Difference between revisions of "2015 Summer Project Week"

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__NOTOC__
 
__NOTOC__
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Back to [[Events]]
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A [[Project_Events#Past_Project_Weeks|summary]] of all past Project Events.
  
 
[[image:PW-Summer2015.png|300px]]
 
[[image:PW-Summer2015.png|300px]]
 
<br>
 
<br>
  
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+
=Welcome to the web page for the 21st Project Week!=
 +
==Summary==
 +
The 21st PROJECT EVENT was held on June 21-24, 2015 in Barcelona, Spain, in conjunction with the CARS conference (http://www.cars-int.org/).  It recorded 55 registered attendees, who worked on 39 projects. These attendees represented 20 academic sites (Boston Children’s Hospital, Brigham and Women’s Hospital, Charité University Hospital Berlin (Germany), École de Technologie Supérieure, (Canada), École supérieure d'informatique  (Belgium), Fraunhofer (Germany), Leibniz University, Hannover (Germany),  Magna Graecia University (Italy),Massachusetts General Hospital, Queen’s University (Canada), Robarts Research Institute (Canada), Semmelweis Medical University (Hungary), Universidad Autonoma del Estado de Mexico, Universidad Carlos III de Madrid, University of Groningen (Netherlands), Universidad de la Republica (Uruguay), Universidad Rey Juan Carlos (Madrid), Universidad Politécnica de Madrid, University of Strasbourg (France), University of Utah, and 7 companies (Kitware,  Isomics Inc,Open Connections, Galgo Medical, BK Medical ApS, ICM, Perk Lab).
 +
 
==Logistics==
 
==Logistics==
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*'''Dates:''' June 21-24, 2015.
 
*'''Dates:''' June 21-24, 2015.
 
*'''Location:'''  [http://www.nh-collection.com/hotel/nh-collection-barcelona-constanza NH Collection Constanza Hotel, Barcelona, Spain]
 
*'''Location:'''  [http://www.nh-collection.com/hotel/nh-collection-barcelona-constanza NH Collection Constanza Hotel, Barcelona, Spain]
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*'''Registration Fee:''' None. The organizers will cover the charge for the conference room, while all attendees are responsible for their own hotel rooms as well as food.
 
*'''Registration Fee:''' None. The organizers will cover the charge for the conference room, while all attendees are responsible for their own hotel rooms as well as food.
 
*'''Hotel:''' You are welcome to book a room using the CARS 2015 conference services ([http://www.cars-int.org/fileadmin/templates/download/2015/CARS_2015_accomondation.pdf Click here for form])
 
*'''Hotel:''' You are welcome to book a room using the CARS 2015 conference services ([http://www.cars-int.org/fileadmin/templates/download/2015/CARS_2015_accomondation.pdf Click here for form])
 +
*To attend the CARS meeting, please visit [http://www.cars-int.org/ http://www.cars-int.org/]
 +
*Premium Network at Berlin Room:
 +
**username: EVENT/CARS2015
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**Password=CARS
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*Please get a badge for CARS, even if you did not register for the CARS conference. Otherwise you will not be able to come in tomorrow.
  
 
==Agenda==
 
==Agenda==
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|-style="background:#b0d5e6;color:#02186f"  
 
|-style="background:#b0d5e6;color:#02186f"  
 
!style="width:10%" |Time
 
!style="width:10%" |Time
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!style="width:18%" |Sunday, June 21
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!style="width:18%" |Sunday, June 21  
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!style="width:18%" |Monday, June 22
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!style="width:18%" |Monday, June 22 <br> Room Berlin
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!style="width:18%" |Tuesday, June 23
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!style="width:18%" |Tuesday, June 23 <br> Room Berlin
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!style="width:18%" |Wednesday, June 24
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!style="width:18%" |Wednesday, June 24 <br> Room Berlin
 
|-
 
|-
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|bgcolor="#ffffdd"|'''10:00am-3:00pm:'''
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|bgcolor="#ffffdd"|'''9:00am-3:00pm:'''
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|rowspan=3 valign=bottom|<hr>'''6pm''' Meeting with All Participants
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|rowspan=3 valign=bottom|<hr>'''6pm''' Meeting with All Participants in Hotel Constanza Lobby
 
|'''10:00-11am:''' <font color="#503020">Rapid Introduction of all Projects and Teams <br>
 
|'''10:00-11am:''' <font color="#503020">Rapid Introduction of all Projects and Teams <br>
 
'''11am-3pm''' <font color="#503020">Work <br>
 
'''11am-3pm''' <font color="#503020">Work <br>
  
 
|
 
|
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'''10:00am-11am:''' <font color="#503020">'''Breakout Session:'''</font><br>[[2014_Project_Week_Breakout_Session: Slicer for users| Slicer for users]] (Ron Kikinis) <br>
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'''10:00am-11am:''' <font color="#503020">'''Breakout Session:'''</font> - <br>[[2014_Project_Week_Breakout_Session: Slicer for users| Ask expert physicians]] (Ron Kikinis, Clare Tempany) <br>
 
