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Dates:
- Project Activities will be held between Monday, January 5th and Friday, January 9th.
Registration:
Venue:
Agenda
Floorplan
Background
Project Week is a hands on activity -- programming using the open source NA-MIC Kit, algorithm design, and clinical application -- that has become one of the major events in the NA-MIC, NCIGT, and NAC calendars. It is held in the summer at MIT, typically the last week of June, and a shorter version is held in Salt Lake City in the winter, typically the second week of January.
Active preparation begins 6-8 weeks prior to the meeting, when a kick-off teleconference is hosted by the NA-MIC Engineering, Dissemination, and Leadership teams, the primary hosts of this event. Invitations to this call are sent to all NA-MIC members, past attendees of the event, as well as any parties who have expressed an interest in working with NA-MIC. The main goal of the kick-off call is to get an idea of which groups/projects will be active at the upcoming event, and to ensure that there is sufficient NA-MIC coverage for all. Subsequent teleconferences allow the hosts to finalize the project teams, consolidate any common components, and identify topics that should be discussed in breakout sessions. In the final days leading upto the meeting, all project teams are asked to fill in a template page on this wiki that describes the objectives and plan of their projects.
The event itself starts off with a short presentation by each project team, driven using their previously created description, and allows all participants to be acquainted with others who are doing similar work. In the rest of the week, about half the time is spent in breakout discussions on topics of common interest of subsets of the attendees, and the other half is spent in project teams, doing hands-on programming, algorithm design, or clinical application of NA-MIC kit tools. The hands-on activities are done in 10-20 small teams of size 3-5, each with a mix of experts in NA-MIC kit software, algorithms, and clinical. To facilitate this work, a large room is setup with several tables, with internet and power access, and each team gathers on a table with their individual laptops, connects to the internet to download their software and data, and is able to work on their projects. On the last day of the event, a closing presentation session is held in which each project team presents a summary of what they accomplished during the week.
A summary of all past NA-MIC Project Events is available here.
Please make sure that you are on the na-mic-project-week mailing list
Projects
Image-Guided Therapy
- SlicerIGT extension: testing, tutorials, website (Tamas Ungi, Nobuhiko Hata, Tina Kapur)
- Robot Control With OpenIGTLink ( Gregory Fischer WPI, Nirav Patel WPI, Nobuhiko Hata BWH)
- Visual Guidance for Neurosurgery US Data Recording
(Alireza, Isaiah, Rahul, Matthew, Tina, Steve, Sandy, Alex Golby)
- Gestural Point of Care Interface for IGT (Saskia, Franklin, Steve, Tobias, Andras)
- Steered image registration using intelligent interfaces for minimal user interaction (Marcel Prastawa, Jim Miller, Steve Pieper)
- CBC 3D I2M Conversion (Fotis Drakopoulos, Yixun Liu, Andrey Fedorov, Ron Kikinis, Nikos Chrisochoides)
- An ITK implementation of Physics-Based Non-Rigid Registration method for Brain Shift (Fotis Drakopoulos, Yixun Liu, Andriy Kot, Andrey Fedorov, Olivier Clatz, Ron Kikinis, Nikos Chrisochoides)
- Open-source electromagnetic trackers using OpenIGTLink (Peter Traneus Anderson, Tina Kapur, Sonia Pujol)
- Intraoperative Registration of preoperative CT and C-arm CT of the lung (Katharina Breininger, Jay Jagadeesan)
- Making realistic clinical story board for image guided skull base endoscopic surgery (Keryn Palmer, Nobuhiko Hata)
- PathExplorer Extension (code refactoring, documentation, tutorial) (Laurent Chauvin, Tamas Ungi, Nobuhiko Hata)
