Publications

The following publications gratefully acknowledge the support of NA-MIC. Please see NA-MIC acknowledgement instructions for instructions on how to acknowledge NA-MIC in your publications.

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Peer Reviewed Journal Papers

1. Nakamura M, McCarley RW, Kubicki M, Dickey CC, Niznikiewicz MA, Voglmaier MM, Seidman LJ, Maier SE, Westin CF, Kikinis R, Shenton ME. Fronto-temporal disconnectivity in schizotypal personality disorder: a diffusion tensor imaging study. Biol Psychiatry. 2005 Sep 15;58(6):468-78. PDF
2. Tuch DS, Salat DH, Wisco JJ, Zaleta AK, Hevelone ND, Rosas HD. Choice reaction time performance correlates with diffusion anisotropy in white matter pathways supporting visuospatial attention. Proc Natl Acad Sci U S A. 2005 Aug 23;102(34):12212-7. PDF
3. Tuch DS, Wisco JJ, Khachaturian MH, Ekstrom LB, Kotter R, Vanduffel W. Q-ball imaging of macaque white matter architecture. Philos Trans R Soc Lond B Biol Sci. 2005 May 29;360(1457):869-79. PDF
4. Niethammer M, Vela P, Tannenbaum A. On the evolution of closed curves by means of vector distance functions. Int. Journal Computer Vision, 2006. PDF
5. Niethammer M, Tannenbaum A, Angenent S. Dynamic active contours. IEEE Trans. Automatic Control. 2006; 51:562-579. PDF
6. Turner JA, Smyth P, Macciardi F, Fallon JH, Kennedy JL, Potkin SG. Imaging phenotypes and genotypes in schizophrenia. Neuroinformatics. 2006;4(1):21-49. PDF

In Press

1. Nain D, Haker S, Bobick A, Tannenbaum A. "Multiscale 3D Shape Representation and Segmentation using Spherical Wavelets", in press, IEEE Transactions on Medical Imaging Special issue on Computational Anatomy.
2. Liu T, Young G, Huang L, Chen N-K, Wong S. “76-space Analysis of Grey Matter Diffusivity: Methods and Applications,” in press, NeuroImage.
3. O’Donnell L, Kubicki M, Shenton ME, Dreusicke MH, Grimson WEL, Westin CF. A method for clustering white matter fiber tracts. AJNR (In Press).
4. Koo MS, Levitt JJ, McCarley RW, Seidman LJ, Dickey CC, Niznikiewicz MA, Voglmaier MM, Zamani P, Long KL, Kim SS, Shenton ME. Reduction of caudate volume in neuroleptic-naive female subjects with schizotypal personality disorder. Biol Psychiatry (In Press).
5. Kuroki N, Kubicki M, Nestor PG, Salisbury DF, Park HJ, Levitt JJ, Woolston S, Frumin M, Niznikiewicz M, Westin CF, Maier SE, McCarley RW, Shenton ME. Fornix integrity and hippocampal volume in male schizophrenic patients. Biol Psychiatry (In Press).
6. Onitsuka T, Niznikiewicz MA, Spencer KM, Frumin M, Kuroki N, Lucia LC, Shenton ME, McCarley RW. Schizophrenia is associated with functional and structural deficits in brain regions subserving face processing. Am J Psychiatry (In Press).
7. Niethammer M, Tannenbaum A, Kalies W, Mischaikow K. Detecting simple points in higher dimensions. IEEE Image Processing, 2006. (In Press).
8. Rathi Y, Dambreville S, Tannenbaum A. Comparative analysis of kernel methods for statistical shape learning. CVAMIA'06, 2006. (In Press).
9. Roth RM, Koven, NS, Randolph JJ, Flashman LA, Pixley HS, Ricketts SM, Wishart HA, Saykin AJ. Event-Related fMRI study of Functional magnetic resonance imaging of executive control in bipolar disorder. NeuroReport, 2006 (In Press).
10. Pohl KM, Fisher J, Grimson WEL, Kikinis R, Wells WM. A bayesian model for joint segmentation and registration. NeuroImage, 2006 (In Press).
11. Fletcher PT, Joshi S. Riemannian Geometry for the Statistical Analysis of Diffusion Tensor Data. Signal Processing, 2006. (In Press).