'''11am-3pm''' <font color="#503020">Work
 
'''11am-3pm''' <font color="#503020">Work
−
|'''10am-3pm''' <font color="#503020">Work <br>
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| <font color="#503020">Work <br>
 
|-
 
|-
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|bgcolor="#ffffdd"|'''3:00pm-5:00pm'''
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|bgcolor="#ffffdd"|'''1:00pm-3:00pm'''
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|bgcolor="#ffffaa"|Lunch
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|bgcolor="#ffffaa"|Lunch <br>  [[Barcelona Restaurants|Places to Eat]]
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|bgcolor="#ffffaa"|Lunch
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|bgcolor="#ffffaa"|Lunch<br>  [[Barcelona Restaurants|Places to Eat]]
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|bgcolor="#ffffaa"|Lunch
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|bgcolor="#ffffaa"|Lunch<br>  [[Barcelona Restaurants|Places to Eat]]
 
|-
 
|-
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|bgcolor="#ffffdd"|'''5:00-7:00pm'''
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|bgcolor="#ffffdd"|'''4:00-7:00pm'''
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|'''5:00-7pm:''' <font color="#503020"> Work
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|<font color="#503020"> Work
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|'''5:00-7:00pm:''' <font color="#503020">'''Breakout Session:'''</font><br>[[2015_Summer_Project_Week/SoftwareStack| Open Software Stack]]  (Steve Pieper)
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|'''5:00-7:00pm:''' <font color="#503020">'''Breakout Session:'''</font><br>[[2015_Summer_Project_Week/SoftwareStack| Open Software Stack]]  (Steve Pieper) <br>4pm-6pm: Registration Desk Open for CARS attendees. Please pick up badges. <br>
−
|'''5:00-6pm:''' <font color="#503020"> Work <br>
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|'''4:00-5:00pm:''' <font color="#503020"> Work <br>
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'''6:00-7pm:''' Report Progress
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'''4:30-6pm:''' Report Progress
 
|-
 
|-
 
|bgcolor="#ffffdd"|'''7:00pm'''
 
|bgcolor="#ffffdd"|'''7:00pm'''
 
|bgcolor="#f0e68b"|
 
|bgcolor="#f0e68b"|
−
|bgcolor="#f0e68b"|Adjourn for the day
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|bgcolor="#f0e68b"|Adjourn for the day <br>  [[Barcelona Restaurants|Places to Eat]]
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|bgcolor="#f0e68b"|Adjourn for the day
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|bgcolor="#f0e68b"|Adjourn for the day <br>  [http://www.barcelona-tourist-guide.com/en/events/sant-joan/feast-sant-joan.html Sant Joan Festival]
−
|bgcolor="#f0e68b"|Adjourn for the day
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|bgcolor="#f0e68b"|'''6:00pm''' Adjourn Project Week and relocate to CARS Opening<br> '''7:30pm''' CARS Welcome Reception 
 
|}
 
|}
 +
 +
*Please note that start, end, and mealtimes have been set to match local schedules in Barcelona.
 +
*Here is a list of [[Barcelona Restaurants | locally recommended places to eat]] in the vicinity of the conference hotel. All participants are responsible for their own meals.
  
 
== '''Background''' ==
 
== '''Background''' ==
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Founded in 2005, the National Alliance for Medical Image Computing (NAMIC), was chartered with building a computational infrastructure to support biomedical research as part of the NIH funded [http://www.ncbcs.org/ NCBC] program. The work of this alliance has resulted in important progress in algorithmic research, an open source medical image computing platform [http://www.slicer.org 3D Slicer], built  using [http://www.vtk.org VTK], [http://www.itk.org ITK], [http://www.cmake.org CMake], and [http://www.cdash.org CDash], and the creation of a community of algorithm researchers, biomedical scientists and software engineers who are committed to open science. This community meets twice a year in an event called Project Week.  
 
Founded in 2005, the National Alliance for Medical Image Computing (NAMIC), was chartered with building a computational infrastructure to support biomedical research as part of the NIH funded [http://www.ncbcs.org/ NCBC] program. The work of this alliance has resulted in important progress in algorithmic research, an open source medical image computing platform [http://www.slicer.org 3D Slicer], built  using [http://www.vtk.org VTK], [http://www.itk.org ITK], [http://www.cmake.org CMake], and [http://www.cdash.org CDash], and the creation of a community of algorithm researchers, biomedical scientists and software engineers who are committed to open science. This community meets twice a year in an event called Project Week.  
  
