SDIWG:Meeting Minutes 20100528
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Contents
NCBC Joint Working Group Meeting
Notes
Friday May 28, 2010: 2:30-3:30 PM EST
Please contact Peter Lyster for information Peter Lyster
SDIWG Meetings Page
Save the date for the next SDWIG tcon/Connect, three months from now: August 20, 2010
Tcon DRAFT Agenda
- Roll Call/Note-taker (Ivo) (5 min)
- Minutes from the last SDIWG tcon February 19, 2010 (5 min)
- Status check on working groups:
- Biositemaps is a technology to address (i) describing, (ii) locating, (ii) querying, (iii) composing or combining, and (iv) navigating/mining biomedical resources. The underlying technology for Biositemaps is the Biomedical Resource Ontology (BRO) V3 and Information Model (IM) which is encapsulated in the Biositemaps Editor. Here is the text of a paper on Biositemaps and BRO that was recently submitted with lead author Jessie Tennenbaum. Also, please try out the new query tool: Resource Discovery System (RDS). You can find the NCBC resources by selecting the "Resource Program" tab and then selecting 'NCBC'.
- (Ivo Dinov) Biositemaps.RDF Extension facilitating resource execution, invocation, input/output and process control, and interoperability.
- Example: CCB Biositemap.RDF
- Original (Standard RDF)
- Extended Biositemap_NCBC_CCB_PL_update021610.rdf
- Extended Biositemap_NCBC_CCB_PL_update021610_ByRef.rdf (scalable by-reference version).
- Example Pipeline workflows (ND_WaveletTransform_WAIR.pipe, ShapeTransform.pipe, ShapeDistance.pipe).
- Pipeline XML Invocation Protocol.
- See also this page.
- iTools/Biositemaps XLS Support (pending validation).
- Example: CCB Biositemap.RDF
- Plans for adoption within and beyond NCBCs: CTSA, NIF, NITRC,IMAG,...
- (Ivo Dinov) Biositemaps.RDF Extension facilitating resource execution, invocation, input/output and process control, and interoperability.
- Scientific Ontologies
- NCBC Driving Biological Projects Interactions and Impact
- NCBC Dissemination and shared calendar: NCBC Dissemination page. The NCBC calendar with NCBC RSS feeds for all centers. Please check it out and provide feedback. (Joy)
- Biositemaps is a technology to address (i) describing, (ii) locating, (ii) querying, (iii) composing or combining, and (iv) navigating/mining biomedical resources. The underlying technology for Biositemaps is the Biomedical Resource Ontology (BRO) V3 and Information Model (IM) which is encapsulated in the Biositemaps Editor. Here is the text of a paper on Biositemaps and BRO that was recently submitted with lead author Jessie Tennenbaum. Also, please try out the new query tool: Resource Discovery System (RDS). You can find the NCBC resources by selecting the "Resource Program" tab and then selecting 'NCBC'.
Minutes
- Note taker: [Suggested order of note takers for future meetings:Dinov (This one), Murphy (Next one), Ku, Schroeder, Floratos, Rubenson, Jags]
- Review of February 19, 2010 Minutes
- Attendees: David Rubenson, Ivo Dinov, Karen Skinner, Susanne Churchill, Gil Omen, Trish Whetzel, Will Schroeder, Zohara Cohen, Peter Lister.
- Peter/Zohara - dissemination efforts / NCBC Calendar; NCBC web-page, DBP interactions (access-stats, maps). How useful/used is the NCBC Calendar? Possible to add NCBC-Cal to Google/Personal Calendars.
- Email and Calendars are now low-maintenance.
- There are about 200 subscribers to this list (NCBC-Cal?)
- Peter: Merger/Symbiosis of DBP and Calendar efforts.
- Peter release of the RDS (Resource Discovery System).
- CTSA/Biositemaps WG continues to make progress. Released RDS V.2?
- Trish: latest efforts on [ BRO]. NCBC/CTSA collab - request from Pitt to include new regulatory branch - continually updated. Need to continue discussions on:
- Update existing Biositemaps.RDF files and account for deprecated RDF constructs. Auto updates?
- Extending the IM (Information model) to allow tool interoperability and comp-tool integration.
Action Items
- TBD