Peer Reviewed Conference Proceedings

Conferences included here represent the major high quality conferences in medical image analysis (MICCAI, IPMI, MMBIA, ISBI). These conferences only accept submission of full papers and guarantee a peer review process by at least three reviewers and an area chair. Acceptance rates are below 40% for MICCAI, IPMI and MMBIA and around 50% for ISBI.

1. D. Nain, M. Styner, M. Niethammer, J. J. Levitt, M E Shenton, G Gerig, A. Bobick, A. Tannenbaum. Statistical Shape Analysis of Brain Structures using Spherical Wavelets. Accepted in The Fourth IEEE International Symposium on Biomedical Imaging (ISBI ’07), April 12-15, 2007, Washington DC, USA.
2. Kim S, Smyth P. Hierarchical Dirichlet processes with random effects. Advances in Neural Information Processing Systems 19, to appear, 2006. PDF
3. Kim S, Smyth P, Stern H. A nonparametric Bayesian approach to detecting spatial activation patterns in fMRI data. To appear in MICCAI, Oct 2-5, 2006. PDF
4. Nain D, Haker S, Bobick A, Tannenbaum A. Shape-driven surface segmentation using spherical wavelets. MICCAI, LNCS 4190, Oct 2-5, 2006.
5. Styner M, Jomier M, Gerig G: Closed and Open Source Neuroimage Analysis Tools and Libraries at UNC. IEEE Symposium on Biomedical Imaging ISBI. 2006; 702-705. PDF
6. Gerig G, Joshi S, Fletcher T, Gorczowski K, Xu S, Pizer SM, Styner M. Statistics of populations of images and its embedded objects: Driving applications in neuroimaging. IEEE Symposium on Biomedical Imaging ISBI. 2006; 1120-1123. PDF
7. Pieper S, Lorensen W, Schroeder W, Kikinis R. The NA-MIC Kit: ITK, VTK, Pipelines, Grids and 3D Slicer as An Open Platform for the Medical Image Computing Community. IEEE Symposium on Biomedical Imaging ISBI. 2006; 698-701.
8. Pichon E, Westin CF, and Tannenbaum A. A Hamilton-Jacobi-Bellman approach to high angular diffusion tractography. Proceedings of MICCAI, 2005. PDF
9. Yang Y, Zhu L, Haker S, Tannenbaum A. On the harmonic skeleton and vessel data. Proceeedings of MICCAI, 2005. PDF
10. Styner M, Gimpel Smith R, Cascio C, Oguz I, Jomier M. Corpus Callosum Subdivision based on a Probabilistic Model of Inter-hemispheric Connectivity. Medical Image Computing and Computer Assisted Interventions MICCAI. 2005 LNCS 3750;765-772. PDF
11. Liu T, Young G, Huang L, Chen N-K, Wong S. “76-space Analysis of Grey Matter Diffusivity: Methods and Applications,” MICCAI 2005. PDF
12. Pichon E, Tannenbaum A. Curve segmentation using directional information, relation to pattern detection. Proc IEEE International Conference on Image Processing (ICIP), 2005
13. Nain D, Haker S, Bobick A, Tannenbaum A. Multiscale 3D Shape Analysis using Spherical Wavelets. Proc MICCAI, LNCS 3750, Oct 26-29 2005; p 459-467.
14. Corouge I, Fletcher PT, Joshi S, Gilmore JH, Gerig G. Fiber Tract-Oriented Statistics for Quantitative Diffusion Tensor MRI Analysis. Proc. MICCAI, Oct 26-29 2005; LNCS 3749, pp. 131-139
15. Ou W, Golland P. From Spatial Regularization to Anatomical Priors in fMRI Analysis. Proc IPMI, Jul 10-15 2005; LNCS 3565: p 88-100. PDF
16. Pohl KM, Fisher J, Levitt JJ, Shenton ME, Kikinis R, Grimson WEL, Wells WM. A Unifying Approach to Registration, Segmentation, and Intensity Correction, In Proc. MICCAI 2005: Eigth International Conference on Medical Image Computing and Computer Assisted Intervention, Palm Springs, CA, USA, Springer-Verlag, Part I, vol. 3749 of Lecture Notes in Computer Science, pp. 310-318, 2005
17. Pohl KM, Bouix S, Shenton ME, Grimson WEL, Kikinis R. Automatic Segmentation Using Non-Rigid Registration, In short communications of MICCAI 2005: Eighth International Conference on Medical Image Computing and Computer Assisted Intervention, Palm Springs, CA, USA, 2005
18. Martin-Fernandez M, Bouix S, Ungar L, McCarley RW, Shenton ME. Two Methods for Validating Brain Tissue Classifiers. MICCAI 2005, Palm Springs, CA, USA: Duncan J and Gerig G (Eds.): Lecture Notes in Computer Science, volume 3749, pp 515-522, 2005. Springer-Verlag Berlin Heidelberg, 2005. PDF
19. Kim S, Smyth P, Stern H, Turner J. Parametric response surface models for analysis of multi-site fMRI data. In Proc. MICCAI 2005: Eighth International Conference on Medical Image Computing and Computer Assisted Intervention, Palm Springs, CA, USA, Springer-Verlag, Part I, vol. 3749 of Lecture Notes in Computer Science, pp. 352-359, 2005. PDF
20. O'Donnell L, Westin C-F. White Matter Tract Clustering and Correspondence in Populations. MICCAI 2005, Palm Springs, CA, USA: Duncan J, Gerig G (Eds.): Lecture Notes in Computer Science, volume 3749, pp 140-147, 2005. Springer-Verlag Berlin Heidelberg, 2005. PDF
21. M. Maddah, A. Mewes, S. Haker, W. E. L. Grimson, and S. Warfield, , Automated Atlas-Based Clustering of White Matter Fiber Tracts from DTMRI. MICCAI05, Palm Spring, CA,: Lecture Notes in Computer Science, volume 3749, pp. 188-195, 2005.
22. M. Maddah, W. E. L. Grimson, and S. Warfield, , Statistical Modeling and EM Clustering of White Matter Fiber Tracts, ISBI 2006: IEEE 2006 International Symposium on Biomedical Imaging, Arlington, VA, April 6-9, 2006