−
[[Engineering:Programming_Events|Project Week]] is a semi-annual event which draws 80-120 researchers. As of August 2014, it is a MICCAI endorsed event. The participants work collaboratively on open-science solutions for problems that lie on the interfaces of the fields of computer science, mechanical engineering, biomedical engineering, and medicine. In contrast to conventional conferences and workshops the primary focus of the Project Weeks is to make progress in projects (as opposed to reporting about progress). The objective of the Project Weeks is to provide a venue for this community of medical open source software creators. Project Weeks are open to all, are publicly advertised, and are funded through fees paid by the attendees. Participants are encouraged to stay for the entire event.  
+
[[Engineering:Programming_Events|Project Week]] is a semi-annual event which draws researchers from around the world. As of August 2014, it is a MICCAI endorsed event. The participants work collaboratively on open-science solutions for problems that lie on the interfaces of the fields of computer science, mechanical engineering, biomedical engineering, and medicine. In contrast to conventional conferences and workshops the primary focus of the Project Weeks is to make progress in projects (as opposed to reporting about progress). The objective of the Project Weeks is to provide a venue for this community of medical open source software creators. Project Weeks are open to all, are publicly advertised, and are funded through fees paid by the attendees. Participants are encouraged to stay for the entire event.  
  
 
Project Week activities: Everyone shows up with a project. Some people are working on the platform. Some people are developing algorithms. Some people are applying the tools to their research problems. We begin the week by introducing projects and connecting teams. We end the week by reporting progress. In addition to the ongoing working sessions, breakout sessions are organized ad-hoc on a variety of special topics. These topics include: discussions of software architecture, presentations of new features and approaches and topics such as Image-Guided Therapy.
 
Project Week activities: Everyone shows up with a project. Some people are working on the platform. Some people are developing algorithms. Some people are applying the tools to their research problems. We begin the week by introducing projects and connecting teams. We end the week by reporting progress. In addition to the ongoing working sessions, breakout sessions are organized ad-hoc on a variety of special topics. These topics include: discussions of software architecture, presentations of new features and approaches and topics such as Image-Guided Therapy.
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Several funded projects use the Project Week as a place to convene and collaborate. These include [http://nac.spl.harvard.edu/ NAC], [http://www.ncigt.org/ NCIGT], [http://qiicr.org/ QIICR], [http://ocairo.technainstitute.com/open-source-software-platforms-and-databases-for-the-adaptive-process/ OCAIRO], and [https://www.ncigt.org/IGTWiki/index.php/Projects/IGTWeb:R25 NCI Funded Image-Guided Fellowship Program].  
 
Several funded projects use the Project Week as a place to convene and collaborate. These include [http://nac.spl.harvard.edu/ NAC], [http://www.ncigt.org/ NCIGT], [http://qiicr.org/ QIICR], [http://ocairo.technainstitute.com/open-source-software-platforms-and-databases-for-the-adaptive-process/ OCAIRO], and [https://www.ncigt.org/IGTWiki/index.php/Projects/IGTWeb:R25 NCI Funded Image-Guided Fellowship Program].  
  
−
A summary of all previous Project Events is available [[Project_Events#Past|here]].
+
This project week is an event [[Post-NCBC-2014|endorsed]] by the MICCAI society.
  
−
This project week is an event [[Post-NCBC-2014|endorsed]] by the MICCAI society.
+
The 21st Project Week is being held on conjunction with the [http://www.cars-int.org/ CARS conference].
  
 
Please make sure that you are on the [http://public.kitware.com/mailman/listinfo/na-mic-project-week na-mic-project-week mailing list]
 
Please make sure that you are on the [http://public.kitware.com/mailman/listinfo/na-mic-project-week na-mic-project-week mailing list]
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* [[2015_Summer_Project_Week_Template | Template for project pages]]
 
* [[2015_Summer_Project_Week_Template | Template for project pages]]
  
−
==Image-Guided Therapy==
 
−
*[[2015 Orthognatic Surgery|Orthognatic Surgery]]
 
  
−
==Chronic Obstructive Pulmonary Disease, Lung, Chest ==
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==Equipment==
−
*[[2015_Summer_Project_Week:LungCAD| LungCAD]] (Jayender Jagadeesan)
 
  
−
==[http://qiicr.org QIICR]==
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*[[2015_Summer_Project_Week:Equipment|Specialized equipment people are going to bring]] (Please add to this list if you are bringing anything)
−
*[[2015_Summer_Project_Week:DCMTK| Integration and testing of new DCMTK with Slicer]] (Michael Onken, Andrey Fedorov)
 
