Difference between revisions of "2011 Winter Project Week:FinslerTractography"
From NAMIC Wiki
| Line 29: | Line 29: | ||
<h3>Approach, Plan</h3> | <h3>Approach, Plan</h3> | ||
| − | + | The approach is as described in the references: | |
| − | + | * Create anchor tract by minimizing Finsler length using fast sweeping. | |
| − | + | * Volumetric segmentation of fiber bundles starting from anchor tract. | |
| − | |||
</div> | </div> | ||
| Line 39: | Line 38: | ||
<h3>Progress</h3> | <h3>Progress</h3> | ||
| − | + | For the development of the method, we start with: | |
| + | * ITK directional iterators for fast sweeping (complete). | ||
| + | * itk::FastSweeping class (incomplete). | ||
| + | * itk::FinslerTractography class (incomplete). | ||
| Line 49: | Line 51: | ||
==Delivery Mechanism== | ==Delivery Mechanism== | ||
| − | This work will be delivered to the NA-MIC Kit as a | + | This work will be delivered to the NA-MIC Kit as a ITK Module |
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
==References== | ==References== | ||
* Melonakos, J.; Pichon, E.; Angenent, S.; Tannenbaum, A.; "Finsler active contours." IEEE Transactions on Pattern Analysis and Machine Intelligence, 30(3): 412-423, 2008. | * Melonakos, J.; Pichon, E.; Angenent, S.; Tannenbaum, A.; "Finsler active contours." IEEE Transactions on Pattern Analysis and Machine Intelligence, 30(3): 412-423, 2008. | ||
| − | * | + | * Melonakos, J.; Mohan, V.; Niethammer, M.; Smith, K.; Kubicki M.; Tannenbaum, A.; "Finsler tractography for white matter connectivity analysis of the cingulum bundle", Procs. MICCAI 2007, LNCS 4791, pp. 36-43. |
</div> | </div> | ||
Revision as of 15:50, 7 January 2011
Home < 2011 Winter Project Week:FinslerTractography
Instructions for Use of this Template
- Please create a new wiki page with an appropriate title for your project using the convention Project/<Project Name>
- Copy the entire text of this page into the page created above
- Link the created page into the list of projects for the project event
- Delete this section from the created page
- Send an email to tkapur at bwh.harvard.edu if you are stuck
Key Investigators
- LMI: Antonio Tristán-Vega
- LMI: Carl-Fredrik Westin
Objective
We are coding in ITK the method for fiber bindle segmentation by John Melonako, which is currently written only in MatLab.
Approach, Plan
The approach is as described in the references:
- Create anchor tract by minimizing Finsler length using fast sweeping.
- Volumetric segmentation of fiber bundles starting from anchor tract.
Progress
For the development of the method, we start with:
- ITK directional iterators for fast sweeping (complete).
- itk::FastSweeping class (incomplete).
- itk::FinslerTractography class (incomplete).
Delivery Mechanism
This work will be delivered to the NA-MIC Kit as a ITK Module
References
- Melonakos, J.; Pichon, E.; Angenent, S.; Tannenbaum, A.; "Finsler active contours." IEEE Transactions on Pattern Analysis and Machine Intelligence, 30(3): 412-423, 2008.
- Melonakos, J.; Mohan, V.; Niethammer, M.; Smith, K.; Kubicki M.; Tannenbaum, A.; "Finsler tractography for white matter connectivity analysis of the cingulum bundle", Procs. MICCAI 2007, LNCS 4791, pp. 36-43.
