Difference between revisions of "Projects:QIN:3D Slicer Annotation Image Markup:Existing AIM-compatible tools"
From NAMIC Wiki
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{| | {| | ||
|align="left"| | |align="left"| | ||
+ | <pre> | ||
+ | <?xml version="1.0" encoding="UTF-8"?> | ||
+ | <TemplateContainer authors="oslo_mgh" name="RANO_NEW" | ||
+ | version="1.0" description="RANO WITHOUT MEASURABLE DISEASE ASSESSMENT" | ||
+ | creationDate="2011-11-18" xsi:schemaLocation="gme://caCORE.caCORE/3.2/edu.northwestern.radiology.AIMTemplate AIMTemplate_v1rv18.xsd" | ||
+ | xmlns="gme://caCORE.caCORE/3.2/edu.northwestern.radiology.AIMTemplate" | ||
+ | xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"> | ||
+ | <Template name="RANO_NEW" version="1.0" authors="oslo_mgh" | ||
+ | description="Response Assessment in Neuro-Oncology" uid="123.987.32156.8454.1213156464.87987" | ||
+ | codeValue="RANO" codeMeaning="Response Assessment in Neuro-Oncology" codingSchemeDesignator="RANO" | ||
+ | creationDate="2011-11-18"> | ||
+ | <Component label="2-Non-Measurable Disease" minCardinality="1" maxCardinality="1" itemNumber="1" shouldDisplay="true" | ||
+ | explanatoryText="Evaluation of Non-Measurable Disease" authors="mcpinho77"> | ||
+ | <Inference annotatorConfidence="false"/> | ||
+ | <AllowedTerm codeMeaning="Stable Disease" codeValue="RANO1" codingSchemeDesignator="RANO"> | ||
+ | </AllowedTerm> | ||
+ | <AllowedTerm codeMeaning="Progressive Disease" codeValue="RANO4" codingSchemeDesignator="RANO"> | ||
+ | </AllowedTerm> | ||
+ | <AllowedTerm codeMeaning="Baseline" codeValue="RANO0" codingSchemeDesignator="RANO"> | ||
+ | </AllowedTerm> | ||
+ | <AllowedTerm codeMeaning="Not Present" codeValue="RANO5" codingSchemeDesignator="RANO"> | ||
+ | </AllowedTerm> | ||
+ | <AllowedTerm codeMeaning="Non-evaluable" codeValue="RANO6" codingSchemeDesignator="RANO"> | ||
+ | </AllowedTerm> | ||
+ | </Component> | ||
+ | <Component label="3-FLAIR" minCardinality="1" maxCardinality="1" itemNumber="2" shouldDisplay="true" | ||
+ | explanatoryText="Tumor Evaluation on FLAIR" authors="mcpinho77"> | ||
+ | <Inference annotatorConfidence="false"/> | ||
+ | <AllowedTerm codeMeaning="Stable Disease" codeValue="RANO1" codingSchemeDesignator="RANO"> | ||
+ | </AllowedTerm> | ||
+ | <AllowedTerm codeMeaning="Progressive Disease" codeValue="RANO4" codingSchemeDesignator="RANO"> | ||
+ | </AllowedTerm> | ||
+ | <AllowedTerm codeMeaning="Baseline" codeValue="RANO0" codingSchemeDesignator="RANO"> | ||
+ | </AllowedTerm> | ||
+ | <AllowedTerm codeMeaning="Not Present" codeValue="RANO5" codingSchemeDesignator="RANO"> | ||
+ | </AllowedTerm> | ||
+ | <AllowedTerm codeMeaning="Non-evaluable" codeValue="RANO6" codingSchemeDesignator="RANO"> | ||
+ | </AllowedTerm> | ||
+ | </Component> | ||
+ | <Component label="1-Measurable Disease" minCardinality="1" maxCardinality="1" itemNumber="0" | ||
+ | shouldDisplay="true" explanatoryText="Presence or Absence of Measurable Lesions" authors="mcpinho77"> | ||
+ | <Inference annotatorConfidence="false"/> | ||
+ | <AllowedTerm codeMeaning="Yes" codeValue="RANO7" codingSchemeDesignator="RANO"> | ||
+ | </AllowedTerm> | ||
+ | <AllowedTerm codeMeaning="No" codeValue="RANO8" codingSchemeDesignator="RANO"> | ||
+ | </AllowedTerm> | ||
+ | <AllowedTerm codeMeaning="Not Evaluable" codeValue="RANO6" codingSchemeDesignator="RANO"> | ||
+ | </AllowedTerm> | ||
+ | </Component> | ||
+ | </Template> | ||
+ | </TemplateContainer> | ||
+ | </pre> | ||
| | | | ||
{| | {| | ||
− | |[[Image:AIM_template_demo.jpg|thumb|400px|Template-based annotation in ClearCanvas]] | + | |[[Image:AIM_template_demo.jpg|thumb|400px|Template-based annotation in ClearCanvas for the annotation template defined on the left]] |
|} | |} | ||
− | + | |} | |
* ClearCanvas (NOT TCGA ClearCanvas!) DICOM conformance statement: http://www.clearcanvas.ca/dnn/Products/CommunityEdition/tabid/278/Default.aspx | * ClearCanvas (NOT TCGA ClearCanvas!) DICOM conformance statement: http://www.clearcanvas.ca/dnn/Products/CommunityEdition/tabid/278/Default.aspx |
Revision as of 05:12, 10 January 2012
Home < Projects:QIN:3D Slicer Annotation Image Markup:Existing AIM-compatible toolsTCGA ClearCanvas
Using AIM annotations with ClearCanvas, as explained by Justin Kirby.