  
−
==Quantitative Radiology==
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==Image-Guided Therapy==
−
*[[2015_Summer_Project_Week:QuantitativeProstate | Texture Analysis for Prostate Imaging]]
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*[[2015_Summer_Project_Week:SlicerIGT|SlicerIGT tutorials for use cases]] (Tamas, Andras, Jay, Steve, Alvaro, Javier, Adam, Caroline, Noby, Tina)
 +
*[http://www.na-mic.org/Wiki/index.php/2015_Refinement_Registration_Module Refinement of RegistrationModule] (Peter Behringer, Andrey Fedorov)
 +
*[[2015_Summer_Project_Week:IGTSliceletBase| Create base classes for IGT slicelet]] (Andras Lasso, Andrey Fedorov, Adam Rankin)
 +
*[http://www.na-mic.org/Wiki/index.php/2015_BRAINSFit_registration_in_SimpleITK BRAINSFit registration in SimpleITK] (Peter Behringer, Andrey Fedorov, Dženan Zukić)
 +
*[http://www.na-mic.org/Wiki/index.php/2015_Multi_atlas_based_prostate_segmentation Multi atlas based prostate segmentation] (Paolo Zaffino, Giampaolo Pileggi, Salvatore Scaramuzzino, Peter Behringer, Andrey Fedorov, Maria Francesca Spadea)
 +
*[http://www.na-mic.org/Wiki/index.php/2015_Multimodal_Guidance_for_Breast_Cancer_Surgery Multimodal Guidance for Breast Cancer Surgery] (Mikael Brudfors, David García, Javier Pascau)
 +
*[[2015_pilot trajectory planning  | Pilot Trajectory Planning(Caroline Essert, Sonia Pujol)]]
 +
*[[2015_Summer_Project_Week:LinearFeatureRegistration|Linear Feature Registration]] (Matthew Holden)
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*[[2015_Summer_Project_Week:LightWeightRobotIGT | Integration of a KUKA robot using OpenIGTLink ]]  (Sebastian Tauscher, Junichi Tokuda)
 +
*[[2015_Summer_Project_Week:USReconstruction | Gated 3D Ultrasound Reconstructions with the Help of a Single-Element US Transducer ]] (Frank Preiswerk, Laurent Chauvin)
 +
*[[2015 Orthognathic Surgery|Orthognathic Surgery]] (Dženan Zukić, Kitware)
 +
*[[2015_Summer_Project_Week:SlicerTAVI | SlicerTAVI ]] (Adam Rankin)
 +
*[http://www.na-mic.org/Wiki/index.php/2015_pyDBS pyDBS module update to Slicer4.4 (Sara Fernandez-Vidal, Yulong Zhao, Sonia Pujol)]
 +
*[[2015_Summer_Project_Week:OpenSource_MRTRUS_Fusion_for_Prostate_biopsy|Open-source MRI-TRUS Fusion for Prostate biopsy]] (Andrey Fedorov, Andras Lasso, Clare Tempany)
 +
*[[2015_Summer_Project_Week:TrackerlessMRIUSFusion | Trackerless MRI - US Registration ]] (Utsav Pardasani)
 +
*[[2015_Summer_Project_Week:SordinaLinacPath | Sordina LINAC Guidance ]] (Eugenio Marinetto)
 +
*[[2015_Summer_Project_Week:USRecon | US Reconstruction ]] (Steve Pieper, Tamas Ungi,Mikael Brudfors)
  
−
==Feature Extraction==
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==Feature Based Image Analysis==
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*[[2015_Summer_Project_Week:BigDataFeatures | Big Data Medical Image Analysis using Local Features]] (Matthew Toews, William Wells)
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*[[2015_Summer_Project_Week:LungCAD| LungCAD]] (Jayender Jagadeesan, Tobias Penzkofer, Sandy Wells, Clara Meinzer, Raúl San José Estepar, Jorge Onieva)
 +
*[[2015_Summer_Project_Week:QuantitativeProstate | Texture Analysis for Prostate Imaging]] (Tobias Penzkofer, Jay Jagadeesan, Matthew Toews, Tina Kapur)
 +
*[[2015_Summer_Project_Week:BigDataFeatures | Big Data Medical Image Analysis using Local Features]] (Matthew Toews, William Wells, Raul San Jose Estepar, Tina Kapur)
 +
*[[2015_Summer_Project_Week:AutomaticCephalometric | Automatic Cephalometric Analysis ]] (J. Jesus Montufar, Marcelo Romero)
  
−
==Additional Brain Image Analysis==
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==Chest Imaging Platform==
−
*[http://www.na-mic.org/Wiki/index.php/2015_pyDBS pyDBS module update to Slicer4.4 (Sara Fernandez-Vidal, Yulong Zhao, Sonia Pujol)]
+
*[[2015_Summer_Project_Week:Slicer_CIP | Slicer CIP: advanced features and deployment ]]  (Raúl San José, Alex Yarmarkovich, Jorge Onieva)
 +
*[[2015_Summer_Project_Week:PAA_Ratio | PAA Ratio Module ]]  (Jorge Onieva,Raúl San José)
 +
*[[2015_Summer_Project_Week:Tracheal_Stent_Planning | Planning for tracheal stents ]]  (Raúl San José, Jorge Onieva, George Cheng)
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*[[2015_Summer_Project_Week:Atelectasis_Quantification | Volumetric Quantification of Atelectasis ]]  (Ángel Torrado-Carvajal, Carolina Romero, Norberto Malpica)
  
