Difference between revisions of "Projects:QIN:3D Slicer Annotation Image Markup:Use cases"

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Latest revision as of 22:57, 22 March 2012

Home < Projects:QIN:3D Slicer Annotation Image Markup:Use cases

The following is the list of the annotation/markup use cases provided by the QIN groups. Use cases were described using the following template: File:QINUseCaseTemplate.doc

For the use case to be considered complete, it must include:

  • textual description, based on the form above
  • screenshots of the annotations as they appear in the tool used by the site
  • images being annotated
  • markup/annotations
  • description of how the markup/annotations can be reproduced

Stanford: Liver lesion

Use case incomplete, verbal description only

  • Contact: Daniel Rubin
  • Image type: liver CT
  • Annotation: N/A
  • Markup: uni-dimensional measurement
  • Tool used: EPAD
  • Preprocessing: none

QINUseCase Stanford.png

NCI: BreastDx

  • Contact: Justin Kirby
  • Image type: breast MRI
  • Annotation: template-based. Template used for textual annotation: File:NCI BreastDx AIM template.xml
  • Markup: uni-dimensional measurement of the lesion.
  • Tool used: TCGA ClearCanvas
  • Preprocessing: none

500px

MGH: GBM

Use case partially complete, markup not included

  • Contact: Jayashree Kalpathy-Cramer
  • Images: multi-modal brain MRI
  • Annotation: template-based. Template used for textual annotation: File:MGH GBM AIM template.xml
  • Markup: binary segmentation of ROI (not included in the use case, not supported by ClearCanvas).
  • Tool used for the use case: TCGA ClearCanvas. Other tools used: Slicer, Alice.
  • Preprocessing: registration, motion correction, resampling (not included in the provided dataset)

500px

Iowa: Head and Neck cancer

Use case incomplete, verbal description only

  • Contact: Milan Sonka
  • Images: PET, CT, MRI lungs
  • Annotation: yes and no sometimes
  • Markup: binary segmentation, unidimensional, bi-dimensional, three-dimensional, 4-dimensional, activity measurement and location
  • Tools used: Slicer, Syngo via, Pinnacle, in-house tools

QINUseCase Iowa.png

QINUseCase-Sutherland-Beichel-whiteboard.png

Moffitt: Lung lesion

Use case incomplete, verbal description only. Masks and sample images are available (restricted access)

  • Contact: Dmitry Goldgof
  • Images: Lung CT
  • Annotation: none
  • Markup: binary segmentation of ROI
  • Tools used: in-house Matlab

500px

Maastro: Lung lesion

  • Contact: Andre Dekker
  • Images: Lung CT
  • Annotations: N/A
  • Markup: DICOM RTSTRUCT
  • Tools used: RT-specific tools

QINUseCase Maastro.png

BWH: Prostate cancer

  • Contact: Andrey Fedorov
  • Images: Prostate MRI
  • Annotations: none
  • Markup: binary ROI mask drawn on T2w MRI
  • Tools used: Slicer
  • Preprocessing: registration of the DCE, DWI, T1w parameters to T2w MRI

500px

OHSU: Breast cancer

Use case incomplete, verbal description only

  • Contact: Fred Loney
  • Images: DCE MRI
  • Annotations: N/A
  • Markup: uni- and bi-dimensional measurements, lesion ROI markup
  • Tools used: PACS platform, or in-house-developed Matlab-based software
  • Preprocessing: N/A
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