- MR-Ultrasound Registration for Prostate Interventions (Andriy Fedorov, Chenxi Zhang, Andras Lasso)
- Surface approximation from contour points (Chenxi Zhang, Csaba Pinter, Andrey Fedorov)
- Tools for Dysplasia Identification in Epilepsy (Luiz Murta; Emylin Souza; Tina Kapur; Ron Kikinis)
- Focused Ultrasound Pressure Sensor (Robin Kouver, Nassim Alikacem)
- Focused Ultrasound Positioner (Nassim Alikacem, Robin Kouver)
- Searching for Software Platform for Robotic Surgery (Yangming Li)
- Rapid Visualization of Large Image Collections (Adrian, Ramesh, Polina)
- Ventriculostomy Guidance with Transcranial Ultrasound
(Jason White, Kirby Vosburgh, Can Meral, Alex Golby)
- Calibration of EM-tracked US acquisition using Plus (Andrey Fedorov, Tamas Ungi, Andras Lasso, Jay Jagadeesan)
Huntington's Disease
- Fiber Tract Dispersion and UKF Tractography (Peter Savadjiev, Yogesh Rathi, Hans Johnson, C-F Westin)
- 4D Segmentation for Longitudinal Consistency (Regina Kim, James Fishbaugh, Guido Gerig, Hans Johnson)
- Automated Prior-driven Segmentation QA (Dave Welch, Hans Johnson)
- Manual Segmentation QA (Dave Welch, Hans Johnson)
- Update BRAINSTools (BRAINSFit and DWIConvert) in Slicer (Hans Johnson, Dave Welch, Kent Williams, JC, Brad)
- Cardiac Agatston Scoring Extension (Jessica Forbes, Hans Johnson)
TBI
Stroke
Cardiac
Chronic Obstructive Pulmonary Disease, Lung, Chest
Head and Neck Cancer / Radiotherapy
- Real world value mapping support (Ethan, Andrey, Andras, Steve, Jim)
- Proper formatting of DICOM Derived Data from CLI (Steve, Andrey, Jim, {Michael and David remotely})
- DICOM SEG conversion to support archival of QIN Grand challenges results (Jayashree, Andrey, Steve, {David remotely})
- Color Bar Support for Slice Views (Alireza, Andrey, Steve, Kevin)
- Slicer DICOM Improvements (Alireza, Andrey, Steve, Ron)
Additional Brain Image Analysis
- Shape Analysis for the developing murine skull (Murat Maga, Ryan Young, Seattle Chidren's Hospital).
- Slicer Interface to LDDMM shape anlaysis (Saurabh Jain, JHU; Steve Pieper, Isomics; Josh Cates, SCI, Utah; Hans Johnson, Iowa; Martin Styner, UNC)
- Atlas Selection (Kanglin Chen, Gregory Sharp)
- CAD Toolbox for Neurological Disorders (Sidong Liu, Siqi Liu, Fan Zhang, Yang Song, Weidong Cai, Sonia Pujol, Ron Kikinis)
- Longitudinal patient-specific DTI analysis using Slicer for neonatal asphyxia (Anuja Sharma, SCI, Utah; Francois Budin, UNC; Martin Styner, UNC; Guido Gerig, SCI, Utah)
- Pipeline Visualization (Ramesh, Adrian, Polina)
Slicer4 Extensions
TMJOA RO1 - Collaboration with NAMIC
- TMJOA (Francois Budin, Beatriz Paniagua, Lucia Cevidanes, Nicole Aucoin, Steve Pieper, Jean-Christophe Fillion-Robin, Alex Yarmarkovich)
Infrastructure
- Chronicle (Steve)
- Post NA-MIC Factory and Testing (Steve, Jc, Ron)
- Volume Registration (Steve, Greg, Marcel, Jim)
- Markups (Nicole Aucoin)
- Pluggable Label Statistics (Andrey , Ethan, Steve, Brad, Jim)
- Subject hierarchy integration (Csaba, Steve, Jc, Andras)
- Contours (Adam Rankin, Csaba, Andras, Steve, Jc)
- Parameter Node Serialization (Kevin Wang, Steve, Jim, Jc, Matt, Nicole)
- Self-tests for non-linear transforms (Xining Du)
- Slicer Tutorial Updates (Parth Amin, Farukh Kohistan, Sonia Pujol)
Logistics
- Dates: June 23-27, 2014.
- Location: Stata Center / RLE MIT.
- REGISTRATION: https://www.regonline.com/namic2014summerprojectweek. Please note that as you proceed to the checkout portion of the registration process, RegOnline will offer you a chance to opt into a free trial of ACTIVEAdvantage -- click on "No thanks" in order to finish your Project Week registration.
- Registration Fee: $300.
- Hotel: Similar to previous years, no rooms have been blocked in a particular hotel.
- Room sharing: If interested, add your name to the list: here
Registrants
Do not add your name to this list - it is maintained by the organizers based on your paid registration. (... Please click here to register.])
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