Difference between revisions of "DBP:Harvard:Software:Minutes:10"

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==== DTI Meeting Minutes | October 11, 2006 ====
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''Agenda for 10-12-05 Meeting''
  
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<br /> Present: Doug, Kate, Marc, Sylvain, Jenny, Martha, Gordon, Toshiro, CF, Katharina, Gudrun, Marek
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<br />
  
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<br />'''Review of last week'''
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* Summarize anything from UNC visit?
  
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# Fornix tractography
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<br />
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#* Sylvain spent time with Doug and Kate this week to figure out the 'bad' fornix cases, but they weren't able to remedy the problem cases. Lowering the anisotropy threshold does not help.
 
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#* Sylvain will email case to Gordon so that he can take a closer look
 
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# Cutting tracts
 
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#* Marc wrote a Matlab script to read in tracts (.vtk) and cut along planar labelmap ROIs. Doug will show the output of the script at the next meeting.
 
  
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<br />'''OR function in DTMRI'''
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* Marek: Smoothing issue with uncinate fasciculus/IOFF data?
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** (was this covered last week?)
  
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* Sylvain noted that there is no 'OR' function when selecting tracts in DTMRI (while you can use 'AND' and 'NOT'). He will talk to Raul about adding this option into the module.
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<br />
  
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<br />'''NAMIC Meeting next week'''
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* [[DBP:Harvard:Software:Testing:DTI:Slicer|Software Testing]], DTMRI module
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** Sylvain, able to fix/create NRRD header for caseD20?
  
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* Next tuesday there will be a meeting between Cores 1 and 3. Sylvain and Marc will be demonstrating ongoing work.
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<br />
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* Thanks Raul...
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** Multiple ROI module in Slicer appears to be working (MarkD needs to test with more cases)
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** In slicer_lmi, "Include Zeros" default is set to off (PIs need to specify to RAs if they want to see data with zeros included)
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** Did you say you could eliminate "background noise" in scalars?
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<br />
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* Lauren: Fiber clustering, backtracking to corpus labelmap?

Revision as of 14:01, 18 December 2006

Home < DBP:Harvard:Software:Minutes:10

Agenda for 10-12-05 Meeting


  • Summarize anything from UNC visit?


  • Marek: Smoothing issue with uncinate fasciculus/IOFF data?
    • (was this covered last week?)


  • Software Testing, DTMRI module
    • Sylvain, able to fix/create NRRD header for caseD20?


  • Thanks Raul...
    • Multiple ROI module in Slicer appears to be working (MarkD needs to test with more cases)
    • In slicer_lmi, "Include Zeros" default is set to off (PIs need to specify to RAs if they want to see data with zeros included)
    • Did you say you could eliminate "background noise" in scalars?


  • Lauren: Fiber clustering, backtracking to corpus labelmap?
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