|opening session]]
  
−
Active preparation begins 6-8 weeks prior to the meeting, when a kick-off teleconference is hosted by the NA-MIC Engineering, Dissemination, and Leadership teams, the primary hosts of this event.  Invitations to this call are sent to all NA-MIC members, past attendees of the event, as well as any parties who have expressed an interest in working with NA-MIC. The main goal of the kick-off call is to get an idea of which groups/projects will be active at the upcoming event, and to ensure that there is sufficient NA-MIC coverage for all. Subsequent teleconferences allow the hosts to finalize the project teams, consolidate any common components, and identify topics that should be discussed in breakout sessions. In the final days leading upto the meeting, all project teams are asked to fill in a template page on this wiki that describes the objectives and plan of their projects.
+
==Summary==
 +
The most recent project week was the 19th event in the series. It was held June 23-27, 2014 at MIT. It recorded 81 registered attendees, who worked on 66 projects. These attendees represented 21 academic sites (Brigham and Women’s Hospital, Massachusetts General Hospital, MIT, WPI, University of Utah, University of Iowa, University of Michigan, University of North Carolina at Chapel Hill, Queen’s University, University of Sydney, University Magna Graecia of Catanzaro, Old Dominion University, University of CA San Diego, Johns Hopkins University, Stony Brook University, University of Washington, NIH, Seattle Children's Research Institute, University College Cork, Ben-Gurion University, Princess Margaret Cancer Centre) and 4 companies (GE Global Research, Kitware, Fraunhofer MEVIS, Isomics Inc).
  
−
The event itself starts off with a short presentation by each project team, driven using their previously created description, and allows all participants to be acquainted with others who are doing similar work. In the rest of the week, about half the time is spent in breakout discussions on topics of common interest of subsets of the attendees, and the other half is spent in project teams, doing hands-on programming, algorithm design, or clinical application of NA-MIC kit tools.  The hands-on activities are done in 10-20 small teams of size 3-5, each with a mix of experts in NA-MIC kit software, algorithms, and clinical.  To facilitate this work, a large room is setup with several tables, with internet and power access, and each team gathers on a table with their individual laptops, connects to the internet to download their software and data, and is able to work on their projects.  On the last day of the event, a closing presentation session is held in which each project team presents a summary of what they accomplished during the week.
+
A [[Project_Events#Past_Project_Weeks|summary]] of all past Project Events.
 +
==Logistics==
 +
*Dates: June 23-27, 2014.
 +
*Location: MIT, Cambridge, MA.
 +
==Agenda==
 +
{|border="1"
 +
|-style="background:#b0d5e6;color:#02186f"
 +
!style="width:10%" |Time
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!style="width:18%" |Monday, June 23
 +
!style="width:18%" |Tuesday, June 24
 +
!style="width:18%" |Wednesday, June 25
 +
!style="width:18%" |Thursday, June 26
 +
!style="width:18%" |Friday, June 27
 +
|-
 +
|
 +
|bgcolor="#dbdbdb"|'''Project Presentations'''
 +
|bgcolor="#6494ec"|'''NA-MIC Update Day'''
 +
|
 +
|bgcolor="#88aaae"|'''IGT Day'''
 +
|bgcolor="#faedb6"|'''Reporting Day'''
 +
|-
 +
|bgcolor="#ffffdd"|'''8:30am'''
 +
|
 +
|bgcolor="#ffffaa"|Breakfast
 +
|bgcolor="#ffffaa"|Breakfast
 +
|bgcolor="#ffffaa"|Breakfast
 +
|bgcolor="#ffffaa"|Breakfast (Stata Building 4th Floor R&D Common Dining Area)
 +
|-
 +
|bgcolor="#ffffdd"|'''9am-12pm'''
 +
|
 +
|'''10-11:30am''' <font color="#503020">Breakout Session:'''</font><br>[[2014 Project Week Breakout Session: DICOM|DICOM]] (Steve Pieper)
 +
[[MIT_Project_Week_Rooms#Star|Star]]
 +
|
 +
'''11am-12noon''' Breakout Session: [[2014_Project_Week_Breakout_Session: Slicer for users| Slicer for users]] (Ron Kikinis)
 +
<br>
 +
|'''9:00-10:30am''' [[2014_Tutorial_Contest|Tutorial Contest Presentations (Sonia Pujol)]] <br>
 +
[[MIT_Project_Week_Rooms#Grier_34-401_AB|Grier Rooms]]
 +
<br>----------------------------------------<br>
 +
'''10am-12pm: <font color="#4020ff">Breakout Session:'''</font><br>[[2014 Project Week Breakout Session: IGT Neuro|Image-Guided Therapy - Neurosurgery]] (Alexandra Golby, Tina Kapur) <br>
 +
[[MIT_Project_Week_Rooms#Star|Star]]
 +
|'''10am-12pm:''' [[#Projects|Project Progress Updates]] (Stata Building 4th Floor R&D Common Dining Area)
 +
<br>----------------------------------------<br>
 +
'''12pm''' [[Events:TutorialContestJune2014|Tutorial Contest Winner Announcement]]
 +
(Stata Building 4th Floor R&D Common Dining Area)
  
−
A summary of all past NA-MIC Project Events is available [[Project_Events#Past|here]].
+
|-
−
= Dates.Venue.Registration =
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|bgcolor="#ffffdd"|'''12pm-1pm'''
 +
|bgcolor="#ffffaa"|Lunch
 +
|bgcolor="#ffffaa"|Lunch
 +
|bgcolor="#ffffaa"|Lunch
 +
|bgcolor="#ffffaa"|Lunch
 +
|bgcolor="#ffffaa"|Lunch boxes; Adjourn by 1:30pm
 +
|-
 +
|bgcolor="#ffffdd"|'''1pm-5:30pm'''
 +
|'''1-1:05pm: <font color="#503020">Ron Kikinis: Welcome</font>'''
 +
[[MIT_Project_Week_Rooms#Grier_34-401_AB|Grier Rooms]]
 +
<br>----------------------------------------<br>
 +
'''1:05-3:30pm:''' [[#Projects|Project Introductions]] (all Project Leads)
 +
[[MIT_Project_Week_Rooms#Grier_34-401_AB|Grier Rooms]]
 +
<br>----------------------------------------<br>
 +
'''3:30-4:30pm''' [[2014 Summer Project Week Breakout Session:SlicerExtensions|Slicer4 Extensions]] (Jean-Christophe Fillion-Robin)  <br>
 +
[[MIT_Project_Week_Rooms#Grier_34-401_AB|Grier Room (Left)]]
 +
|'''1-3pm:''' <font color="#503020">Breakout Session:'''</font><br>[[2014 Project Week Breakout Session: QIICR|QIICR]] (Andrey Fedorov)
 +
[[MIT_Project_Week_Rooms#Kiva|Kiva]]
 +
|'''1-2:30pm:''' <font color="#503020">Breakout Session:'''</font><br>[[2014 Project Week Breakout Session: Contours|Contours]] (Adam Rankin, Csaba Pinter)
 +
[[MIT_Project_Week_Rooms#Kiva|Kiva]]
 +
|'''1-3pm:''' <font color="#503020">Breakout Session:'''</font><br>[[2014 Project Week Breakout Session: IGT Prostate|Image-Guided Therapy - Prostate Interventions]] (Clare Tempany, Noby Hata)
 +
[[MIT_Project_Week_Rooms#Star|Star]]  
 +
<br>----------------------------------------<br>
 +
|
 +
|-
 +
|bgcolor="#ffffdd"|'''5:30pm'''
 +
|bgcolor="#f0e68b"|Adjourn for the day
 +
|bgcolor="#f0e68b"|Adjourn for the day
 +
|bgcolor="#f0e68b"|Adjourn for the day
 +
|bgcolor="#f0e68b"|Adjourn for the day
 +
|
 +
|}
  
−
Please [[AHM_2014#Dates_Venue_Registration|click here for Dates, Venue, and Registration]] for this event.
+
== '''Background''' ==
  
−
= [[AHM_2014#Agenda|'''AGENDA''']] and Project List=
 
  
−
Please:
+
Project Week is a hands on activity -- programming using the open source [[NA-MIC-Kit|NA-MIC Kit]], algorithm design, and clinical application -- that has become one of the major events in the NA-MIC, NCIGT, and NAC calendars. It is held in the summer at MIT, typically the last week of June, and a shorter version is held in Salt Lake City in the winter, typically the second week of January. 
−
*  [[AHM_2014#Agenda|'''Click here for the agenda for AHM 2014 and Project Week''']].
 