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==Infrastructure==
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==QIICR==
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*[[2015_Summer_Project_Week:Update Checker | Update Checker]]
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*[[2015_Summer_Project_Week:DSC | Dynamic Susceptibility Contrast (DSC) MRI for brain ]] (Xiao Da, Yangming Ou, Andriy Fedorov, Steve Pieper, Jayashree Kalpathy-Cramer)
−
*[[2015_Summer_Project_Week:Integrated Virtual Reality Viewer | Integrated Virtual Reality Viewer]]
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*[[2015_Summer_Project_Week:T1 mapping | T1 mapping for Dynamic Contrast Enhanced (DCE) MRI ]] (Xiao Da, Yangming Ou, Andriy Fedorov, Jayashree Kalpathy-Cramer)
−
 
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*[[2015_Summer_Project_Week:DCMTK| Integration and testing of new DCMTK with Slicer]] (Michael Onken, Andrey Fedorov, Steve Pieper)
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==Astronomy==
 
−
*[[2015_Summer_Project_Week:Astronomy | visualization of HI in galaxies]] (Davide Punzo)
 
  
 
==Infrastructure==
 
==Infrastructure==
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*[[2015_Summer_Project_Week:CLIModules_Backgrounding_in_MeVisLab | Running CLI Modules in the background in MeVisLab]] (Hans Meine)
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*[[2015_Summer_Project_Week:Return_Fiducials_from_CLIs | Return fiducials from CLIs]] (Nicole Aucoin,Hans Meine)
−
*[[2015_Summer_Project_Week:CLIModules_Indexing | CLI Modules elasticsearch / kibana dashboard]] (Hans Meine, JC)
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*[[2015_Summer_Project_Week:Integrated Virtual Reality Viewer | Integrated Virtual Reality Viewer]] (Franklin King, Utsav Pardasani)
−
*[[2015_Summer_Project_Week:CTK_Interative_Plugins | CTK plugins / paths towards interoperability with GUI & interaction]] (Hans Meine, ??)
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*[[2015_Summer_Project_Week:SegmentationNode| Use new Segmentation node in Editor]] (Andras Lasso, Steve Pieper)
−
*[[2015_Summer_Project_Week:BRAINSFit_in_MeVisLab | Interoperability tests with "interesting" CLI modules (BRAINSFit, CIP, UKFTractography?) in MeVisLab (/Frontier)]] (Hans Meine, Steve Pieper)
+
*[[2015_Summer_Project_Week:Slicer_Conda | Integrate Conda Python in Slicer]] (Jorge Onieva, Raúl San José, Utsav Pardasani, Steve Pieper)
−
*[[2015_Summer_Project_Week:Return_Fiducials_from_CLIs | Return fiducials from CLIs]] (Nicole Aucoin, Jim Miller)
 
−
*[[2015_Summer_Project_Week:Python_scripts_from_command_line|Simplify use of python scripts from the command line]] (Andrey Fedorov, Steve Pieper, Robin Weiss, Artem Mamonov)
 
  
 +
==Web==
 +
*[[2015_Summer_Project_Week:Dicom parsing with DCMJS | Dicom parsing with DCMJS]] (Nicolas Rannou, Yves Martelli, Michael Onken, Steve Pieper)
 +
*[[2015_Summer_Project_Week:Volume rendering with DCMJS and THREEJS | Volume Rendering with DCMJS and THREEJS]] (Nicolas Rannou, Steve Pieper)
 +
*[[2015_Summer_Project_Week:CTK for the web and touch devices| CTK for the web and touch devices]] (Nicolas Rannou, Yves Martelli, Steve Pieper)
 +
*[[2015_Summer_Project_Week:SlicerCardboard| Slicer for mobile-based vr goggles]] (Utsav Pardasani, Adam Rankin)
 +
*[[2015_Summer_Project_Week:PythonDevelopmentTutorial | Python developer tutorial]] (Adam Rankin)
  
 +
==Astronomy==
 +
*[[2015_Summer_Project_Week:Astronomy | Visualization of HI in galaxies]] (Davide Punzo)
  
−
== '''Registrants''' ==
+
== Registrants==
  
 
Please add your name to the list.  This is the registration mechanism for this project week.
 
