Difference between revisions of "IGT:ToolKit/Navigation-tutorial"

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To use precomplied Open IGT Link module below, one has to download Slicer3.2-rc2-2008-06-23 .
 
To use precomplied Open IGT Link module below, one has to download Slicer3.2-rc2-2008-06-23 .
  
=== 3D Slicer (Version 3.2 RC2 -- released on June 23, 2008)===
 
 
* [http://www.slicer.org/DownloadSlicer.php/Snapshots/win32/Slicer3-3.2-rc2-2008-06-23-win32.exe For Windows (32-bit)]
 
* [http://www.slicer.org/DownloadSlicer.php/Snapshots/win32/Slicer3-3.2-rc2-2008-06-23-win32.exe For Windows (32-bit)]
 
* [http://www.slicer.org/DownloadSlicer.php/Snapshots/linux-x86/Slicer3-3.2-rc2-2008-06-23-linux-x86.tar.gz For Linux (x86, 32-bit)]
 
* [http://www.slicer.org/DownloadSlicer.php/Snapshots/linux-x86/Slicer3-3.2-rc2-2008-06-23-linux-x86.tar.gz For Linux (x86, 32-bit)]
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* [http://www.slicer.org/DownloadSlicer.php/Snapshots/darwin-ppc/Slicer3-3.2-rc2-2008-06-23-darwin-ppc.tar.gz For Mac OS X (PPC)]
 
* [http://www.slicer.org/DownloadSlicer.php/Snapshots/darwin-ppc/Slicer3-3.2-rc2-2008-06-23-darwin-ppc.tar.gz For Mac OS X (PPC)]
  
=== Open IGT Link Loadable Module (for Version 3.2 RC2 -- released on June 23, 2008)===
 
* [[Media:OpenIGTLink_3.2rc2_Linux_x86_32.tgz| For Linux (x86, 32-bit)]].
 
* [[Media:OpenIGTLink_3.2rc2_Linux_x86_64.tgz| For Linux (x86, 64-bit)]].
 
* [[Media:OpenIGTLink_3.2rc2_Win_x86_32.zip| For Windows (32-bit)]].
 
* [[Media:OpenIGTLink_3.2rc2_Darwin_x86.tgz| For Mac OS X(x86)]].
 
* [[Media:OpenIGTLink_3.2rc2_Darwin_ppc.tgz| For Mac OS X(PPC)]].
 
 
=== 3D Slicer (Version 3.2 RC2 -- released on June 23, 2008)===
 
* [http://www.slicer.org/DownloadSlicer.php/Snapshots/win32/Slicer3-3.2-rc2-2008-06-23-win32.exe For Windows (32-bit)]
 
* [http://www.slicer.org/DownloadSlicer.php/Snapshots/linux-x86/Slicer3-3.2-rc2-2008-06-23-linux-x86.tar.gz For Linux (x86, 32-bit)]
 
* [http://www.slicer.org/DownloadSlicer.php/Snapshots/linux-x86_64/Slicer3-3.2-rc2-2008-06-23-linux-x86_64.tar.gz For Linux (x86, 64-bit)]
 
* [http://www.slicer.org/DownloadSlicer.php/Snapshots/darwin-x86/Slicer3-3.2-rc2-2008-06-23-darwin-x86.tar.gz For Mac OS X (x86)]
 
* [http://www.slicer.org/DownloadSlicer.php/Snapshots/darwin-ppc/Slicer3-3.2-rc2-2008-06-23-darwin-ppc.tar.gz For Mac OS X (PPC)]
 
 
=== Open IGT Link Loadable Module (for Version 3.2 RC2 -- released on June 23, 2008)===
 
* [[Media:OpenIGTLink_3.2rc2_Linux_x86_32.tgz| For Linux (x86, 32-bit)]].
 
* [[Media:OpenIGTLink_3.2rc2_Linux_x86_64.tgz| For Linux (x86, 64-bit)]].
 
* [[Media:OpenIGTLink_3.2rc2_Win_x86_32.zip| For Windows (32-bit)]].
 
* [[Media:OpenIGTLink_3.2rc2_Darwin_x86.tgz| For Mac OS X(x86)]].
 
* [[Media:OpenIGTLink_3.2rc2_Darwin_ppc.tgz| For Mac OS X(PPC)]].
 