−
*  [[#Projects|'''Click here to jump to Project list''']]
 
  
−
=Background and Preparation=
+
Active preparation begins 6-8 weeks prior to the meeting, when a kick-off teleconference is hosted by the NA-MIC Engineering, Dissemination, and Leadership teams, the primary hosts of this event.  Invitations to this call are sent to all NA-MIC members, past attendees of the event, as well as any parties who have expressed an interest in working with NA-MIC. The main goal of the kick-off call is to get an idea of which groups/projects will be active at the upcoming event, and to ensure that there is sufficient NA-MIC coverage for all. Subsequent teleconferences allow the hosts to finalize the project teams, consolidate any common components, and identify topics that should be discussed in breakout sessions. In the final days leading upto the meeting, all project teams are asked to fill in a template page on this wiki that describes the objectives and plan of their projects.
  
−
A summary of all past NA-MIC Project Events is available [[Project_Events#Past|here]].
+
The event itself starts off with a short presentation by each project team, driven using their previously created description, and allows all participants to be acquainted with others who are doing similar work. In the rest of the week, about half the time is spent in breakout discussions on topics of common interest of subsets of the attendees, and the other half is spent in project teams, doing hands-on programming, algorithm design, or clinical application of NA-MIC kit tools.  The hands-on activities are done in 10-20 small teams of size 3-5, each with a mix of experts in NA-MIC kit software, algorithms, and clinical.  To facilitate this work, a large room is setup with several tables, with internet and power access, and each team gathers on a table with their individual laptops, connects to the internet to download their software and data, and is able to work on their projects.  On the last day of the event, a closing presentation session is held in which each project team presents a summary of what they accomplished during the week.
  
−
Please make sure that you are on the [http://public.kitware.com/cgi-bin/mailman/listinfo/na-mic-project-week na-mic-project-week mailing list]
+
Please make sure that you are on the [http://public.kitware.com/mailman/listinfo/na-mic-project-week na-mic-project-week mailing list]
  
 
=Projects=
 
=Projects=
 
* [[2014_Project_Week_Template | Template for project pages]]
 
* [[2014_Project_Week_Template | Template for project pages]]
  
−
==TBI==
+
==Image-Guided Therapy==
−
*[[2014_Project_Week:TBIatrophy|Multimodal neuroimaging for the quantification of brain atrophy at six months following severe traumatic brain injury]] (Andrei Irimia, SY Matthew Goh, Carinna M. Torgerson, John D. Van Horn)
 
−
*[[2014_Project_Week:TBIdemyelination|Systematic evaluation of axonal demyelination subsequent to traumatic brain injury using structural T1- and T2-weighted magnetic resonance imaging]] (Andrei Irimia, SY Matthew Goh, Carinna M. Torgerson, John D. Van Horn)
 
−
*[[2014_Project_Week:BrainAging|Mapping the effect of traumatic brain injury upon white matter connections in the human brain using 3D Slicer]] (Andrei Irimia, John D. Van Horn)
 
−
*[[2014_Project_Week:LongitudinalDTI|Patient-specific longitudinal DTI analysis in traumatic brain injury]] (Anuja Sharma, Andrei Irimia, Bo Wang, John D. Van Horn, Martin Styner, Guido gerig)
 
−
*[[2014_Project_Week:TBISegmentation|Testing the interactive segmentation algorithm for traumatic brain injury]] (Bo Wang, Marcel Prastawa, Andrei Irimia, John D. Van Horn, Guido Gerig)
 
  
−
==Atrial Fibrillation==
+
* [[2014_Summer_Project_Week:SlicerIGT|SlicerIGT extension: testing, tutorials, website]] (Tamas Ungi, Nobuhiko Hata, Tina Kapur)
−
*[[2014_Project_Week:MRAFusionRegistration|DEMRI LA Segmentation via Image Fusion (MRA)]] (Salma, Josh, Alan)
+
* [[2014_Summer_Project_Week:Robot_Control_With_OpenIGTLink | Robot Control With OpenIGTLink]]  ( Gregory Fischer WPI, Nirav Patel WPI, Nobuhiko Hata BWH)
−
*[[2014_Project_Week:LAFibrosisVisualizationModule|LA Fibrosis / Scar Visualization]] (Salma, Josh, Alan)
+
*[[2014_Summer_Project_Week:Visual_Guidance_for_Neurosurgery_US_Recording  |Visual Guidance for Neurosurgery US Data Recording
−
*[[2014_Project_Week:CARMADocumentation|CARMA Extension Documentation Project]] (Salma, Josh)
+
]] (Alireza, Isaiah, Rahul, Matthew, Tina, Steve, Sandy, Alex Golby)
−
*[[2014_Project_Week:GraphCutsLASegmentationModule|LA Segmentation module using multi-column Graph Cuts]] (Gopal, Salma, Josh, Rob, Ross)
+
* [[Gestural Point of Care Interface for IGT]] (Saskia, Franklin, Steve, Tobias, Andras)
−
*[[2014_Project_Week:AblationSuccessRatePredictionUsingJointImageAndShapeAnalysis|Ablation Success Rate Prediction Using Joint Image And Shape Analysis]](Yi Gao, LiangJia Zhu, Josh Cates, Rob MacLeod, Sylvain Bouix, Ron Kikinis, Allen Tannenbaum)
+
* [[2014_Summer_Project_Week:Intelligent_Steering | Steered Image Registration using Intelligent Interfaces for Minimal User Interaction]] (Marcel Prastawa, Jim Miller, Steve Pieper)
−
*[[2014_Project_Week:GrowCutLevelSetLA|Grow cut, level set integration for interactive LA segmentation]] ( Liangjia Zhu, Ivan Kolesov, Yi Gao, Allen Tannenbaum)
+
* [[2014_Summer_Project_Week:CBC_3D_I2MConversion | CBC 3D I2M Conversion ]] (Fotis Drakopoulos, Yixun Liu, Andrey Fedorov, Ron Kikinis, Nikos Chrisochoides)
 +
* [[2014_Summer_Project_Week:An ITK implementation of Physics-Based Non-Rigid Registration method for Brain Shift | An ITK Implementation of Physics-Based Non-Rigid Registration Method for Brain Shift]] (Fotis Drakopoulos, Yixun Liu, Andriy Kot, Andrey Fedorov, Olivier Clatz, Ron Kikinis, Nikos Chrisochoides)
 +
* [[2014_Summer_Project_Week:Open_source_electromagnetic_trackers_usingOpenIGTLink| Open-source Electromagnetic Trackers using OpenIGTLink]] (Peter Traneus Anderson, Tina Kapur, Sonia Pujol)
 +
*[[2014_Summer_Project_Week:Intraoperative_Registration_of_preoperative_CT_and_C-arm_CT_of_the_lung | Intraoperative Registration of Preoperative CT and C-arm CT of the Lung]] (Katharina Breininger, Jay Jagadeesan)
 +
*[[2014_Summer_Project_Week:Image guided neuroendoscope | Making Realistic Clinical Story Board for Image-guided Skull Base Endoscopic Surgery]] (Keryn Palmer, Nobuhiko Hata)
 +
*[[2014_Summer_Project_Week:PathExplorer_Extension | PathExplorer Extension (code refactoring, documentation, tutorial)]] (Laurent Chauvin, Tamas Ungi, Nobuhiko Hata)
 +
*[[2014_Summer_Project_Week:MR-Ultrasound_Registration_for_Prostate_Interventions | MR-Ultrasound Registration for Prostate Interventions]] (Andriy Fedorov, Chenxi Zhang, Andras Lasso)
 +
*[[2014_Summer_Project_Week:Surface_approximation_from_contour_points | Surface Approximation from Contour Points]] (Chenxi Zhang, Csaba Pinter, Andrey Fedorov)
 +
*[[2014_Summer_Project_Week:Cortical_Dysplasia_Identification | Tools for Dysplasia Identification in Epilepsy]] (Luiz Murta; Emylin Souza; Tina Kapur; Ron Kikinis)
 +
*[[2014_Summer_Project_Week:Focused_Ultrasound_Pressure_Sensor| Focused Ultrasound Pressure Sensor  ]] (Robin Kouver, Nassim Alikacem)  
 +
*[[2014_Summer_Project_Week:Focused_Ultrasound_Positioner| Focused Ultrasound Positioner  ]] (Nassim Alikacem, Robin Kouver)
 +
*[[2014_Summer_Project_Week:Software_Platform_for_Robotic_Surgery|Searching for Software Platform for Robotic Surgery]] (Yangming Li)
 +
*[[2014_Summer_Project_Week:mipiX | Rapid Visualization of Large Image Collections]] (Adrian, Ramesh, Polina)
 +
*[[2014_Summer_Project_Week:Ventriculostomy_Guidance_Transcranial_Ultrasound  |Ventriculostomy Guidance with Transcranial Ultrasound
 +
]] (Jason White, Kirby Vosburgh, Can Meral, Alex Golby)
 +
*[[2014_Summer_Project_Week:EM-tracked_prostate_US_calibration_with_Plus|Calibration of EM-tracked US Acquisition using Plus]] (Andrey Fedorov, Tamas Ungi, Andras Lasso, Jay Jagadeesan)
  
