Projects:RegistrationDocumentation:UseCaseInventory

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Formatting

We seek to have all datasets in a single-volume file format, most likely .nii or .nrrd
Once formatting, anonymization and description are complete, listing here will be replaced with a download link. Temporarily listed are links to source databases, where avail.

Case Inventory Brain

• Intra-subject T1-T2-DTI
• DTI baseline to T1 inter-subject with clipped FOV
• Intra-subject PD,T2, T1Gd (MS)
• Scan-rescan intra-subject. No change.

Case Inventory Non-Brain

• PET-CT whole body, 2 timepoints each -- see here
• Breast Cancer MRI: pre- and post-treatment
• Breast Cancer - original data, two time points after some registration and processing
• Prostate image database (intra- and inter-subject registration use cases) http://prostatemrimagedatabase.com/index.html
• knee registration for Simbios project -- http://slicer.spl.harvard.edu/slicerWiki/index.php/Stanford_Simbios_group
• liver MR to CT -- will make available
• kidney MR to CT -- will make available

Case Inventory Non-human

• Vervet Atlas

Self-validation Sets

These are datasets with artificial misalignment, i.e. the perfect alignment is known.

• Dual Echo PD/T2 intra subject different contrast self validation
• Isotropic Brain SPGR T1 with single axis rotation