Book Chapters

1. Nain D, Tannenbaum A, Unal G, Yezzi A, Zeitouni O. On a stochastic model of geometric snakes. Mathematical Methods in Computer Vision: A Handbook, edited by Faugeras O, Paragios N, Springer-Verlag, 2005.
2. Angenent S, Tannenbaum A, Yezzi A, Zeitouni O. Curve shortening and interacting particle systems. Book chapter in a volume edited by Hamid Krim, 2005.

Others

Insight Journal

1. Goodlett C, Corouge I, Jomier M, Gerig G. A Quantitative DTI Fiber Tract Analysis Suite. Insight Journal, 2005.
2. Miller JV. "Probability distributions for the Insight Toolkit." Insight Journal, 2006.
3. Gao Y, Melonakos J, Tannenbaum A. "Conformal Flattening ITK Filter" Insight Journal, 2006.
4. Melonakos J, Krishnan K, Tannenbaum A. An ITK filter for Bayesian segmentation: itkBayesianClassifierImageFilter. Insight Journal, Jan 2006. http://hdl.handle.net/1926/160.
5. Melonakos J, Al-Hakim R, Fallon J, Tannenbaum A. Knowledge-based segmentation of brain MRI scans using the Insight Toolkit. Insight Journal, Oct 2005. http://hdl.handle.net/1926/44.

Conferences and Workshops

1. Rathi Y, Olver P, Sapiro G, Tannenbaum A. Affine Invariant Surface Evolutions for 3D Image Segmentation, SPIE 2006
2. Rathi Y, Dambreville S, Tannenbaum A. Comparative Analyis of Kernel Methods for Statistical Shape Learning, 2nd Workshop on Computer Vision Approaches to Medical Image Analysis (in conjunction with ECCV) 2006.
3. Eric Pichon, Delphine Nain, and Marc Niethammer. A Laplace Equation Approach for Shape Comparison. Proc SPIE Medical Imaging, 2006.
4. Al-Hakim R, Fallon J, Nain D, Melonakos J, Tannenbaum A. A Dorsolateral Prefrontal Cortex Semi-Automatic Segmenter. Proc SPIE Medical Imaging, 2006.
5. Pohl KM, Fisher J, Kikinis R, Grimson WEL, Wells WM. Shape Based Segmentation of Anatomical Structures in Magnetic Resonance Images, In Proc. ICCV 2005: Computer Vision for Biomedical Image Applications: Current Techniques and Future Trend, An International Conference on Computer Vision Workshop, Beijing, China, Springer-Verlag, vol. 3765 of Lecture Notes in Computer Science, 2005
6. Zöllei L, Learned-Miller E, Grimson WEL, Wells WM III. Efficient Population Registration of 3D Data. Proc ICCV 2005, Computer Vision for Biomedical Image Applications; Beijing, China
7. Angenent S, Pichon E, Tannenbaum A. Mathematical methods in medical imaging. Bulletin of American Mathematical Association, 2006.
8. O'Donnell L, Westin C-F. A High-Dimensional Fiber Tract Atlas. accepted to ISMRM 2006.
9. Zöllei L, Wells WM III. Multi-modal Image Registration Using Dirichlet-encoded Prior Information. oral presentation at WBIR06
10. Fletcher PT, Whitaker RT. Riemannian Metrics on the Space of Solid Shapes. accepted to MICCAI'06 Workshop on Mathematical Foundations of Computational Anatomy (MFCA).
11. Cates J, Meyer M, Fletcher PT, Whitaker R. Entropy-Based Particle Systems for Shape Correspondence. accepted to MICCAI'06 Workshop on Mathematical Foundations of Computational Anatomy (MFCA).