 
==Huntington's Disease==
 
==Huntington's Disease==
−
*[[2014_Project_Week:DWIDispersion|DWI Dispersion & Compressed Sensing Conversions]] (Hans, CF, Peter Savadjiev, Kent, Dave Welch)
+
*[[2014_Summer_Project_Week:FiberTractDispersion| Fiber Tract Dispersion and UKF Tractography]] (Peter Savadjiev, Yogesh Rathi, Hans Johnson, C-F Westin)
−
*[[2014_Project_Week:Modules scripting|Slicer module scripting]] (Dave, Bradley Lowekamp)
+
*[[2014_Summer_Project_Week:LongitudinalSeg| 4D Segmentation for Longitudinal Consistency ]] (Regina Kim, James Fishbaugh, Guido Gerig, Hans Johnson)
−
*[[2014_Project_Week:QA module| QA module]] (Dave)
+
*[[2014_Summer_Project_Week:AutomatedSegmentationQA | Automated Prior-driven Segmentation QA]] (Dave Welch, Hans Johnson)
−
*[[2014_Project_Week:DWIConverter|DWIConverter]] (Hans, Kent)
+
*[[2014_Summer_Project_Week:ManualSegmentationQA | Manual Segmentation QA]] (Dave Welch, Hans Johnson)
−
*[[2014_Project_Week:Slicer_Based_Surface_Template_Estimation|Slicer Based Surface Template Estimation]] (Saurabh Jain, Steve Pieper, Hans Johnson, Josh Cates)
+
*[[2014_Summer_Project_Week:UpdateBRAINSTools | Update BRAINSTools (BRAINSFit and DWIConvert) in Slicer]] (Hans Johnson, Dave Welch, Kent Williams, JC, Brad)
−
*[[2014_Project_Week:HD_4DShapes|4D shape analysis: application to HD ]] (James Fishbaugh,Hans Johnson, Guido Gerig)
+
*[[2014_Summer_Prioject_Week:AgatstonScoring | Cardiac Agatston Scoring Extension]] (Jessica Forbes, Hans Johnson)
−
*[[2014_Project_Week:Shape_Registration_and_Regression|Shape registration and regression in Slicer4 ]] (James Fishbaugh,Hans Johnson, Guido Gerig)
 
−
*[[2014_Project_Week:WMQLExtension|WMQL implementation as a Slicer extension]] (Lichen Liang, Peter Savadjiev, Lauren O'Donnell, Steve Pieper)
 
  
−
==Head and Neck Cancer==
+
==TBI==
−
*[[2014_Project_Week:DIR_Validation|DIR Validation: Landmark Mismatch Error]] (Nadya and Greg)
+
*[[2014_Summer_Project_Week:TBI_Segmentation| Interactive Segmentation for Traumatic Brain Injury ]] (Bo Wang, Marcel Prastawa, Andrei Irimia, John D. Van Horn, Guido Gerig)
−
*[[2014_Project_Week:Vector_Field|DIR Validation: Vector Field Analysis]] (Nadya and Greg)
 
−
*[[2014_Project_Week:Hybrid_bspline|Hybrid B Spline]] (Nadya, Greg, Steve)
 
−
*[[2014_Project_Week:CarreraSlice|Interactive Segmentation]] (Ivan, LiangJia, Nadya, Yi, Greg, Allen)
 
  
−
==Slicer4 Extensions==
+
==Stroke==
−
*[[2014_Project_Week:ShapePopulationViewer|Surface Visualization - ShapePopulationViewer]] (Alexis Girault, Francois Budin, Beatriz Panaigua, Martin Styner)
+
*[[2014_Summer_Project_Week:Stroke-ImagingGenetics | Stroke Imaging Genetics]] (Adrian Dalca, Ramesh Sridharan, Polina Golland)
−
*[[2014_Project_Week:DTIAnalysisPipeline|DTI Analysis Pipeline as Slicer4 Extensions]] (Francois Budin, Martin Styner)
+
*[[2014_Summer_Project_Week:Stroke-SuperResolution | Stroke Super Resolution]] (Adrian Dalca, Ramesh Sridharan, Polina Golland)
  
 
==Cardiac==
 
==Cardiac==
−
*[[2014_Project_Week:CardiacStemCellMonitoring|Monitoring engrafted stem cells in cardiac tissue with time series manganese enhanced MRI]] (Karl Diedrich)
+
*[[2014_Summer_Project_Week:Cardiac-Congenital | MRI Segmentation for Congenital Heart Disease]] (Danielle Pace, Adrian Dalca, Polina Golland)
−
*[[2014_Project_Week:CardiacCongenitalSegmentation|Whole-heart segmentation of cardiac MR images in congenital heart defect cases]] (Danielle Pace, Polina Golland)
 
