2008 Summer Project Week
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Logistics
- Dates: June 23-27, 2008
- Location: MIT. Grier Rooms A & B: 34-401A & 34-401B.
- Registration Fee: $260 (covers the cost of breakfast, lunch and coffee breaks for the week). Due by Friday, June 13th, 2008. Please make checks out to "Massachusetts Institute of Technology" and mail to: Donna Kaufman, MIT, 77 Massachusetts Ave., 38-409a, Cambridge, MA 02139. Receipts will be provided by email as checks are received. Please send questions to dkauf at mit.edu. If you are attending for one day only, the registration fee is not required.
- Registration Method The event is full. Tkapur 18:12, 17 June 2008 (UTC)
- Hotel: We have a group rate of $239/night (plus tax) for a room with either 1 king or 2 queen beds at the Hotel at MIT (now called Le Meridien). Please click here to reserve. This rate is good only through June 1.
- Here is some information about several other Boston area hotels that are convenient to NA-MIC events: Boston_Hotels. Summer is tourist season in Boston, so please book your rooms early.
- 2008 Summer Project Week Template
- Last Year's Projects as a reference
- For hosting projects, we are planning to make use of the NITRC resources. See Information about NITRC Collaboration
- Next Project Week in Utah -- January 5-9, 2009
Introduction to NA-MIC Project Week
Please read an introduction about these events here.
Agenda
- Monday
- noon-1pm lunch
- 1pm: Welcome (Ron Kikinis)
- 1:05-3:30pm Introduce Projects using templated wiki pages (all Project Leads) (Wiki Template)
- 3:30-5:30pm Start project work
- Tuesday
- 8:30am breakfast
- 9:00-9:45am: NA-MIC Software Process
- 10-10:30am Slicer 3.0 Update (Jim Miller, Steve Pieper)
- 11-12noon Performance tuning for Slicer 3.2 (Ron Kikinis)
- noon lunch
- 2:30-3:30pm: Project Week 2008 Special topic breakout: XNAT Database (Daniel Marcus)
- 5:30pm adjourn for day
- Wednesday
- 8:30am breakfast
- 9:00-12pm Project Week 2008 Special topic breakout: ITK (Luis Ibanez)
- noon lunch
- 2:30-3:30pm: Project Week 2008 Special topic breakout: Non-rigid Registration (Stephen Aylward)
- 5:30pm adjourn for day
- Thursday
- 8:30am breakfast
- noon lunch
- 2:30-3:30pm Project Week 2008 Special topic breakout: GWE (Marco Ruiz)
- 5:30pm adjourn for day
- Friday
- 8:30am breakfast
- 10am-noon: Project Progress using update Project Wiki pages
- noon lunch boxes and adjourn. (Next one in Utah the week of Jan 5, 2009)
Projects
DBP II
These are projects by the new set of DBPS:
- Velocardio Facial Syndrome (VCFS) as a Genetic Model for Schizophrenia (Harvard: Marek Kubicki, PI)
- EPI-DWI Distortion correction (Sylvain Bouix BWH, Tauseef Rehman GATech)
- EPI-DWI Eddy Current distortion correction (Sylvain Bouix BWH, Ran Tao Utah)
- Lobe Parcellation of 3T MR data - need help parametrization (Sylvain Bouix BWH, Priya Srinivasan BWH, Brad Davis Kitware)
- Finsler method (John Melonakos GATech, Marek Kubicki BWH)
- Group Analysis on DTI (Casey Goodlett Utah, Marek Kubicki BWH)
- Longitudinal MRI Study of Early Brain Development in Autism (UNC: Heather Hazlett, Joseph Piven, PI)
- Work Flow Tool for regional cortical thickness pipeline (Clement Vachet UNC)
- NITRC registration of cortical thickness modules (Clement Vachet UNC)
