2010 Winter Project Week SegmentationWizard
Scatter plot of the original FA data through the genu of the corpus callosum of a normal brain.
Regression of FA data; solid line represents the mean and dotted lines the standard deviation.
Key Investigators
- MRN: Jeremy Bockholt, Mark Scully
- BWN: Steve Pieper
Objective
To implement a high level wizard that performs all necessary pre-processing steps and then segments lesion images.
Approach, Plan
1. Verify that all required sub-modules are production ready.
2. Diagram all possible branches with requirements.
3. Use the python scripting system to tie all the different modules together with branching logic.
Progress
Prior to the meeting:
1. Identified a number of modules to incorporate assuming they are production ready (SkullStripping, BiasCorrection, ProbabilisticBiasCorrection, RegisterImages, BrainsConstellation, etc).
2. Implemented a number of other modules that were needed but didn't yet exist (JointIntensityStandardization, LupusLesionSegmenter)
At the meeting:
1. Meet with individuals responsible for relevant modules and identify any issues.
2. Work with Steve Pieper to implement prototype wizard.
3. Get feedback on wizard prototype.
4. Prototype Qt-base Wizard with help from Julien and Jean-Christophe