  
−
==Stroke==
+
==Chronic Obstructive Pulmonary Disease, Lung, Chest ==
  
−
*[[2014_Project_Week:Multi-Tissue_Stroke_Segmentation|Multi-Tissue Stroke Segmentation]] (Polina Binder, Ramesh Sridharan, Polina Golland)
+
*[[2014_Summer_Project_Week: Pectoralis muscle segmentation| Pectoralis Muscle Segmentation]] (Rola Harmouche, James Ross, Raul San Jose)
−
*[[2014_Project_Week:Processing_Pipelines|Processing Pipelines]] (Ramesh Sridharan, Polina Golland)
+
*[[2014_Summer_Project_Week:Image_Registration_with_Sliding_Motion_Constraints | Image Registration with Sliding Motion Constraints]] (Alexander Derksen, Kanglin Chen, Gregory Sharp)
 +
*[[2014_Summer_Project_Week:Multiscale_Non_Local_Means_filter_(NLM)_for_chest_CT_images | Multiscale Non Local Means Filter (NLM) for chest CT images]] (Pietro Nardelli, Raul San Jose)
  
−
==Brain Segmentation==
+
==Head and Neck Cancer / Radiotherapy ==
−
*[[2014_Project_Week:MultiAtlas_MultiImage_Segmentation|Multi-Atlas based Multi-Image Segmentation]] (Minjeong Kim, Xiaofeng Liu, Jim Miller, Dinggang Shen)
+
*[[2014_Summer_Project_Week:SlicerRT scalarbar vtk6 migration| ScalarBar vtk6 Migration]] (Kevin Wang, Nicole)
 +
*[[2014_Summer_Project_Week:Upload_HN_data| Upload H&N data]] (Greg Sharp, Paolo Zaffino)
 +
*[[2014_Summer_Project_Week:DIR_stop_and_restart| DIR Stop and Restart]] (Paolo Zaffino, Greg Sharp, Steve Pieper)
 +
*[[2014_Summer_Project_Week:Proton_pencil_beam| Proton Pencil Beam Dose Calculation]] (Maxime Desplanques, Kevin Wang, Greg Sharp)
  
−
==Image-Guided Interventions==
+
==[http://qiicr.org QIICR]==
−
*[[2014_Project_Week:OpenIGTLink| OpenIGTLink Interface: New data types and structures]] (Junichi Tokuda, Andras Lasso, Steve Piper, ???)
+
* [[2014_Summer_Project_Week: RWV mapping support|Real World Value Mapping Support]] (Ethan, Andrey, Andras, Steve, Jim)
−
*[[2014_Project_Week:Ultrasound Visualization and Navigation in Neurosurgery|Ultrasound Visualization and Navigation in Neurosurgery]] (Matthew Toews, Alireza Mehrtash, Csaba Pinter, Andras Lasso, Steve Pieper, William M. Wells III)
+
* [[2014_Summer_Project_Week: CLI Derived DICOM Data| Proper Formatting of DICOM Derived Data from CLI]] (Steve, Andrey, Jim, {Michael and David remotely})
−
*[[2014_Project_Week:PercutaneousApproachAnalysis| Percutaneous Approach Analysis]] (Atsushi Yamada, Junichi Tokuda, Koichiro Murakami)
+
* [[2014_Summer_Project_Week: DICOM SEG Conversion to Support Archival of QIN Grand Challenges Results|DICOM SEG Conversion to Support Archival of QIN Grand Challenges Results]] (Jayashree, Andrey, Steve, {David remotely})
−
*[[2014_Project_Week:EndoscopeConsole| Endoscope Console]] (Atsushi Yamada, Junichi Tokuda, Laurent Chauvin)
+
* [[2014_Summer_Project_Week: ColorBar support|Color Bar Support for Slice Views]] (Alireza, Andrey, Steve, Kevin)
−
*[[2014_Project_Week:Statistical Shape Model for robotic spine surgery| Statistical Shape Model for robotic spine surgery]] (Marine Clogenson, ???)
+
* [[2014_Summer_Project_Week: Slicer DICOM|Slicer DICOM Improvements]] (Alireza, Andrey, Steve, Ron)
−
*[[2014_Project_Week:ImmersiveVR| Immersive VR devices]] (Franklin King, Andras Lasso)
 
  
−
==Radiation Therapy==
+
==Feature Extraction==
−
*[[2014_Project_Week:DICOM_RT|DICOM RT Export]] (Greg Sharp, Kevin Wang)
+
*[[2014_Summer_Project_Week:Tumor_DCE-MRI_Segmentation | Breast Tumor Segmentation]] (Vivek Narayan, Jay Jagadeesan)
−
*[[2014_Project_Week:DICOM_SRO|DICOM Spatial Registration Export]] (Greg Sharp, Kevin Wang)
+
*[[2014_Summer_Project_Week:Tumor_Heterogeneity_Analysis | Breast Tumor Heterogeneity Analysis]] (Vivek Narayan, Jay Jagadeesan)
−
*[[2014_Project_Week:Registration_Evaluation|Interactive Registration and Evaluation]] (Kevin Wang, Steve Pieper, Greg Sharp)
+
*[[2014_Summer_Project_Week: Quantitative image feature extraction | Quantitative Image Feature Extraction in Non-Small Cell Lung Cancer]] (Hugo Aerts)
−
*[[2014_Project_Week:External_Beam_Planning|External Beam Planning Visualization]] (Kevin Wang, Greg Sharp, Csaba Pinter)
+
*[[2014_Summer_Project_Week:Invariant_Feature_Extraction_Slicer | Invariant Feature Methods in Slicer]] (Matthew Toews, Nicole Aucoin, Hans Johnson, Sandy Wells)
  
−
==TMJ-OA==
+
==Additional Brain Image Analysis==
−
* [[2014_Winter_Project_Week:Constrain Fiducial along Suface|Constrain Fiducial along Suface]] (Vinicius Boen, Nicole Aucoin, Beatriz Paniagua)
+
*[[2014_Summer_Project_Week:Slicer_Murin_Shape_Analysis | Shape Analysis for the Developing Murine Skull]] (Murat Maga, Ryan Young, Seattle Chidren's Hospital).
−
* [[2014_Winter_Project_Week:Cropping Multiple Surfaces|Cropping multiple surfaces simultaneously]] (Alexander, Jc, Steve, Vinicius, Beatriz Paniagua)
+
*[[2014_Summer_Project_Week:Slicer_LDDMM_Shape_Analysis | Slicer Interface to LDDMM Shape Anlaysis]] (Saurabh Jain, JHU; Steve Pieper, Isomics; Josh Cates, SCI, Utah; Hans Johnson, Iowa; Martin Styner, UNC)
−
* [[2014_Winter_Project_Week:Color Code Tables|Color Coded Tables]] (Vinicius Boen, Beatriz Paniagua, Nicole Aucoin, Steve Pieper, Francois Budin)
+
*[[2014_Summer_Project_Week:Atlas Selection | Atlas Selection]] (Kanglin Chen, Gregory Sharp)
−
* [[2014_Winter_Project_Week:4DShape Analysis of mandibular changes|4DShape Analysis of mandibular changes]] (Vinicius Boen, James Fishbaugh, Guido Gerig)
+
*[[2014_Summer_Project_Week:CAD_Toolbox_for_Neurological_Disorders | CAD Toolbox for Neurological Disorders]] (Sidong Liu, Siqi Liu, Fan Zhang, Yang Song, Weidong Cai, Sonia Pujol, Ron Kikinis)
 +
*[[2014_Summer_Project_Week:Longitudinal_patient_specific_DTI_analysis | Longitudinal Patient-specific DTI Analysis using Slicer for Neonatal Asphyxia]] (Anuja Sharma, SCI, Utah; Francois Budin, UNC; Martin Styner, UNC; Guido Gerig, SCI, Utah)
 +
*[[2014_Summer_Project_Week:Pipeline_Visualization | Pipeline Visualization]] (Ramesh, Adrian, Polina)
  