- DWI DTI Prep Tools (Zhexing Liu UNC)
- Analysis of Brain Lesions in Lupus (MIND/UNM: Jeremy Bockholt, Charles Gasparovic PI)
- Segmentation and Registration Tools for Robotic Prostate Intervention (Queens/JHU: Gabor Fichtinger, PI)
- Trans-Rectal Prostate Biopsy module (David Gobbi, Gabor Fichtinger, Queens/JHU)
- Prostate Segmentation and Registration (Yi Gao GATech, Gabor Fichtinger JHU)
- Hardware/software overlay for percutaneous intervention (PERK Station) (Siddharth Vikal, Gabor Fichtinger, Queens/JHU)
Other Projects
- Eddy current and head motion correction of DWIs (Ran Tao, Utah, Sylvain Bouix, BWH, Xiaodong Tao, GE, Tom Fletcher, Utah)
- Integraton of groupwise b-spline registration into atlas building (Casey Goodlett, Serdar Balci)
- CVS / SVN auto synchronization
- 3D Widgets in Slicer (Nicole Aucoin, Will Schroeder)
- Issues with existing widgets
- Design of new widgets
- Batch processing in the NAMIC Kit (Julien, Marco, Steve, Jim)
- Module Chaining (Marco, Jim, Steve, Dan B., Luca)
- Nonlinear transforms (Jim, Steve, Luis)
- TransformToWorld/TransformFromWorld, integration with slice viewing
- Slicer3, XNAT integration, and desigining XCEDE Web Services (Dan M., Steve, Julien, Dan B.)
- Review and enrich use cases
- Python in Slicer (Dan B., Michael Halle, Steve, Luca)
- Performance Tuning of Fiducials using the EventBroker and other tools (Nicole Aucoin, Alex Yarmarkovich, Steve Pieper, Will Schroeder)
- GUI Tweaking (Wendy, Sebastien) [1]
- fMRI connectivity (Bryce Kim, MIT)
- Atlas free Segmentation (Tammy Riklin-Raviv, MIT)
- New Bias Field Correction in EM (Carlos Sánchez Mendoza, Kilian Pohl - SPL, Brad Davis - Kitware)
- Fluid Mechanics Based DTI Tractography (Nathan Hageman, UCLA)
External Collaborations
- NA-MIC/Projects/Collaboration/UWA-Perth (Adam Wittek)
- NA-MIC/Projects/Collaboration/MRSI Module for Slicer (Bjoern Menze)
- NA-MIC/Projects/Collaboration/NIREP: Non-rigid Image Registration Evaluation (Gary Christensen Group)
- NA-MIC/Projects/Collaboration/Lung Atlas (Gary Christensen Group)
- NA-MIC/Projects/Collaboration/Non-rigid image registration (Gary Christensen Group)
- NA-MIC/Projects/Collaboration/SARP phantom (Keith Gunderson)
- FMA (Protege) links to Slicer (Vish, Mike, Florin, Jim, Steve, Wendy)
- NA-MIC/Projects/External Collaboration/Measuring Alcohol and Stress Interaction
- NA-MIC/Projects/External Collaboration/Slicer3-vmtk Integration (Luca Antiga, Dan Blezek, Mike Halle, Steve Piper)
- NA-MIC/Projects/External Collaboration/Mesh Generation Summer 2008 (Iowa Group)
- NA-MIC/Projects/Collaboration/Carto_scar_BIDMC (Dana Peters Group)
- NA-MIC/Projects/Collaboration/3D Ultrasound Module in Slicer3 (Junichi, Haiying and Noby - SPL, David - Queen's), Danielle - Robarts) )
- NA-MIC/Projects/Collaboration/MGH RadOnc (Greg Sharp, MGH)
- NA-MIC/Projects/External Collaboration/W&M CRTC Non-rigid registration for neurosurgery (Nikos Chrisochoides, Andriy Fedorov, College of William&Mary)
- NA-MIC/Projects/Collaboration/SBIA UPenn (Ragini Verma, Upenn)
Non-Medical Collaborations
- Astronomical Medicine (Harvard IIC: Douglas Alan, Michael Halle)
Attendee List
WE HAVE REACHED CAPACITY. REGISTRATION IS CLOSED. Tkapur 19:42, 6 June 2008 (UTC)