2014 Summer Project Week

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PW-MIT2014.png opening session
Dates: June 23-27, 2014.

Location: MIT, Cambridge, MA.
opening session


Summary

The last project week was the 19th event in the series. It was held June 23-27, 2014 at MIT. It recorded 81 registered attendees, who worked on 66 projects. These attendees represented 21 academic sites (Brigham and Women’s Hospital, Massachusetts General Hospital, MIT, WPI, Univ of Utah, Univ of Iowa, Univ of Michigan, Univ of North Carolina at Chapel Hill, Queen’s Univ, Univ of Sydney, Univ Magna Graecia of Catanzaro, Old Dominion Univ, Univ of CA San Diego, Johns Hopkins Univ, Stony Brook Univ, Univ of Washington, NIH, Seattle Children's Research Institute, Univ College Cork, Ben-Gurion Univ, Princess Margaret Cancer Centre) and 4 companies (GE Global Research, Kitware, Fraunhofer MEVIS, Isomics Inc).

Agenda

Time Monday, June 23 Tuesday, June 24 Wednesday, June 25 Thursday, June 26 Friday, June 27
Project Presentations NA-MIC Update Day IGT Day Reporting Day
8:30am Breakfast Breakfast Breakfast Breakfast (Stata Building 4th Floor R&D Common Dining Area)
9am-12pm 10-11:30am Breakout Session:
DICOM (Steve Pieper)

Star

11am-12noon Breakout Session: Slicer for users (Ron Kikinis)

9:00-10:30am Tutorial Contest Presentations (Sonia Pujol)

Grier Rooms
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10am-12pm: Breakout Session:
Image-Guided Therapy - Neurosurgery (Alexandra Golby, Tina Kapur)
Star

10am-12pm: Project Progress Updates (Stata Building 4th Floor R&D Common Dining Area)


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12pm Tutorial Contest Winner Announcement (Stata Building 4th Floor R&D Common Dining Area)

12pm-1pm Lunch Lunch Lunch Lunch Lunch boxes; Adjourn by 1:30pm
1pm-5:30pm 1-1:05pm: Ron Kikinis: Welcome

Grier Rooms
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1:05-3:30pm: Project Introductions (all Project Leads) Grier Rooms
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3:30-4:30pm Slicer4 Extensions (Jean-Christophe Fillion-Robin)
Grier Room (Left)

1-3pm: Breakout Session:
QIICR (Andrey Fedorov)

Kiva

1-2:30pm: Breakout Session:
Contours (Adam Rankin, Csaba Pinter)

Kiva

1-3pm: Breakout Session:
Image-Guided Therapy - Prostate Interventions (Clare Tempany, Noby Hata)

Star
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5:30pm Adjourn for the day Adjourn for the day Adjourn for the day Adjourn for the day

Background

Project Week is a hands on activity -- programming using the open source NA-MIC Kit, algorithm design, and clinical application -- that has become one of the major events in the NA-MIC, NCIGT, and NAC calendars. It is held in the summer at MIT, typically the last week of June, and a shorter version is held in Salt Lake City in the winter, typically the second week of January.

Active preparation begins 6-8 weeks prior to the meeting, when a kick-off teleconference is hosted by the NA-MIC Engineering, Dissemination, and Leadership teams, the primary hosts of this event. Invitations to this call are sent to all NA-MIC members, past attendees of the event, as well as any parties who have expressed an interest in working with NA-MIC. The main goal of the kick-off call is to get an idea of which groups/projects will be active at the upcoming event, and to ensure that there is sufficient NA-MIC coverage for all. Subsequent teleconferences allow the hosts to finalize the project teams, consolidate any common components, and identify topics that should be discussed in breakout sessions. In the final days leading upto the meeting, all project teams are asked to fill in a template page on this wiki that describes the objectives and plan of their projects.

The event itself starts off with a short presentation by each project team, driven using their previously created description, and allows all participants to be acquainted with others who are doing similar work. In the rest of the week, about half the time is spent in breakout discussions on topics of common interest of subsets of the attendees, and the other half is spent in project teams, doing hands-on programming, algorithm design, or clinical application of NA-MIC kit tools. The hands-on activities are done in 10-20 small teams of size 3-5, each with a mix of experts in NA-MIC kit software, algorithms, and clinical. To facilitate this work, a large room is setup with several tables, with internet and power access, and each team gathers on a table with their individual laptops, connects to the internet to download their software and data, and is able to work on their projects. On the last day of the event, a closing presentation session is held in which each project team presents a summary of what they accomplished during the week.