Please add your name to the list.  This is the registration mechanism for this project week.
−
#Tina Kapur, BWH
+
# Nicole Aucoin :: Brigham and Women's Hospital
−
#Ron Kikinis, BWH & Fraunhofer
+
# Peter Behringer :: Brigham and Women's Hospital
−
#Steve Pieper, Isomics
+
# Mikael Brudfors :: Charles III University of Madrid
−
#Tamas Ungi, Queen's University, Canada
+
# Laurent Chauvin :: Brigham and Women's Hospital
−
#Andras Lasso, Queen's University, Canada
+
# Xiao Da :: Massachusetts General Hospital
−
#Paolo Zaffino, ImagEngLab, Magna Graecia University, Italy
+
# Arnaud de Bruecker :: Ecole supérieure d'informatique
−
#Salvatore Scaramuzzino, ImagEngLab, Magna Graecia University, Italy
+
# Caroline Essert :: University of Strasbourg
−
#Giampaolo Pileggi, ImagEngLab, Magna Graecia University, Italy
+
# Andriy Fedorov :: Brigham and Women's Hospital
−
#Hans Meine, Fraunhofer MEVIS, Bremen, Germany
+
# Sara Fernandez Vidal :: ICM
−
#Nicole Aucoin, BWH
+
# David García :: Charles III University of Madrid
−
#Sonia Pujol, BWH
+
# Jorge García :: Technical University of Madrid
−
#Dženan Zukić, Kitware, Carrboro, NC
+
# Guido Gerig :: University of Utah
−
#Jayender Jagadeesan, BWH
+
# Alvaro Gomez :: University of the Republic of Uruguay
−
#Guido Gerig, Utah
+
# Ali Gottschal :: Ecole supérieure d'informatique
−
#Sandy Wells, BWH
+
# Nobuhiko Hata :: Brigham and Women's Hospital
−
#Matthew Toews, École de Technologie Supérieure, Montreal, Canada
+
# Alfredo Higueras :: Galgo Medical
−
#Frank Preiswerk, BWH
+
# Matthew Holden :: Queen's University
−
#Junichi Tokuda, BWH
+
# Jayender Jagadeesan :: Brigham and Women's Hospital
−
#Jonathan Scalera, BWH
+
# Laszlo Kanyasi :: Queen's University
−
#Raul San Jose, BWH
+
# Tina Kapur :: Brigham and Women's Hospital
−
#Jorge Onieva, BWH
+
# Ron Kikinis :: Brigham and Women's Hospital
−
#James Ross, BWH
+
# Franklin King :: Queen's University
−
#Yulong Zhao, Université de Rennes
+
# Andras Lasso :: Queen's University
−
#Laurent Chauvin, BWH
+
# Eugenio Marinetto :: Charles III University of Madrid
−
#Michael Onken, Open Connections
+
# Yves Martelli :: Galgo Medical
−
#Tobias Penzkofer, Department of Radiology, Charité Berlin, Germany
+
# Clara Meinzer :: Semmelweis University
−
#Javier Pascau, Universidad Carlos III de Madrid, Spain
+
# J. Jesus Montufar :: Universidad Autonoma del Estado de Mexico
−
#Angel Torrado-Carvajal, Universidad Rey Juan Carlos, Madrid, Spain
+
# Jorge Onieva :: Brigham and Women's Hospital
−
#Nobuhiko Hata, BWH
+
# Michael Onken :: Open Connections
−
#Robert H. Owen, BK Medical ApS, Denmark
+
# Robert H. Owen :: BK Medical ApS
−
#Clare Tempany, BWH
+
# Utsav Pardasani :: Robarts Research Institute
−
#Adam Rankin, Robarts
+
# Javier Pascau :: Charles III University of Madrid
−
#Utsav Pardasani, Robarts
+
# Tobias Penzkofer :: Charité Berlin Germany
−
#Marcelo Romero, Facultad de Ingenieria, Universidad Autonoma del Estado de Mexico, Mexico
+
# Steve Pieper :: Isomics, Inc.
−
#J. Jesus Montufar, Facultad de Ingenieria, Universidad Autonoma del Estado de Mexico, Mexico
+
# Giampaolo Pileggi :: Magna Graecia University
−
#Davide Punzo, Kapteyn Astronomical Institute, University of Groningen, Netherlands
+
# Frank Preiswerk :: Brigham and Women's Hospital
−
#Andrey Fedorov, BWH
+
# Sonia Pujol :: Brigham and Women's Hospital
−
#Nicolas Rannou, BCH
+
# Davide Punzo :: University of Groningen
−
#Mikael Brudfors, Universidad Carlos III de Madrid, Spain
+
# Adam Rankin :: Robarts Research Institute
−
#Laura Sanz, Universidad Carlos III de Madrid, Spain
+
# Nicolas Rannou :: Boston Children's Hospital
−
#Eugenio Marinetto, Universidad Carlos III de Madrid, Spain
+
# Marcelo Romero :: Universidad Autonoma del Estado de Mexico
−
#David García, Universidad Carlos III de Madrid, Spain
+
# Raul San Jose Estepar :: Brigham and Women's Hospital
−
#Franklin King, Queen's University / BWH
+
# Laura Sanz :: Charles III University of Madrid
−
#Jorge García, Universidad Politécnica de Madrid, Spain
+
# Salvatore Scaramuzzino :: Magna Graecia University
−
#Peter Behringer, BWH
+
# Tsotne Shonia :: Ecole supérieure d'informatique
−
#Caroline Essert, University of Strasbourg
+
# Sebastian Tauscher :: Leibniz Universität Hannover
 +
# Christophe Teixeira Pereira :: Ecole supérieure d'informatique
 +
# Clare Tempany :: Brigham and Women's Hospital
 +
# Matthew Toews :: Ecole de Technologie Superieure
 +
# Angel Torrado-Carvajal :: King Juan Carlos University
 +
# Tamas Ungi :: Queen's University
 +
# Sandy Wells :: Brigham and Women's Hospital
 +
# Paolo Zaffino :: Magna Græcia University of Catanzaro
 +
# Yulong Zhao :: University of Rennes
 +
# Dženan Zukić :: Kitware, Inc.