Submitted and in Preparation

1. Flashman LA, Roth RM, Pixley HS, Cleavinger HB, Saykin AJ, McAllister TW, Vidaver RM. (submitted). Cavum septum pellucidum in schizophrenia: Clinical and neuropsychological correlates.
2. Szymczak A, Tannenbaum A, Stillman A, Mischaikow K. Vessel cores from 3D imagery: a topological approach. submitted to IEEE Trans. Medical Imaging, 2006.
3. Michailovich O, Tanenbaum A. Fast approximation of smooth functions from samples of partial derivatives. Submitted for publication to IEEE Signal Processing, 2006.
4. Zhu L, Yang Y, Haker S, and Tannenbaum A. An image morphing technique based on optimal mass preserving mapping. Submitted to IEEE Trans. Image Processing, 2006.
5. Rathi Y, Vaswani N, Tannenbaum A, Yezzi Y. Tracking Deforming Objects using Particle Filtering for Geometric Active Contours. Submitted to IEEE PAMI, 2005.
6. Rathi Y, Tannenbaum A. Kernel PCA for shape based segmentation of medical images. submitted to MICCAI, 2006.
7. Gorczowski K, Gerig G, Fletcher T, Pizer SM, Styner M. Statistics of Pose and Shape in Multi-Object Complexes using Principal Geodesic Analysis. submitted to MICCAI, 2006.
8. Goodlett C, Davis B, Jean R, Gilmore J, Gerig G. Improved Correspondence for DTI Population Studies via Unbiased Atlas Building. submitted to MICCAI, 2006.
9. Corouge I, Fletcher PT, Sarang J, Gouttard S, Gerig G. Fiber Tract-Oriented Statistics for Quantitative Diffusion Tensor MRI Analysis. submitted MedIA Journal, Jan. 2006
10. Gribbin M, Clement M, Muller K, Poe M, Cascio C, Jomier M, Piven J, Gerig G. Statistical analysis of diffusion tensor image data based on first principles, submitted MICCAI'06, March 2006
11. Flashman LA, Roth RM, Koven NS, McAllister TW, Vidaver RM, Pendergrass JC. Neural Correlates of Self-Evaluation in Individuals with Schizophrenia. in preparation.
12. Basu S, Fletcher PT, Whitaker RT. Rician Noise Removal in Diffusion Tensor MRI, to appear MICCAI'06.
13. Han X, Fischl B. Intensity Renormalization for Improved Brain MR Image Segmentation across Scanner Platforms, submitted to IEEE Transactions on Medical Imaging.
14. Yu P, Grant P, Qi Y, Han X, Ségonne F, Pienaar R, Busa E, Pacheco J, Makris N, Buckner R, Golland P, Fischl B. Cortical Surface Shape Analysis Based on Spherical Wavelets, submitted to IEEE Transactions on Medical Imaging
15. Ségonne F, Pacheco J, Fischl B. Geometrically-Accurate Topology-Correction of Cortical Surfaces using Non-Separating Loops, submitted to IEEE Transactions on Medical Imaging
16. Voineskos AN, Zai G, Bulgin N, Shaikh S, Lang D, Honer WG, Kennedy JL. MAG but not CNP Gene Associated with Total Brain White Matter. In Preparation. Presented in Part at World Congress of Psychiatric Genetics Annual Meeting. October, 2006.
17. Voineskos AN, Bulgin N, Van Adrichem Q, Wong ACH, Lang D, Honer WG, Kennedy JL. MAG but not CNP Gene Associated with Schizophrenia. In Preparation.