Difference between revisions of "2014 Summer Project Week:Pluggable Label Statistics"

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*Bradley Lowekamp, NIH
 
*Bradley Lowekamp, NIH
 
==Project Description==
 
==Project Description==
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Investigate a pluggable version of the Label Statistics module that supports extensible features added by the user ( in addition to the default features ).
 
 
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<h3>Objective</h3>
 
<h3>Objective</h3>
−
*Create a module with default statistics.
+
Our aim is to develop an module for calculating various statistical measures over image ROI that expands upon the currently available capabilities of [http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/LabelStatistics Slicer LabelStatistics module]. Some of the desired features include:
−
*Add ability to extend the features list with user-defined plug-ins.
+
* pluggable set of "feature" calculators
 +
* "jump to label" feature
 +
* support of terminologies defining the features
 +
* what else?
 
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<div style="width: 27%; float: left; padding-right: 3%;">
 
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<h3>Approach, Plan</h3>
 
<h3>Approach, Plan</h3>
−
*Determine requirements of the module.
+
* determine requirements of the module
−
*Research the [https://github.com/pieper/LandmarkRegistration Landmark Registration] extension for how to use extensible features.
+
* discuss the options for implementing pluggable list of features
−
*Also consider format of the [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/Reporting Reporting] extension.
+
** define a category for feature calculators? or create wrappers and add them manually?
 +
* discuss how we can pass semantical information associated with the feature sets (terminology), should this be done at the SEM level?
 +
* consider [https://github.com/pieper/LandmarkRegistration Landmark Registration] extension for how to use extensible features
 +
* consider using [http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Extensions/Reporting Reporting] extension
 +
* integrate quantitative features implemented in [https://github.com/QIICR/ProjectIssuesAndWiki/wiki/Quantitative-Indices-Extension PET Quantitative indices extension]
 
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Revision as of 21:47, 20 June 2014

Home < 2014 Summer Project Week:Pluggable Label Statistics

Key Investigators

  • Andrey Fedorov, BWH
  • Ethan Ulrich, Univ. of Iowa
  • Steve Pieper, Isomics
  • Bradley Lowekamp, NIH

Project Description

Objective

Our aim is to develop an module for calculating various statistical measures over image ROI that expands upon the currently available capabilities of Slicer LabelStatistics module. Some of the desired features include:

  • pluggable set of "feature" calculators
  • "jump to label" feature
  • support of terminologies defining the features
  • what else?

Approach, Plan

  • determine requirements of the module
  • discuss the options for implementing pluggable list of features
    • define a category for feature calculators? or create wrappers and add them manually?
  • discuss how we can pass semantical information associated with the feature sets (terminology), should this be done at the SEM level?
  • consider Landmark Registration extension for how to use extensible features
  • consider using Reporting extension
  • integrate quantitative features implemented in PET Quantitative indices extension

Progress

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