A summary of all past NA-MIC Project Events is available here.


Please make sure that you are on the na-mic-project-week mailing list

Projects

Image-Guided Therapy

Huntington's Disease

TBI

Stroke

Cardiac

Chronic Obstructive Pulmonary Disease, Lung, Chest

Head and Neck Cancer / Radiotherapy

QIICR

Feature Extraction

Additional Brain Image Analysis

Slicer4 Extensions

TMJOA RO1 - Collaboration with NAMIC

  • TMJOA (Francois Budin, Beatriz Paniagua, Lucia Cevidanes, Nicole Aucoin, Steve Pieper, Jean-Christophe Fillion-Robin, Alex Yarmarkovich)

Infrastructure

Logistics

  • Dates: June 23-27, 2014.
  • Location: Stata Center / RLE MIT.
  • REGISTRATION: https://www.regonline.com/namic2014summerprojectweek. Please note that as you proceed to the checkout portion of the registration process, RegOnline will offer you a chance to opt into a free trial of ACTIVEAdvantage -- click on "No thanks" in order to finish your Project Week registration.
  • Registration Fee: $300.
  • Hotel: Similar to previous years, no rooms have been blocked in a particular hotel.
  • Room sharing: If interested, add your name to the list: here

Registrants

Do not add your name to this list - it is maintained by the organizers based on your paid registration. (Please click here to register.)

