Difference between revisions of "Events:VT-NAMIC-NCBC-Collaboration-meeting-2009"

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**segmentation
 
**segmentation
 
*Review currents results
 
*Review currents results
 +
** Tommy and Louis images appear to have bad quality. Ron recommends not to use these subjects for atlas construction
 +
{|
 +
|<gallery perrow="3" heights="200px" widths="300px">
 +
Image:oscar_snr.jpg|'''Oscar'''
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Image:tommy_snr.jpg|'''Tommy'''
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Image:louis_snr.jpg|'''Louis'''
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</gallery>
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|}
 
* Identify Slicer components of the workflow that are ... working, broken, missing
 
* Identify Slicer components of the workflow that are ... working, broken, missing
  

Revision as of 15:21, 5 October 2009

Home < Events:VT-NAMIC-NCBC-Collaboration-meeting-2009

Logistics

  • Andriy Fedorov and Ginger Li: work on pre-meeting agenda Wed-Thu October 7-8, 2009
  • All participants meeting: Friday, October 9, 2009, 9am-4pm (time is tentative, but room has been reserved, confirmed with Katie Mastrogiacomo)
  • Wednesday and Thursday location: 1249 Boylston Street
  • Friday meeting location: 1249 Boylston Street, 2nd floor conference room

Goals

  • To be completed or partially completed prior to the meeting by Andriy Fedorov and Ginger Li (Oct 7-8):
    • Provide necessary user- and developer-level Slicer training for Ginger
    • Understand the currently used processing workflow
    • Confirm reproducibility of the processing steps between VT and SPL
    • Document the processing steps as precisely as necessary for reproducibility and cross-validation of the results (wiki page)
  • To be completed during the meeting
    • Review and confirm the correctness of the workflow based on the wiki documentation (Chris, Ron and Sandy)
    • Review the available data and current segmentation results
    • Discuss action timeline for the remaining part of the funded project period
      • Potential for segmentation validation using cryo-histology (Chris can show some results of reconstructed 3D cryo-histo volumes)
      • Potential for cortical thickness measures / integration with Caret or freesurfer
    • Discuss publication plans

Agenda

  • Review, discuss and finalize the processing workflow (to be discussed and documented by Andriy Fedorov and Ginger Li prior to the meeting Oct 7-8)
    • atlas construction
    • image pre-processing
    • registration
    • segmentation
  • Review currents results
    • Tommy and Louis images appear to have bad quality. Ron recommends not to use these subjects for atlas construction

  • Oscar

  • Tommy

  • Louis

  • Identify Slicer components of the workflow that are ... working, broken, missing

Schedule

  • 9am (earlier?): Ron, Sandy, Ginger, Andrey meet at Boylston conference room to start discussion
  • 10am: Chris' flight arrives at Logan
  • 1pm: Chris gives a journal club talk at 1249 Boylston conference room
  • 7pm: Chris' flight departs from Logan

Attendance

Open to all interested parties:

  1. Chris Wyatt
  2. Ginger Li
  3. Ron Kikinis
  4. Sandy Wells
  5. Andriy Fedorov

References

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