Difference between revisions of "Projects:QIN:3D Slicer Annotation Image Markup:Standard Terminology"
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[[Image:RadLex_RID13419.png]] | [[Image:RadLex_RID13419.png]] | ||
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+ | =Proposed approach for Slicer LUT terminology mapping= | ||
+ | # Start with the GeneralAnatomy LUT (see here: http://www.slicer.org/slicerWiki/index.php/Slicer3:2010_GenericAnatomyColors) | ||
+ | # Using RadLex browser, identify General Anatomy, Segmented Property Category and Segmented Property Type codes (using the hierarchy) for a subset of the GeneralAnatomy LUT entries | ||
+ | # Inherit RGB colors from LUT (note that Segmentation objects allow to encode recommended display color in "Recommended Display CIELab Value" (0062,000D) attribute; these values are encoded in [http://en.wikipedia.org/wiki/Lab_color_space CIALab]). |
Revision as of 15:49, 12 September 2012
Home < Projects:QIN:3D Slicer Annotation Image Markup:Standard TerminologyThis is a collection of relevant pieces from:
Contents
Segmentation image module attributes
Segmentation image module attributes must in particular include the following (PS 3.3-2011, p.989):
Code sequence attributes
General Anatomy Macro
The General Anatomy Macro is defined as follows (PS 3.3-2011, p.96):
Coding Scheme Designators
NOTE: this table is incomplete, consult PS 3.16-2011 p.43.
RadLex
- General information: http://rsna.org/RadLex.aspx
- License: http://rsna.org/uploadedFiles/RSNA/Content/Informatics/radlex_public_license_version_1-0-1.pdf
- Example hierarchy of the term mapping from RadLex browser (liver: http://www.radlex.org/RID/RID13419):
Proposed approach for Slicer LUT terminology mapping
- Start with the GeneralAnatomy LUT (see here: http://www.slicer.org/slicerWiki/index.php/Slicer3:2010_GenericAnatomyColors)
- Using RadLex browser, identify General Anatomy, Segmented Property Category and Segmented Property Type codes (using the hierarchy) for a subset of the GeneralAnatomy LUT entries
- Inherit RGB colors from LUT (note that Segmentation objects allow to encode recommended display color in "Recommended Display CIELab Value" (0062,000D) attribute; these values are encoded in CIALab).