  1. Hugo Aerts, Dana Farber/Harvard, hugo_aerts@dfci.harvard.edu
  2. Nassim Alikacem, Brigham & Women's Hospital, Nassim.Alikacem@gmail.com
  3. Parth Amin, Brigham & Women's Hospital, aminp@wit.edu
  4. Peter Anderson, retired, traneus@verizon.net
  5. Nicole Aucoin, Brigham & Women's Hospital, nicole@bwh.harvard.edu
  6. Eva Breininger, Brigham & Women's Hospital, ebreininger@partners.org
  7. Francois Budin, NIRAL-UNC, fbudin@unc.edu
  8. Saskia Camps, SPL, saskiacamps@gmail.com
  9. Lucia Cevidanes, University of Michigan, luciacev@umich.edu
  10. Laurent Chauvin, SPL, lchauvin@bwh.harvard.edu
  11. Kanglin Chen, Fraunhofer MEVIS, kanglin.chen@mevis.fraunhofer.de
  12. Adrian Dalca, MIT CSAIL, adalca@mit.edu
  13. Alexander Derksen, Fraunhofer MEVIS, alexander.derksen@mevis.fraunhofer.de
  14. Maxime Desplanques, MGH/Politecnico di Milano, maxime.desplanques@cnao.it
  15. Fotis Drakopoulos, Old Dominion University, fdrakopo@gmail.com
  16. Sneha Durgapal, Brigham & Women's Hospital, durgapalsneha@gmail.com
  17. Andriy Fedorov, BWH, fedorov@bwh.harvard.edu
  18. Jean-Christophe Fillion-Robin, Kitware, jchris.fillionr@kitware.com
  19. James Fishbaugh, SCI Institute/University of Utah, jfishbaugh@gmail.com
  20. Jessica Forbes, University of Iowa, jessica-forbes@uiowa.edu
  21. Polina Golland, MIT CSAIL, polina@csail.mit.edu
  22. Jeffrey Grethe, University of CA San Diego, jgrethe@ncmir.ucsd.edu
  23. Rola Harmouche, Brigham & Women's Hospital, rolaharmouche@gmail.com
  24. Nobuhiko Hata, Brigham & Women's Hospital, hata@bwh.harvard.edu
  25. Jayender Jagadeesan, BWH/SPL, jayender@bwh.harvard.edu
  26. Saurabh Jain, Johns Hopkins University, saurabh@cis.jhu.edu
  27. Hans Johnson, University of Iowa, hans-johnson@uiowa.edu
  28. Jayashree Kalpathy-Cramer, MGH, kalpathy@nmr.mgh.harvard.edu
  29. Tina Kapur, BWH/Harvard Medical School, tkapur@bwh.harvard.edu
  30. Ron Kikinis, HMS, kikinis@bwh.harvard.edu
  31. Regina Kim, University of Iowa, eunyoung-kim@uiowa.edu
  32. Franklin King, Queen's University, franklin.king@queensu.ca
  33. Tassilo Klein, SPL/BWH, TJKlein@bwh.harvard.edu
  34. Farukh Kohistani, BWH Radiology, kohistan@bc.edu
  35. Ivan Kolesov, Stony Brook University, ivan.kolesov1@gmail.com
  36. Robin Kouver, BWH/SPL, r.kouver@gmail.com
  37. Andreas Lasso, PerkLab - Queen's University, lasso@queensu.ca
  38. Yangming Li, University of Washington, ymli81@uw.edu
  39. Sidong Liu, SPL/BWH, sliu@bwh.harvard.edu
  40. Siqi Liu, University of Sydney, sliu4512@uni.sydney.edu.au
  41. Bradley Lowekamp, National Institutes of Health, blowekamp@mail.nih.gov
  42. Murat Maga, Seattle Children's Research Institute, maga@uw.edu
  43. Katie Mastrogiacomo, SPL/BWH, kmast@bwh.harvard.edu
  44. Alireza Mehrtash, SPL/BWH, mehrtash@bwh.harvard.edu
  45. Dominik Meier, Brigham & Women's Hospital, meier@bwh.harvard.edu
  46. Jim Miller, GE Research, millerjv@ge.com
  47. Luiz Otavio Murta Junor, SPL/BWH, lmurta@partners.org
  48. Vivek Narayan, NCIGT, narayan.vivek9@gmail.com
  49. Pietro Nardelli, University College Cork, pietro@bwh.harvard.edu
  50. Isaiah Norton, Brigham & Women's Hospital, isaiah.norton@gmail.com
  51. Jorge Onieva, Brigham & Women's Hospital, jorgeonieva@gmail.com
  52. Yangming Ou, MGH, yangming.ou@uphs.upenn.edu
  53. Danielle Pace, MIT CSAIL, dfpace@mit.edu
  54. Keryn Palmer, Brigham & Women's Hospital, kpalmer5@partners.org
  55. Nirav Patel, WPI, napatel@wpi.edu
  56. Tobias Penzkofer, SPL, pt@bwh.harvard.edu
  57. Steve Pieper, Isomics Inc, pieper@isomics.com
  58. Csaba Pinter, Queen's University, csaba.pinter@queensu.ca
  59. Marcel Prastawa, GE Research, marcel.prastawa@ge.com
  60. Somia Pujol, Harvard Medical School, spujol@bwh.harvard.edu
  61. Adam Rankin, Queen's University, rankin@queensu.ca
  62. Aymeric Reshef, Brigham & Women's Hospital, areshef@bwh.harvard.edu
  63. Tammy Riklin Raviv, Ben-Gurion University, rrtammy@ee.bgu.ac.il
  64. Rahul Sastry, BWH/SPL, rahul_sastry@hms.harvard.edu
  65. Peter Savadjiev, Brigham & Women's Hospital, petersv@bwh.harvard.edu
  66. Gregory Sharp, MGH, gcsharp@mgh.harvard.edu
  67. Emylin Sousa, BWH/SPL, emylin.sousa@gmail.com
  68. Ramesh Sridharan, MIT CSAIL, rameshvs@csail.mit.edu
  69. Clare Tempany, Brigham & Women's Hospital, ctempany@bwh.harvard.edu
  70. Matthew Toews, BWH/Harvard Medical School, mt@bwh.harvard.edu
  71. Ethan Ulrich, University of Iowa, ethan-ulrich@uiowa.edu
  72. Tamas Ungi, Queen's University, ungi@queensu.ca
  73. Kevin Wang, Princess Margaret Cancer Centre, kevin.wang@rmp.uhn.ca
  74. David Welch, University of Iowa, david-welch@uiowa.edu
  75. William Wells, Brigham & Women's Hospital, sw@bwh.harvard.edu
  76. Phillip White, BWH/Harvard Medical School, white@bwh.harvard.edu
  77. Alex Yarmarkovich, ISOMICS Inc., alexy@bwh.harvard.edu
  78. Ryan Young, Seattle Children's Research Institute, ryan.young@seattlechildrens.org
  79. Paolo Zaffino, University Magna Graecia of Catanzaro, p.zaffino@unicz.it
  80. Chenxi Zhang, Brigham & Women's Hospital, chenxizhang@fudan.edu.cn
  81. Fan Zhang, University of Sydney, fzha8048@uni.sydney.edu.au
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