Prerequisites:
Steps to load images and annotations into ClearCanvas:
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<?xml version="1.0" encoding="UTF-8"?> <TemplateContainer authors="oslo_mgh" name="RANO_NEW" version="1.0" description="RANO WITHOUT MEASURABLE DISEASE ASSESSMENT" creationDate="2011-11-18" xsi:schemaLocation="gme://caCORE.caCORE/3.2/edu.northwestern.radiology.AIMTemplate AIMTemplate_v1rv18.xsd" xmlns="gme://caCORE.caCORE/3.2/edu.northwestern.radiology.AIMTemplate" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"> <Template name="RANO_NEW" version="1.0" authors="oslo_mgh" description="Response Assessment in Neuro-Oncology" uid="123.987.32156.8454.1213156464.87987" codeValue="RANO" codeMeaning="Response Assessment in Neuro-Oncology" codingSchemeDesignator="RANO" creationDate="2011-11-18"> <Component label="2-Non-Measurable Disease" minCardinality="1" maxCardinality="1" itemNumber="1" shouldDisplay="true" explanatoryText="Evaluation of Non-Measurable Disease" authors="mcpinho77"> <Inference annotatorConfidence="false"/> <AllowedTerm codeMeaning="Stable Disease" codeValue="RANO1" codingSchemeDesignator="RANO"> </AllowedTerm> <AllowedTerm codeMeaning="Progressive Disease" codeValue="RANO4" codingSchemeDesignator="RANO"> </AllowedTerm> <AllowedTerm codeMeaning="Baseline" codeValue="RANO0" codingSchemeDesignator="RANO"> </AllowedTerm> <AllowedTerm codeMeaning="Not Present" codeValue="RANO5" codingSchemeDesignator="RANO"> </AllowedTerm> <AllowedTerm codeMeaning="Non-evaluable" codeValue="RANO6" codingSchemeDesignator="RANO"> </AllowedTerm> </Component> <Component label="3-FLAIR" minCardinality="1" maxCardinality="1" itemNumber="2" shouldDisplay="true" explanatoryText="Tumor Evaluation on FLAIR" authors="mcpinho77"> <Inference annotatorConfidence="false"/> <AllowedTerm codeMeaning="Stable Disease" codeValue="RANO1" codingSchemeDesignator="RANO"> </AllowedTerm> <AllowedTerm codeMeaning="Progressive Disease" codeValue="RANO4" codingSchemeDesignator="RANO"> </AllowedTerm> <AllowedTerm codeMeaning="Baseline" codeValue="RANO0" codingSchemeDesignator="RANO"> </AllowedTerm> <AllowedTerm codeMeaning="Not Present" codeValue="RANO5" codingSchemeDesignator="RANO"> </AllowedTerm> <AllowedTerm codeMeaning="Non-evaluable" codeValue="RANO6" codingSchemeDesignator="RANO"> </AllowedTerm> </Component> <Component label="1-Measurable Disease" minCardinality="1" maxCardinality="1" itemNumber="0" shouldDisplay="true" explanatoryText="Presence or Absence of Measurable Lesions" authors="mcpinho77"> <Inference annotatorConfidence="false"/> <AllowedTerm codeMeaning="Yes" codeValue="RANO7" codingSchemeDesignator="RANO"> </AllowedTerm> <AllowedTerm codeMeaning="No" codeValue="RANO8" codingSchemeDesignator="RANO"> </AllowedTerm> <AllowedTerm codeMeaning="Not Evaluable" codeValue="RANO6" codingSchemeDesignator="RANO"> </AllowedTerm> </Component> </Template> </TemplateContainer> |
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- ClearCanvas (NOT TCGA ClearCanvas!) DICOM conformance statement: http://www.clearcanvas.ca/dnn/Products/CommunityEdition/tabid/278/Default.aspx
AIM ePAD (OsiriX)
- Download link: https://cabig.nci.nih.gov/tools/AIM_ePAD
- Current experience: annotations created in ClearCanvas cannot be loaded into ePAD (question posted to AIM mailing list Dec 7, 2011)
- OsiriX DICOM conformance statement: http://www.osirix-viewer.com/DICOMConformanceStatements.pdf