  
 
=== '''Step 2: Install the OpenIGTLink module''' ===
 
=== '''Step 2: Install the OpenIGTLink module''' ===
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* '''Step 2a:'''  You have the choice of either downloading a precompiled version (binary) '''OR''' building it yourself from the source code:
 
* '''Step 2a:'''  You have the choice of either downloading a precompiled version (binary) '''OR''' building it yourself from the source code:
 
** Precompiled OpenIGTLink module (for use with Slicer 3.2):  Download and unzip.
 
** Precompiled OpenIGTLink module (for use with Slicer 3.2):  Download and unzip.
 +
*** [[Media:OpenIGTLink_3.2rc2_Linux_x86_32.tgz| For Linux (x86, 32-bit)]].
 +
*** [[Media:OpenIGTLink_3.2rc2_Linux_x86_64.tgz| For Linux (x86, 64-bit)]].
 +
*** [[Media:OpenIGTLink_3.2rc2_Win_x86_32.zip| For Windows (32-bit)]].
 +
*** [[Media:OpenIGTLink_3.2rc2_Darwin_x86.tgz| For Mac OS X(x86)]].
 +
*** [[Media:OpenIGTLink_3.2rc2_Darwin_ppc.tgz| For Mac OS X(PPC)]].
 +
 +
<!--
 
*** [[Media:OpenIGTLink_3.2_Win_x86_32.zip| For Windows (32-bit)]].
 
*** [[Media:OpenIGTLink_3.2_Win_x86_32.zip| For Windows (32-bit)]].
 
*** [[Media:OpenIGTLink-vs8-Munich2008.zip| For Windows (32-bit Visual Studio 2008, debug, Munich2008)]]
 
*** [[Media:OpenIGTLink-vs8-Munich2008.zip| For Windows (32-bit Visual Studio 2008, debug, Munich2008)]]
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*** [[Media:OpenIGTLink_3.2_Linux_x86_32.tgz| For Linux (x86, 32-bit)]].
 
*** [[Media:OpenIGTLink_3.2_Linux_x86_32.tgz| For Linux (x86, 32-bit)]].
 
*** [[Media:OpenIGTLink_3.2_Linux_x86_64.tgz| For Linux (x86, 64-bit)]].
 
*** [[Media:OpenIGTLink_3.2_Linux_x86_64.tgz| For Linux (x86, 64-bit)]].
 +
-->
 +
 
** Building the OpenIGTLink module from source code:  [http://wiki.na-mic.org/Wiki/index.php/IGT:ToolKit/Build-OpenIGTLink Find the instructions here]
 
** Building the OpenIGTLink module from source code:  [http://wiki.na-mic.org/Wiki/index.php/IGT:ToolKit/Build-OpenIGTLink Find the instructions here]
 
* ''' Step 2b:'''
 
* ''' Step 2b:'''

Revision as of 13:06, 15 October 2008

Home < IGT:ToolKit < Navigation-tutorial
IGTBasicNavigationSummary.png

Back to IGT:ToolKit

Basic Slicer3 Navigation Tutorial

Overview:

This tutorial uses a tracking simulator to explain how navigation works in Slicer3.

The general IGT navigation system consists of the following components:

  • Slicer3 - the base platform
  • OpenIGTLink module - a loadable software module plugged into Slicer3
  • IGSTK - an interfacing tool for common commercial tracking devices
  • A tracking device - such as the NDI Aurora magnetic tracking system

The tracking simulator simulates the tracking device and the IGSTK interfacing software.

Those wishing to connect a real tracking system to Slicer3 should see the Advanced Navigation Tutorial.

Tutorial Materials

  • Tutorial slides for the Basic Navigation Tutorial
  • Atlas: download the .zip file from either the SPL-PNL Brain Atlas or the SPL Abdominal Atlas
  • Tool model (right-click to download)
    • If Windows saves the file as Tool.htm intstead of Tool.vtk: Select Start->Run, type "cmd", type "cd <directory where Tool.htm is>", type "move Tool.htm Tool.vtk"

Software Installation Instructions

Step 1: Install Slicer3

Go to the Slicer3 Install site.

To use precomplied Open IGT Link module below, one has to download Slicer3.2-rc1-2008-06-02 .

To use precomplied Open IGT Link module below, one has to download Slicer3.2-rc2-2008-06-23 .


Step 2: Install the OpenIGTLink module

OpenIGTLink is a communication protocol used to interface Slicer3 with external devices, such as trackers, imaging devices and robots. OpenIGTLink is currently distributed as a loadable module for Slicer3.


  • Step 2b:
    • Windows: Copy the binary into your-slicer3-build(install)-directory/lib/Slicer3/Modules/Debug
    • Linux/Mac OS X: Copy the binary into your-slicer3-build(install)-directory/lib/Slicer3/Modules.
  • You should see the OpenIGTLink module in the Slicer3 module list once Slicer3 is started.

Step 3: Install the tracker simulator

The tracking simulator will be used to generate and send fake tracking data to Slicer3.

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