−
==Chronic Obstructive Pulmonary Disease ==
+
==Slicer4 Extensions==
−
* [[2014_Winter_Project_Week:CIP Core|Chest Imaging Platform (CIP) - Core Infrastructure]] (Raul San Jose, Rola Harmouche, Pietro Nardelli, James Ross)
 
−
* [[2014_Winter_Project_Week:CIP Infrastructure Testing and SuperBuild|CIP Testing and SuperBuild]] (James Ross, Raul San Jose)
 
−
* [[2014_Winter_Project_Week:Slicer CIP Slicer MRML| Slicer CIP- MRML consolidation]] (Pietro Nardelli, Rola Harmouche,  James Ross, Raul San Jose)
 
−
* [[2014_Winter_Project_Week:Slicer CIP  Modules| Slicer CIP- Modules]] (Rola Harmouche, Pietro Nardelli, James Ross, Raul San Jose)
 
  
−
==[http://qiicr.org QIICR]==
+
*[[2014_Summer_Project_Week:Multidim Data| Multidimensional Data]] (Andras Lasso, Kevin Wang)
 +
*[[2014_Summer_Project_Week:DICOM-SRO import/export| DICOM-SRO import/export]] (Kevin Wang, Greg Sharp)
 +
*[[2014_Summer_Project_Week:DRAMMS_Slicer| Integrating DRAMMS Deformable Registration into Slicer]] (Yangming Ou, Steve Pieper, Andriy Fedorov, Tina Kapur, Christos Davatzikos, Ron Kikinis, Randy Gollub, Jayashree Kalpathy-Cramer)
  
−
*[[2014_Project_Week:4D_NIfTI_Multivolume|4D NIfTI Multivolume Support]] (Jayashree, Andrey, Jim, John)
+
==TMJOA RO1 - Collaboration with NAMIC==
−
*[[2014_Project_Week:RT_FormatConversions|RT and ITK Format Conversions]] (Jayashree, Andras, Csaba. John)
+
*[[2014_Summer_Project_Week:TMJOA| TMJOA]] (Francois Budin, Beatriz Paniagua, Lucia Cevidanes, Nicole Aucoin, Steve Pieper, Jean-Christophe Fillion-Robin, Alex Yarmarkovich)
−
*[[2014_Project_Week:PkModeling_user_tool|User module for DCE modeling]] (Andrey, Jayashree, Jim, Steve, Ron)
 
−
*[[2014_Project_Week:DICOM_enhanced_multiframe|DICOM enhanced multiframe object support]] (Andrey, Alireza, David Clunie, Jayashree, Steve, Reinhard, Jim, Rick Herrick)
 
−
*[[2014_Project_Week:Quantitative_Index_Computation|Quantitative Index Computation]] (Ethan Ulrich, Reinhard Beichel, Nicole, Andrey, Jim)
 
−
*[[2014_Project_Week:TCIA Browser Extension in Slicer|TCIA Browser Extension in Slicer]] (Alireza, Andrey, Steve, Ron)
 
−
*[[2014_Project_Week:Slicer DICOM Module Interface Redesign|Slicer DICOM Module Interface Redesign]] (Alireza, Andrey, Steve, Ron, Rick Herrick)
 
  
 
==Infrastructure==
 
==Infrastructure==
−
*[[2014_Project_Week:MultidimensionalDataSupport|Multidimensional data support]] (Andras Lasso, Andriy Fedorov, Steve Pieper, JC, Kevin Wang, Rick Herrick)
+
* [[2014_Summer_Project_Week: Chronicle| Chronicle]] (Steve)
−
*[[2014_Project_Week:MarkupsModule|Markups Module]] (Nicole Aucoin, Rick Herrick)
+
* [[2014_Summer_Project_Week: Factory and Testing Process Post NA-MIC| Post NA-MIC Factory and Testing]] (Steve, Jc, Ron)
−
* [[2014_Winter_Project_Week:Logging|Logging (standardization, logging to file)]] (Jc, Andras Lasso, Nicole Aucoin, Steve Pieper, Csaba Pinter, ???, Rick Herrick)
+
* [[2014_Summer_Project_Week: Volume Registration|Volume Registration]] (Steve, Greg, Marcel, Jim)
−
*[[2014_Project_Week:CLI|CLI]] (Jim Miller, Matt McCormick, Nicole Aucoin, Steve Pieper, Jc)
+
* [[2014_Summer_Project_Week:Markups | Markups]] (Nicole Aucoin)
−
* [[2014_Winter_Project_Week:Steered Registration|Steered Registration (LandmarkRegistration module)]] (Steve, Greg, Kevin, Vinicius, Marcel)
+
*[[2014_Summer_Project_Week:Pluggable Label Statistics |Pluggable Label Statistics]] (Andrey , Ethan, Steve, Brad, Jim)
−
* [[2014_Winter_Project_Week:MRB Extension Dependencies|MRB Extension Dependencies]] (Steve, Jc, Jim, Nicole, Alex)
+
*[[2014_Summer_Project_Week:Subject_hierarchy_integration | Subject Hierarchy Integration]] (Csaba, Steve, Jc, Andras)
−
* [[2014_Winter_Project_Week:SubjectHierarchy|Subject hierarchy]] (Csaba Pinter, Andras Lasso, Steve Pieper, Jc, Jayashree, John, Alireza, Andrey)
+
*[[2014_Summer_Project_Week:Contours | Contours]] (Adam Rankin, Csaba, Andras, Steve, Jc)
−
* [[2014_Winter_Project_Week:IntegrationOfContourObject|Integration of Contour object]] (Csaba Pinter, Andras Lasso, Steve Pieper, ???)
+
*[[2014_Summer_Project_Week:Parameter Node Serialization | Parameter Node Serialization]] (Kevin Wang, Steve, Jim, Jc, Matt, Nicole)
−
* [[2014_Winter_Project_Week:NonlinearTransforms|Integration nonlinear transforms]] (Alex Yarmarkovich, Csaba Pinter, Andras Lasso, Steve Pieper, ???)
+
*[[2014_Summer_Project_Week:Self-tests for non-linear transforms | Self-tests for Non-linear Transforms]] (Xining Du)
−
* [[2014_Winter_Project_Week:ParameterSerialization | JSON Parameter Serialization]] (Matt McCormick, Steve Pieper, Jim Miller)
+
*[[2014_Summer_Project_Week:Slicer Tutorial Updates | Slicer Tutorial Updates]] (Parth Amin, Farukh Kohistan, Sonia Pujol)
−
* [[2014_Winter_Project_Week:XNATSlicerLink| 3DSlicer annotations in XNAT]] (Erwin Vast, Nicole Aucoin, Andrey Fedorov, Rick Herrick)
+
 
−
* [[2014_Winter_Project_Week:PlanarImage|Planar Images]] (Franklin King, Csaba Pinter, Andras Lasso)
+
== '''Logistics''' ==
 +
 
 +
*'''Dates:''' June 23-27, 2014.
 +
*'''Location:''' [[MIT_Project_Week_Rooms| Stata Center / RLE MIT]].
 +
*'''REGISTRATION:''' https://www.regonline.com/namic2014summerprojectweek. Please note that  as you proceed to the checkout portion of the registration process, RegOnline will offer you a chance to opt into a free trial of ACTIVEAdvantage -- click on "No thanks" in order to finish your Project Week registration.
 +
*'''Registration Fee:''' $300.
 +
*'''Hotel:''' Similar to previous years, no rooms have been blocked in a particular hotel.
 +
*'''Room sharing''': If interested, add your name to the list:  [[2014_Summer_Project_Week/RoomSharing|here]]
 +
 
