Difference between revisions of "Iowa-March-20-2012-Slicer-Workshop"
From NAMIC Wiki
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'''Agenda to be finalized by Milan Sonka, based on email communication of BWH and Iowa teams''' | '''Agenda to be finalized by Milan Sonka, based on email communication of BWH and Iowa teams''' | ||
− | Items of interest: | + | Items of interest (Reinhard Beichel): |
*AIM - general overview + discussion (~1 h) | *AIM - general overview + discussion (~1 h) | ||
* Discussion of BWH QIN use-case (~30 min) | * Discussion of BWH QIN use-case (~30 min) | ||
Line 95: | Line 95: | ||
* AIM/Slicer project - overview + discussion: 2D/3D/4D objects, AIM toolkit concept vs. specific use-case implementation, ... (~2h) | * AIM/Slicer project - overview + discussion: 2D/3D/4D objects, AIM toolkit concept vs. specific use-case implementation, ... (~2h) | ||
* Slicer 4 - module development, GUI design, future directions, development support, etc. (~1-2h; I'm not sure if this will be covered by other presentations and who would be the right person for this) | * Slicer 4 - module development, GUI design, future directions, development support, etc. (~1-2h; I'm not sure if this will be covered by other presentations and who would be the right person for this) | ||
+ | |||
+ | Andrey's sugested items | ||
+ | <pre> | ||
+ | 1) Slicer 4.0 status and future (~30 min -- beyond what will be | ||
+ | covered by the general workshop program, Fedorov) | ||
+ | * what is currently available | ||
+ | * what is being actively developed and should be available soon | ||
+ | * it would help if Iowa collect specific set of questions according | ||
+ | to your needs | ||
+ | 2) AIM 3.0 overview (~1 hr, Fedorov + Iowa AIM experts) | ||
+ | * concepts and motivation for structured reporting | ||
+ | * AIM | ||
+ | * alternatives (e.g., DICOM SR) | ||
+ | * available support: user-level tools, toolkits | ||
+ | * limitations | ||
+ | 3) Slicer/AIM integration plans and status (~30 min, Fedorov) | ||
+ | * connection with the existing Slicer functionality | ||
+ | * supported annotation types | ||
+ | * user-level workflow | ||
+ | * limitations | ||
+ | |||
+ | 4) BWH QIN use case (~30-45 min, Fedorov) | ||
+ | * research questions of our interest | ||
+ | * kinds of data being analyzed | ||
+ | * processing workflows | ||
+ | * use of Slicer | ||
+ | * applicability of AIM | ||
+ | 5) Iowa QIN use case (~1 hr, Iowa) | ||
+ | * I would like to learn specifically about Iowa bioinformatics | ||
+ | infrastructure (use of XNAT, other components) | ||
+ | |||
+ | 6) Brainstorming/discussion of AIM applicability, alternatives (~1hr) | ||
+ | |||
+ | 6) Focused discussion for developers, as Reinhard suggested (~1-2 hr, | ||
+ | need to coordinate with the general program events to avoid | ||
+ | duplication) | ||
+ | </pre> | ||
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Revision as of 19:21, 25 February 2012
Home < Iowa-March-20-2012-Slicer-WorkshopTraining Faculty
- Ron Kikinis, M.D., Surgical Planning Laboratory, Harvard Medical School, Boston, MA
- Sonia Pujol, Ph.D., Surgical Planning Laboratory, Harvard Medical School, Boston, MA
- Demian Wasserman, Ph.D., Brigham and Women's Hospital, Boston, MA
- Andrey Fedorov, Ph.D., Surgical Planning Laboratory, Harvard Medical School, Boston, MA
- Hans Johnson, Ph.D., University of Iowa, Iowa City, IA
- Vince Magnotta, Ph.D., University of Iowa, Iowa City, IA
- David Welch, University of Iowa, Iowa City, IA
- Eric Axelson, University of Iowa, Iowa City, IA
- Joy Matsui, University of Iowa, Iowa City, IA
Logistics
- Date: Tuesday March 20th and Wednesday March 21st, 2012
- Location: Information Commons West (2nd floor), Hardin Library, University of Iowa, Iowa City
- 2010 Workshop Flyer
- Slicer version: Slicer 4
The software and workshop datasets will be posted a few weeks before the event.
Tentative Agenda
Time | Tuesday, March 20, 2012 | |
9:00-9:10 AM | Welcome (Ron Kikinis) | |
9:10-9:55 AM | Slicer Basics (Sonia Pujol) | |
9:55-10:45 AM | DTI (Demian Wasserman) | |
10:45-11:00 AM | Coffee Break | |
11:00-12:15 PM | Neurosurgical Workflow (Sonia Pujol) | |
12:15-1:30 PM | Lunch | |
1:30-3:00 PM | XNAT, Registration (Hans Johnson) | |
3:00-3:30 PM | Coffee Break | |
3:30-5:00 PM | Quantitative Imaging (Andrey Fedorov) | |
Time | Wednesday, March 21, 2012 | |
09:00-9:45 AM | Developing for Slicer: An Introduction to SEM (Andriy Fedorov/Sonia Pujol) | |
9:45-10:15 AM | SimpleITK with Slicer (Hans Johnson) | |
10:15-10:30 AM | Coffee Break | |
10:30 AM-11:30 PM | Slicer Customization with Scripting (Demian Wasserman/Sonia Pujol) | |
11:30-12:00 PM | Concluding Remarks and Feedback | |
1:00-5:00 PM | DWI Discussion (Demian Wasserman) (By invitation only) | QIN Discussion (Andriy Fedorov) (By invitation only) |
BWH/Iowa QIN/AIM meeting (March 22)
Agenda to be finalized by Milan Sonka, based on email communication of BWH and Iowa teams
Items of interest (Reinhard Beichel):
- AIM - general overview + discussion (~1 h)
- Discussion of BWH QIN use-case (~30 min)
- Discussion of Iowa QIN use-case - H&N (~1-2 h)
- Discussion of Iowa bioinformatics infrastructure setup: XNAT, databases, application to Iowa use cases (~30 min)
- AIM/Slicer project - overview + discussion: 2D/3D/4D objects, AIM toolkit concept vs. specific use-case implementation, ... (~2h)
- Slicer 4 - module development, GUI design, future directions, development support, etc. (~1-2h; I'm not sure if this will be covered by other presentations and who would be the right person for this)
Andrey's sugested items
1) Slicer 4.0 status and future (~30 min -- beyond what will be covered by the general workshop program, Fedorov) * what is currently available * what is being actively developed and should be available soon * it would help if Iowa collect specific set of questions according to your needs 2) AIM 3.0 overview (~1 hr, Fedorov + Iowa AIM experts) * concepts and motivation for structured reporting * AIM * alternatives (e.g., DICOM SR) * available support: user-level tools, toolkits * limitations 3) Slicer/AIM integration plans and status (~30 min, Fedorov) * connection with the existing Slicer functionality * supported annotation types * user-level workflow * limitations 4) BWH QIN use case (~30-45 min, Fedorov) * research questions of our interest * kinds of data being analyzed * processing workflows * use of Slicer * applicability of AIM 5) Iowa QIN use case (~1 hr, Iowa) * I would like to learn specifically about Iowa bioinformatics infrastructure (use of XNAT, other components) 6) Brainstorming/discussion of AIM applicability, alternatives (~1hr) 6) Focused discussion for developers, as Reinhard suggested (~1-2 hr, need to coordinate with the general program events to avoid duplication)
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