Events:VT-NAMIC-NCBC-Collaboration-meeting-2009

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Logistics

Confirmed date: Friday, October 9, 2009, 9am-4pm (time is tentative, but room has been reserved, confirmed with Katie Mastrogiacomo)
Location: 1249 Boylston Street, 2nd floor conference room

To be completed or partially completed prior to the meeting by Andriy Fedorov and Ginger Li (Oct 7-8):
- Provide necessary user- and developer-level Slicer training for Ginger
- Understand the currently used processing workflow
- Confirm reproducibility of the processing steps between VT and SPL
- Document the processing steps as precisely as necessary for reproducibility and cross-validation of the results (wiki page)
To be completed during the meeting
- Review and confirm the correctness of the workflow based on the wiki documentation (Chris, Ron and Sandy)
- Review the available data and current segmentation results
- Discuss action timeline for the remaining part of the funded project period
- Discuss publication plans

Review, discuss and finalize the processing workflow (to be discussed and documented by Andriy Fedorov and Ginger Li prior to the meeting Oct 7-8)
- atlas construction
- image pre-processing
- registration
- segmentation
Review currents results
Identify Slicer components of the workflow that are ... working, broken, missing

Open to all interested parties:

Measuring alcohol and stress interaction NCBC Collaboration page
Atlas construction workflow, put together by Ginger prior to the meeting
Slicer 2 vs. Slicer 3 EM Segmentation performance qualitative comparison, completed by Ginger prior to the meeting
Atlas construction workflow off BSL web site
Evaluation of BRAINSFit performance on atlas-to-subject vervet registration, completed by Andrey prior to the meeting
M. Styner, R. Knickmeyer, S. Joshi, C. Coe, S. J. Short, and J. Gilmore. Automatic brain segmentation in rhesus monkeys. Proc SPIE Medical Imaging Conference, Proc SPIE Vol 6512 Medical Imaging 2007, pp 65122L-1 - 65122L-8 pdf