 +
==Registrants==
 +
 
 +
Do not add your name to this list - it is maintained by the organizers based on your paid registration.  ([https://www.regonline.com/namic2014summerprojectweek  Please click here to register.])
 +
 
 +
# Hugo Aerts :: Dana Farber Cancer Institute :: hugo_aerts at dfci.harvard.edu
 +
# Nassim Alikacem :: Brigham and Women's Hospital :: Nassim.Alikacem at gmail.com
 +
# Parth Amin :: Wentworth Institute of Technology :: aminp at wit.edu
 +
# Peter Anderson :: Retired :: traneus at verizon.net
 +
# Nicole Aucoin :: Brigham and Women's Hospital :: nicole at bwh.harvard.edu
 +
# Eva Breininger :: Brigham and Women's Hospital :: ebreininger at partners.org
 +
# Francois Budin :: University of North Carolina :: fbudin at unc.edu
 +
# Saskia Camps :: Brigham and Women's Hospital :: saskiacamps at gmail.com
 +
# Lucia Cevidanes :: University of Michigan :: luciacev at umich.edu
 +
# Laurent Chauvin :: Brigham and Women's Hospital :: lchauvin at bwh.harvard.edu
 +
# Kanglin Chen :: Fraunhofer MEVIS, Bremen :: kanglin.chen at mevis.fraunhofer.de
 +
# Adrian Dalca :: Massachusetts Institute of Technology :: adalca at MIT.EDU
 +
# Alexander Derksen :: Fraunhofer MEVIS, Bremen :: alexander.derksen at mevis.fraunhofer.de
 +
# Maxime Desplanques :: Massachusetts General Hospital :: maxime.desplanques at cnao.it
 +
# Fotis Drakopoulos :: Old Dominion University :: fdrakopo at gmail.com
 +
# Sneha Durgapal :: Brigham and Women's Hospital :: durgapalsneha at gmail.com
 +
# Andriy Fedorov :: Brigham and Women's Hospital :: fedorov at bwh.harvard.edu
 +
# Jean-Christophe Fillion-Robin :: Kitware, Inc. :: jchris.fillionr at kitware.com
 +
# James Fishbaugh :: University of Utah :: jfishbau at sci.utah.edu
 +
# Jessica Forbes :: University of Iowa :: jessica-forbes at uiowa.edu
 +
# Polina Golland :: Massachusetts Institute of Technology :: polina at csail.mit.edu
 +
# Jeffrey Grethe :: UCSD :: jgrethe at ncmir.ucsd.edu
 +
# Rola Harmouche :: Brigham and Women's Hospital :: rolaharmouche at gmail.com
 +
# Nobuhiko Hata :: Brigham and Women's Hospital :: hata at bwh.harvard.edu
 +
# Jayender Jagadeesan :: Brigham and Women's Hospital :: jayender at bwh.harvard.edu
 +
# Saurabh Jain :: Johns Hopkins University :: saurabh at cis.jhu.edu
 +
# Hans Johnson :: University of Iowa :: hans-johnson at uiowa.edu
 +
# Jayashree Kalpathy-Cramer :: Massachusetts General Hospital :: kalpathy at nmr.mgh.harvard.edu
 +
# Tina Kapur :: Brigham and Women's Hospital :: tkapur at bwh.harvard.edu
 +
# Ron Kikinis :: Brigham and Women's Hospital :: kikinis at bwh.harvard.edu
 +
# Eun Young Regina Kim :: University of Iowa :: eunyoung-kim at uiowa.edu
 +
# Franklin King :: Queen's University :: franklin.king at queensu.ca
 +
# Tassilo Klein :: Brigham and Women's Hospital :: TJKlein at bwh.harvard.edu
 +
# Farukh Kohistani :: Brigham and Women's Hospital :: kohistan at bc.edu
 +
# Ivan Kolesov :: Stony Brook University :: ivan.kolesov1 at gmail.com
 +
# Robin Kouver :: Brigham and Women's Hospital :: r.kouver at gmail.com
 +
# Andras Lasso :: Queen's University :: lasso at queensu.ca
 +
# Yangming Li :: University of Washington :: ymli81 at uw.edu
 +
# Sidong Liu :: University of Sydney :: sliu at bwh.harvard.edu
 +
# Siqi Liu :: University of Sydney :: sliu4512 at uni.sydney.edu.au
 +
# Bradley Lowekamp :: National Library of Medicine :: blowekamp at mail.nih.gov
 +
# Murat Maga :: Seattle Children's Research Institute :: maga at uw.edu
 +
# Katie Mastrogiacomo :: Brigham and Women's Hospital :: kmast at bwh.harvard.edu
 +
# Alireza Mehrtash :: Brigham and Women's Hospital :: mehrtash at bwh.harvard.edu
 +
# Dominik Meier :: Brigham and Women's Hospital :: meier at bwh.harvard.edu
 +
# James Miller :: General Electric :: millerjv at ge.com
 +
# Luiz Otavio Murta :: Brigham and Women's Hospital :: lmurta at partners.org
 +
# Vivek Narayan :: Brigham and Women's Hospital :: narayan.vivek9 at gmail.com
 +
# Pietro Nardelli :: University College Cork :: pietro at bwh.harvard.edu
 +
# Isaiah Norton :: Brigham and Women's Hospital :: isaiah.norton at gmail.com
 +
# Jorge Onieva :: Brigham and Women's Hospital :: jorgeonieva at gmail.com
 +
# Yangming Ou :: Massachusetts General Hospital :: yangming.ou at uphs.upenn.edu
 +
# Danielle Pace :: Massachusetts Institute of Technology :: dfpace at mit.edu
 +
# Keryn Palmer :: Brigham and Women's Hospital :: kpalmer5 at partners.org
 +
# Nirav Patel :: Worcester Polytechnic Institute :: napatel at wpi.edu
 +
# Tobias Penzkofer :: Brigham and Women's Hospital :: pt at bwh.harvard.edu
 +
# Steve Pieper :: Isomics, Inc. :: pieper at isomics.com
 +
# Csaba Pinter :: Queen's University :: csaba.pinter at queensu.ca
 +
# Marcel Prastawa :: General Electric :: marcel.prastawa at ge.com
 +
# Somia Pujol :: Brigham and Women's Hospital :: spujol at bwh.harvard.edu
 +
# Adam Rankin :: Queen's University :: rankin at queensu.ca
 +
# Aymeric Reshef :: Brigham and Women's Hospital :: areshef at bwh.harvard.edu
 +
# Tammy Riklin Raviv :: Ben-Gurion University :: rrtammy at ee.bgu.ac.il
 +
# Rahul Sastry :: Brigham and Women's Hospital :: rahul_sastry at hms.harvard.edu
 +
# Peter Savadjiev :: Brigham and Women's Hospital :: petersv at bwh.harvard.edu
 +
# Gregory Sharp :: Massachusetts General Hospital :: gcsharp at mgh.harvard.edu
 +
# Emylin Sousa :: Brigham and Women's Hospital :: emylin.sousa at gmail.com
 +
# Ramesh Sridharan :: Massachusetts Institute of Technology :: rameshvs at csail.mit.edu
 +
# Clare Tempany :: Brigham and Women's Hospital :: ctempany at bwh.harvard.edu
 +
# Matthew Toews :: Brigham and Women's Hospital :: mt at bwh.harvard.edu
 +
# Ethan Ulrich :: University of Iowa :: ethan-ulrich at uiowa.edu
 +
# Tamas Ungi :: Queen's University :: ungi at queensu.ca
 +
# Kevin Wang :: Princess Margaret Cancer Centre :: kevin.wang at rmp.uhn.ca
 +
# David Welch :: University of Iowa :: david-welch at uiowa.edu
 +
# Sandy Wells :: Brigham and Women's Hospital :: sw at bwh.harvard.edu
 +
# Jason White :: Brigham and Women's Hospital :: white at bwh.harvard.edu
 +
# Alexander Yarmarkovich :: Isomics, Inc. :: alexy at bwh.harvard.edu
 +
# Ryan Young :: Seattle Children's Research Institute :: ryan.young at seattlechildrens.org
 +
# Paolo Zaffino :: Magna Græcia University of Catanzaro :: p.zaffino at unicz.it
 +
# Chenxi Zhang :: Brigham and Women's Hospital :: chenxizhang at fudan.edu.cn
 +
# Fan Zhang :: University of Sydney :: fzha8048 at uni.sydney.edu.au

