Difference between revisions of "Projects:QIN:3D Slicer Annotation Image Markup:Use cases"
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(Created page with 'The following is the list of the annotation/markup use cases provided by the QIN groups. Use cases were described using the following template: File:QINUseCaseTemplate.doc F…') |
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''Use case incomplete, verbal description only'' | ''Use case incomplete, verbal description only'' | ||
| − | + | {| | |
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* Contact: Daniel Rubin | * Contact: Daniel Rubin | ||
* Image type: liver CT | * Image type: liver CT | ||
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* Tool used: EPAD | * Tool used: EPAD | ||
* Preprocessing: none | * Preprocessing: none | ||
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| + | [[Image:QINUseCase_Stanford.png]] | ||
| + | |} | ||
=NCI: BreastDx= | =NCI: BreastDx= | ||
| + | {| | ||
| + | |align="left"| | ||
* Contact: Justin Kirby | * Contact: Justin Kirby | ||
* Image type: breast MRI | * Image type: breast MRI | ||
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* Tool used: TCGA ClearCanvas | * Tool used: TCGA ClearCanvas | ||
* Preprocessing: none | * Preprocessing: none | ||
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| + | [[Image:QINUseCase_NCI.png]] | ||
| + | |} | ||
=MGH: GBM= | =MGH: GBM= | ||
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''Use case partially complete, markup not included'' | ''Use case partially complete, markup not included'' | ||
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* Contact: Jayashree Kalpathy-Cramer | * Contact: Jayashree Kalpathy-Cramer | ||
* Images: multi-modal brain MRI | * Images: multi-modal brain MRI | ||
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* Tool used for the use case: TCGA ClearCanvas. Other tools used: Slicer, Alice. | * Tool used for the use case: TCGA ClearCanvas. Other tools used: Slicer, Alice. | ||
* Preprocessing: registration, motion correction, resampling (not included in the provided dataset) | * Preprocessing: registration, motion correction, resampling (not included in the provided dataset) | ||
| + | | | ||
| + | [[Image:QINUseCase_MGH.png]] | ||
| + | |} | ||
=Iowa: Lung= | =Iowa: Lung= | ||
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''Use case incomplete, verbal description only'' | ''Use case incomplete, verbal description only'' | ||
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* Contact: Milan Sonka | * Contact: Milan Sonka | ||
* Images: PET, CT, MRI lungs | * Images: PET, CT, MRI lungs | ||
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* Markup: binary segmentation, unidimensional, bi-dimensional, three-dimensional, 4-dimensional, activity measurement and location | * Markup: binary segmentation, unidimensional, bi-dimensional, three-dimensional, 4-dimensional, activity measurement and location | ||
* Tools used: Slicer, Syngo via, Pinnacle, in-house tools | * Tools used: Slicer, Syngo via, Pinnacle, in-house tools | ||
| − | + | | | |
| + | [[Image:QINUseCase_Iowa.png]] | ||
| + | |} | ||
=Moffitt: Lung lesion= | =Moffitt: Lung lesion= | ||
''Use case incomplete, verbal description only. Masks and sample images are available (restricted access)'' | ''Use case incomplete, verbal description only. Masks and sample images are available (restricted access)'' | ||
| − | + | {| | |
| + | |align="left"| | ||
* Contact: Dmitry Goldgof | * Contact: Dmitry Goldgof | ||
* Images: Lung CT | * Images: Lung CT | ||
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* Markup: binary segmentation of ROI | * Markup: binary segmentation of ROI | ||
* Tools used: in-house Matlab | * Tools used: in-house Matlab | ||
| + | | | ||
| + | [[Image:QINUseCase_Moffitt.png]] | ||
| + | |} | ||
=Maastro: Lung lesion= | =Maastro: Lung lesion= | ||
| − | + | {| | |
| + | |align="left"| | ||
* Contact: Andre Dekker | * Contact: Andre Dekker | ||
* Images: Lung CT | * Images: Lung CT | ||
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* Markup: DICOM RTSTRUCT | * Markup: DICOM RTSTRUCT | ||
* Tools used: RT-specific tools | * Tools used: RT-specific tools | ||
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| + | [[Image:QINUseCase_Maastro.png]] | ||
| + | |} | ||
=BWH: Prostate cancer= | =BWH: Prostate cancer= | ||
| − | + | {| | |
| + | |align="left"| | ||
* Contact: Andrey Fedorov | * Contact: Andrey Fedorov | ||
* Images: Prostate MRI | * Images: Prostate MRI | ||
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* Tools used: Slicer | * Tools used: Slicer | ||
* Preprocessing: registration of the DCE, DWI, T1w parameters to T2w MRI | * Preprocessing: registration of the DCE, DWI, T1w parameters to T2w MRI | ||
| + | | | ||
| + | [[Image:QINUseCase_BWH.png]] | ||
| + | |} | ||
Revision as of 20:32, 4 January 2012
Home < Projects:QIN:3D Slicer Annotation Image Markup:Use casesThe following is the list of the annotation/markup use cases provided by the QIN groups. Use cases were described using the following template: File:QINUseCaseTemplate.doc
For the use case to be considered complete, it must include:
- textual description, based on the form above
- screenshots of the annotations as they appear in the tool used by the site
- images being annotated
- markup/annotations
- description of how the markup/annotations can be reproduced
Contents
Stanford: Liver lesion
Use case incomplete, verbal description only
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NCI: BreastDx
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MGH: GBM
Use case partially complete, markup not included
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Iowa: Lung
Use case incomplete, verbal description only
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Moffitt: Lung lesion
Use case incomplete, verbal description only. Masks and sample images are available (restricted access)
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Maastro: Lung lesion
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BWH: Prostate cancer
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