Latest revision as of 15:50, 30 March 2017

Home < 2015 Summer Project Week

Back to Events

A summary of all past Project Events.

PW-Summer2015.png

Welcome to the web page for the 21st Project Week!

Summary

The 21st PROJECT EVENT was held on June 21-24, 2015 in Barcelona, Spain, in conjunction with the CARS conference (http://www.cars-int.org/). It recorded 55 registered attendees, who worked on 39 projects. These attendees represented 20 academic sites (Boston Children’s Hospital, Brigham and Women’s Hospital, Charité University Hospital Berlin (Germany), École de Technologie Supérieure, (Canada), École supérieure d'informatique (Belgium), Fraunhofer (Germany), Leibniz University, Hannover (Germany), Magna Graecia University (Italy),Massachusetts General Hospital, Queen’s University (Canada), Robarts Research Institute (Canada), Semmelweis Medical University (Hungary), Universidad Autonoma del Estado de Mexico, Universidad Carlos III de Madrid, University of Groningen (Netherlands), Universidad de la Republica (Uruguay), Universidad Rey Juan Carlos (Madrid), Universidad Politécnica de Madrid, University of Strasbourg (France), University of Utah, and 7 companies (Kitware, Isomics Inc,Open Connections, Galgo Medical, BK Medical ApS, ICM, Perk Lab).

Logistics

  • Dates: June 21-24, 2015.
  • Location: NH Collection Constanza Hotel, Barcelona, Spain
  • REGISTRATION: Please register by adding your name to the list at the end of this page
  • Registration Fee: None. The organizers will cover the charge for the conference room, while all attendees are responsible for their own hotel rooms as well as food.
  • Hotel: You are welcome to book a room using the CARS 2015 conference services (Click here for form)
  • To attend the CARS meeting, please visit http://www.cars-int.org/
  • Premium Network at Berlin Room:
    • username: EVENT/CARS2015
    • Password=CARS
  • Please get a badge for CARS, even if you did not register for the CARS conference. Otherwise you will not be able to come in tomorrow.

Agenda

Time Sunday, June 21 Monday, June 22
Room Berlin 		Tuesday, June 23
Room Berlin 		Wednesday, June 24
Room Berlin
9:00am-3:00pm:
6pm Meeting with All Participants in Hotel Constanza Lobby 		10:00-11am: Rapid Introduction of all Projects and Teams

11am-3pm Work

10:00am-11am: Breakout Session: -
Ask expert physicians (Ron Kikinis, Clare Tempany)
11am-3pm Work

Work
1:00pm-3:00pm Lunch
Places to Eat 		Lunch
Places to Eat 		Lunch
Places to Eat
4:00-7:00pm Work 5:00-7:00pm: Breakout Session:
Open Software Stack (Steve Pieper)
4pm-6pm: Registration Desk Open for CARS attendees. Please pick up badges.
4:00-5:00pm: Work

4:30-6pm: Report Progress

7:00pm Adjourn for the day
Places to Eat 		Adjourn for the day
Sant Joan Festival 		6:00pm Adjourn Project Week and relocate to CARS Opening
7:30pm CARS Welcome Reception
  • Please note that start, end, and mealtimes have been set to match local schedules in Barcelona.
  • Here is a list of locally recommended places to eat in the vicinity of the conference hotel. All participants are responsible for their own meals.

Background

Founded in 2005, the National Alliance for Medical Image Computing (NAMIC), was chartered with building a computational infrastructure to support biomedical research as part of the NIH funded NCBC program. The work of this alliance has resulted in important progress in algorithmic research, an open source medical image computing platform 3D Slicer, built using VTK, ITK, CMake, and CDash, and the creation of a community of algorithm researchers, biomedical scientists and software engineers who are committed to open science. This community meets twice a year in an event called Project Week.