Latest revision as of 12:14, 30 June 2017

Home < 2014 Summer Project Week

Back to Events

PW-MIT2014.png

Welcome to the web page for the 19th Project Week!

opening session

opening session

Summary

The most recent project week was the 19th event in the series. It was held June 23-27, 2014 at MIT. It recorded 81 registered attendees, who worked on 66 projects. These attendees represented 21 academic sites (Brigham and Women’s Hospital, Massachusetts General Hospital, MIT, WPI, University of Utah, University of Iowa, University of Michigan, University of North Carolina at Chapel Hill, Queen’s University, University of Sydney, University Magna Graecia of Catanzaro, Old Dominion University, University of CA San Diego, Johns Hopkins University, Stony Brook University, University of Washington, NIH, Seattle Children's Research Institute, University College Cork, Ben-Gurion University, Princess Margaret Cancer Centre) and 4 companies (GE Global Research, Kitware, Fraunhofer MEVIS, Isomics Inc).

A summary of all past Project Events.

Logistics

  • Dates: June 23-27, 2014.
  • Location: MIT, Cambridge, MA.

Agenda

Time Monday, June 23 Tuesday, June 24 Wednesday, June 25 Thursday, June 26 Friday, June 27
Project Presentations NA-MIC Update Day IGT Day Reporting Day
8:30am Breakfast Breakfast Breakfast Breakfast (Stata Building 4th Floor R&D Common Dining Area)
9am-12pm 10-11:30am Breakout Session:
DICOM (Steve Pieper)

Star

11am-12noon Breakout Session: Slicer for users (Ron Kikinis)

9:00-10:30am Tutorial Contest Presentations (Sonia Pujol)

Grier Rooms
----------------------------------------
10am-12pm: Breakout Session:
Image-Guided Therapy - Neurosurgery (Alexandra Golby, Tina Kapur)
Star

10am-12pm: Project Progress Updates (Stata Building 4th Floor R&D Common Dining Area)


----------------------------------------
12pm Tutorial Contest Winner Announcement (Stata Building 4th Floor R&D Common Dining Area)

12pm-1pm Lunch Lunch Lunch Lunch Lunch boxes; Adjourn by 1:30pm
1pm-5:30pm 1-1:05pm: Ron Kikinis: Welcome

Grier Rooms
----------------------------------------
1:05-3:30pm: Project Introductions (all Project Leads) Grier Rooms
----------------------------------------
3:30-4:30pm Slicer4 Extensions (Jean-Christophe Fillion-Robin)
Grier Room (Left)

1-3pm: Breakout Session:
QIICR (Andrey Fedorov)

Kiva

1-2:30pm: Breakout Session:
Contours (Adam Rankin, Csaba Pinter)

Kiva

1-3pm: Breakout Session:
Image-Guided Therapy - Prostate Interventions (Clare Tempany, Noby Hata)

Star
----------------------------------------
5:30pm Adjourn for the day Adjourn for the day Adjourn for the day Adjourn for the day

Background

Project Week is a hands on activity -- programming using the open source NA-MIC Kit, algorithm design, and clinical application -- that has become one of the major events in the NA-MIC, NCIGT, and NAC calendars. It is held in the summer at MIT, typically the last week of June, and a shorter version is held in Salt Lake City in the winter, typically the second week of January.

Active preparation begins 6-8 weeks prior to the meeting, when a kick-off teleconference is hosted by the NA-MIC Engineering, Dissemination, and Leadership teams, the primary hosts of this event. Invitations to this call are sent to all NA-MIC members, past attendees of the event, as well as any parties who have expressed an interest in working with NA-MIC. The main goal of the kick-off call is to get an idea of which groups/projects will be active at the upcoming event, and to ensure that there is sufficient NA-MIC coverage for all. Subsequent teleconferences allow the hosts to finalize the project teams, consolidate any common components, and identify topics that should be discussed in breakout sessions. In the final days leading upto the meeting, all project teams are asked to fill in a template page on this wiki that describes the objectives and plan of their projects.

The event itself starts off with a short presentation by each project team, driven using their previously created description, and allows all participants to be acquainted with others who are doing similar work. In the rest of the week, about half the time is spent in breakout discussions on topics of common interest of subsets of the attendees, and the other half is spent in project teams, doing hands-on programming, algorithm design, or clinical application of NA-MIC kit tools. The hands-on activities are done in 10-20 small teams of size 3-5, each with a mix of experts in NA-MIC kit software, algorithms, and clinical. To facilitate this work, a large room is setup with several tables, with internet and power access, and each team gathers on a table with their individual laptops, connects to the internet to download their software and data, and is able to work on their projects. On the last day of the event, a closing presentation session is held in which each project team presents a summary of what they accomplished during the week.

Please make sure that you are on the na-mic-project-week mailing list

Projects

Image-Guided Therapy

Huntington's Disease

TBI

Stroke

Cardiac

Chronic Obstructive Pulmonary Disease, Lung, Chest

Head and Neck Cancer / Radiotherapy

QIICR

Feature Extraction

Additional Brain Image Analysis

Slicer4 Extensions

TMJOA RO1 - Collaboration with NAMIC

  • TMJOA (Francois Budin, Beatriz Paniagua, Lucia Cevidanes, Nicole Aucoin, Steve Pieper, Jean-Christophe Fillion-Robin, Alex Yarmarkovich)

Infrastructure

Logistics

  • Dates: June 23-27, 2014.
  • Location: Stata Center / RLE MIT.
  • REGISTRATION: https://www.regonline.com/namic2014summerprojectweek. Please note that as you proceed to the checkout portion of the registration process, RegOnline will offer you a chance to opt into a free trial of ACTIVEAdvantage -- click on "No thanks" in order to finish your Project Week registration.
  • Registration Fee: $300.
  • Hotel: Similar to previous years, no rooms have been blocked in a particular hotel.
  • Room sharing: If interested, add your name to the list: here

Registrants

Do not add your name to this list - it is maintained by the organizers based on your paid registration. (Please click here to register.)