Project Week is a semi-annual event which draws researchers from around the world. As of August 2014, it is a MICCAI endorsed event. The participants work collaboratively on open-science solutions for problems that lie on the interfaces of the fields of computer science, mechanical engineering, biomedical engineering, and medicine. In contrast to conventional conferences and workshops the primary focus of the Project Weeks is to make progress in projects (as opposed to reporting about progress). The objective of the Project Weeks is to provide a venue for this community of medical open source software creators. Project Weeks are open to all, are publicly advertised, and are funded through fees paid by the attendees. Participants are encouraged to stay for the entire event.

Project Week activities: Everyone shows up with a project. Some people are working on the platform. Some people are developing algorithms. Some people are applying the tools to their research problems. We begin the week by introducing projects and connecting teams. We end the week by reporting progress. In addition to the ongoing working sessions, breakout sessions are organized ad-hoc on a variety of special topics. These topics include: discussions of software architecture, presentations of new features and approaches and topics such as Image-Guided Therapy.

Several funded projects use the Project Week as a place to convene and collaborate. These include NAC, NCIGT, QIICR, OCAIRO, and NCI Funded Image-Guided Fellowship Program.

This project week is an event endorsed by the MICCAI society.

The 21st Project Week is being held on conjunction with the CARS conference.

Please make sure that you are on the na-mic-project-week mailing list

Projects


Equipment

Image-Guided Therapy

Feature Based Image Analysis

Chest Imaging Platform

QIICR

Infrastructure

Web

Astronomy

Registrants

Please add your name to the list. This is the registration mechanism for this project week.

  1. Nicole Aucoin :: Brigham and Women's Hospital
  2. Peter Behringer :: Brigham and Women's Hospital
  3. Mikael Brudfors :: Charles III University of Madrid
  4. Laurent Chauvin :: Brigham and Women's Hospital
  5. Xiao Da :: Massachusetts General Hospital
  6. Arnaud de Bruecker :: Ecole supérieure d'informatique
  7. Caroline Essert :: University of Strasbourg
  8. Andriy Fedorov :: Brigham and Women's Hospital
  9. Sara Fernandez Vidal :: ICM
  10. David García :: Charles III University of Madrid
  11. Jorge García :: Technical University of Madrid
  12. Guido Gerig :: University of Utah
  13. Alvaro Gomez :: University of the Republic of Uruguay
  14. Ali Gottschal :: Ecole supérieure d'informatique
  15. Nobuhiko Hata :: Brigham and Women's Hospital
  16. Alfredo Higueras :: Galgo Medical
  17. Matthew Holden :: Queen's University
  18. Jayender Jagadeesan :: Brigham and Women's Hospital
  19. Laszlo Kanyasi :: Queen's University
  20. Tina Kapur :: Brigham and Women's Hospital
  21. Ron Kikinis :: Brigham and Women's Hospital
  22. Franklin King :: Queen's University
  23. Andras Lasso :: Queen's University
  24. Eugenio Marinetto :: Charles III University of Madrid
  25. Yves Martelli :: Galgo Medical
  26. Clara Meinzer :: Semmelweis University
  27. J. Jesus Montufar :: Universidad Autonoma del Estado de Mexico
  28. Jorge Onieva :: Brigham and Women's Hospital
  29. Michael Onken :: Open Connections
  30. Robert H. Owen :: BK Medical ApS
  31. Utsav Pardasani :: Robarts Research Institute
  32. Javier Pascau :: Charles III University of Madrid
  33. Tobias Penzkofer :: Charité Berlin Germany
  34. Steve Pieper :: Isomics, Inc.
  35. Giampaolo Pileggi :: Magna Graecia University
  36. Frank Preiswerk :: Brigham and Women's Hospital
  37. Sonia Pujol :: Brigham and Women's Hospital
  38. Davide Punzo :: University of Groningen
  39. Adam Rankin :: Robarts Research Institute
  40. Nicolas Rannou :: Boston Children's Hospital
  41. Marcelo Romero :: Universidad Autonoma del Estado de Mexico
  42. Raul San Jose Estepar :: Brigham and Women's Hospital
  43. Laura Sanz :: Charles III University of Madrid
  44. Salvatore Scaramuzzino :: Magna Graecia University
  45. Tsotne Shonia :: Ecole supérieure d'informatique
  46. Sebastian Tauscher :: Leibniz Universität Hannover
  47. Christophe Teixeira Pereira :: Ecole supérieure d'informatique
  48. Clare Tempany :: Brigham and Women's Hospital
  49. Matthew Toews :: Ecole de Technologie Superieure
  50. Angel Torrado-Carvajal :: King Juan Carlos University
  51. Tamas Ungi :: Queen's University
  52. Sandy Wells :: Brigham and Women's Hospital
  53. Paolo Zaffino :: Magna Græcia University of Catanzaro
  54. Yulong Zhao :: University of Rennes
  55. Dženan Zukić :: Kitware, Inc.
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