  1. Hugo Aerts :: Dana Farber Cancer Institute :: hugo_aerts at dfci.harvard.edu
  2. Nassim Alikacem :: Brigham and Women's Hospital :: Nassim.Alikacem at gmail.com
  3. Parth Amin :: Wentworth Institute of Technology :: aminp at wit.edu
  4. Peter Anderson :: Retired :: traneus at verizon.net
  5. Nicole Aucoin :: Brigham and Women's Hospital :: nicole at bwh.harvard.edu
  6. Eva Breininger :: Brigham and Women's Hospital :: ebreininger at partners.org
  7. Francois Budin :: University of North Carolina :: fbudin at unc.edu
  8. Saskia Camps :: Brigham and Women's Hospital :: saskiacamps at gmail.com
  9. Lucia Cevidanes :: University of Michigan :: luciacev at umich.edu
  10. Laurent Chauvin :: Brigham and Women's Hospital :: lchauvin at bwh.harvard.edu
  11. Kanglin Chen :: Fraunhofer MEVIS, Bremen :: kanglin.chen at mevis.fraunhofer.de
  12. Adrian Dalca :: Massachusetts Institute of Technology :: adalca at MIT.EDU
  13. Alexander Derksen :: Fraunhofer MEVIS, Bremen :: alexander.derksen at mevis.fraunhofer.de
  14. Maxime Desplanques :: Massachusetts General Hospital :: maxime.desplanques at cnao.it
  15. Fotis Drakopoulos :: Old Dominion University :: fdrakopo at gmail.com
  16. Sneha Durgapal :: Brigham and Women's Hospital :: durgapalsneha at gmail.com
  17. Andriy Fedorov :: Brigham and Women's Hospital :: fedorov at bwh.harvard.edu
  18. Jean-Christophe Fillion-Robin :: Kitware, Inc. :: jchris.fillionr at kitware.com
  19. James Fishbaugh :: University of Utah :: jfishbau at sci.utah.edu
  20. Jessica Forbes :: University of Iowa :: jessica-forbes at uiowa.edu
  21. Polina Golland :: Massachusetts Institute of Technology :: polina at csail.mit.edu
  22. Jeffrey Grethe :: UCSD :: jgrethe at ncmir.ucsd.edu
  23. Rola Harmouche :: Brigham and Women's Hospital :: rolaharmouche at gmail.com
  24. Nobuhiko Hata :: Brigham and Women's Hospital :: hata at bwh.harvard.edu
  25. Jayender Jagadeesan :: Brigham and Women's Hospital :: jayender at bwh.harvard.edu
  26. Saurabh Jain :: Johns Hopkins University :: saurabh at cis.jhu.edu
  27. Hans Johnson :: University of Iowa :: hans-johnson at uiowa.edu
  28. Jayashree Kalpathy-Cramer :: Massachusetts General Hospital :: kalpathy at nmr.mgh.harvard.edu
  29. Tina Kapur :: Brigham and Women's Hospital :: tkapur at bwh.harvard.edu
  30. Ron Kikinis :: Brigham and Women's Hospital :: kikinis at bwh.harvard.edu
  31. Eun Young Regina Kim :: University of Iowa :: eunyoung-kim at uiowa.edu
  32. Franklin King :: Queen's University :: franklin.king at queensu.ca
  33. Tassilo Klein :: Brigham and Women's Hospital :: TJKlein at bwh.harvard.edu
  34. Farukh Kohistani :: Brigham and Women's Hospital :: kohistan at bc.edu
  35. Ivan Kolesov :: Stony Brook University :: ivan.kolesov1 at gmail.com
  36. Robin Kouver :: Brigham and Women's Hospital :: r.kouver at gmail.com
  37. Andras Lasso :: Queen's University :: lasso at queensu.ca
  38. Yangming Li :: University of Washington :: ymli81 at uw.edu
  39. Sidong Liu :: University of Sydney :: sliu at bwh.harvard.edu
  40. Siqi Liu :: University of Sydney :: sliu4512 at uni.sydney.edu.au
  41. Bradley Lowekamp :: National Library of Medicine :: blowekamp at mail.nih.gov
  42. Murat Maga :: Seattle Children's Research Institute :: maga at uw.edu
  43. Katie Mastrogiacomo :: Brigham and Women's Hospital :: kmast at bwh.harvard.edu
  44. Alireza Mehrtash :: Brigham and Women's Hospital :: mehrtash at bwh.harvard.edu
  45. Dominik Meier :: Brigham and Women's Hospital :: meier at bwh.harvard.edu
  46. James Miller :: General Electric :: millerjv at ge.com
  47. Luiz Otavio Murta :: Brigham and Women's Hospital :: lmurta at partners.org
  48. Vivek Narayan :: Brigham and Women's Hospital :: narayan.vivek9 at gmail.com
  49. Pietro Nardelli :: University College Cork :: pietro at bwh.harvard.edu
  50. Isaiah Norton :: Brigham and Women's Hospital :: isaiah.norton at gmail.com
  51. Jorge Onieva :: Brigham and Women's Hospital :: jorgeonieva at gmail.com
  52. Yangming Ou :: Massachusetts General Hospital :: yangming.ou at uphs.upenn.edu
  53. Danielle Pace :: Massachusetts Institute of Technology :: dfpace at mit.edu
  54. Keryn Palmer :: Brigham and Women's Hospital :: kpalmer5 at partners.org
  55. Nirav Patel :: Worcester Polytechnic Institute :: napatel at wpi.edu
  56. Tobias Penzkofer :: Brigham and Women's Hospital :: pt at bwh.harvard.edu
  57. Steve Pieper :: Isomics, Inc. :: pieper at isomics.com
  58. Csaba Pinter :: Queen's University :: csaba.pinter at queensu.ca
  59. Marcel Prastawa :: General Electric :: marcel.prastawa at ge.com
  60. Somia Pujol :: Brigham and Women's Hospital :: spujol at bwh.harvard.edu
  61. Adam Rankin :: Queen's University :: rankin at queensu.ca
  62. Aymeric Reshef :: Brigham and Women's Hospital :: areshef at bwh.harvard.edu
  63. Tammy Riklin Raviv :: Ben-Gurion University :: rrtammy at ee.bgu.ac.il
  64. Rahul Sastry :: Brigham and Women's Hospital :: rahul_sastry at hms.harvard.edu
  65. Peter Savadjiev :: Brigham and Women's Hospital :: petersv at bwh.harvard.edu
  66. Gregory Sharp :: Massachusetts General Hospital :: gcsharp at mgh.harvard.edu
  67. Emylin Sousa :: Brigham and Women's Hospital :: emylin.sousa at gmail.com
  68. Ramesh Sridharan :: Massachusetts Institute of Technology :: rameshvs at csail.mit.edu
  69. Clare Tempany :: Brigham and Women's Hospital :: ctempany at bwh.harvard.edu
  70. Matthew Toews :: Brigham and Women's Hospital :: mt at bwh.harvard.edu
  71. Ethan Ulrich :: University of Iowa :: ethan-ulrich at uiowa.edu
  72. Tamas Ungi :: Queen's University :: ungi at queensu.ca
  73. Kevin Wang :: Princess Margaret Cancer Centre :: kevin.wang at rmp.uhn.ca
  74. David Welch :: University of Iowa :: david-welch at uiowa.edu
  75. Sandy Wells :: Brigham and Women's Hospital :: sw at bwh.harvard.edu
  76. Jason White :: Brigham and Women's Hospital :: white at bwh.harvard.edu
  77. Alexander Yarmarkovich :: Isomics, Inc. :: alexy at bwh.harvard.edu
  78. Ryan Young :: Seattle Children's Research Institute :: ryan.young at seattlechildrens.org
  79. Paolo Zaffino :: Magna Græcia University of Catanzaro :: p.zaffino at unicz.it
  80. Chenxi Zhang :: Brigham and Women's Hospital :: chenxizhang at fudan.edu.cn
  81. Fan Zhang :: University of Sydney :: fzha8048 at uni.sydney.edu.au
Retrieved from "https://www.na-mic.org/w/index.php?title=2014_Summer_Project_Week&oldid=96981"