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Back to [[NAMIC_Annual_Reports|NAMIC_Annual_Reports]]<br>
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Back to [[2012_Progress_Report|NAMIC_2012_Progress_Report]]<br>
 +
 
This is where the outline for the 2012 scientific report for NA-MIC goes in.  Ann will provide this outline by 4/1.
 
This is where the outline for the 2012 scientific report for NA-MIC goes in.  Ann will provide this outline by 4/1.
 
=Assignments: Short version=
 
=Assignments: Short version=
Reload the page to reset the table
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Reporting Interval: 7/1/2011- 6/30/2012
 
{|  class="wikitable sortable labelpage labelpagetable" border="1" width="100%" cellpadding="5"
 
{|  class="wikitable sortable labelpage labelpagetable" border="1" width="100%" cellpadding="5"
 
|- style="background:#c2c2c2; color:black" align="left"  
 
|- style="background:#c2c2c2; color:black" align="left"  
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| style="width:60%" | Title, comments  
 
| style="width:60%" | Title, comments  
 
|-
 
|-
| style="background:#ffffdd; color:black" align="center"|OVERVIEW
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| style="background:#ffffdd; color:black" align="center"|1. INTRODUCTION
| style="background:#c4f4af; color:black"|Ron  
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| style="background:#c4f4af; color:black"|Ron
| style="background:#fff6a6; color:black"|Includes a 1-page summary of Research Progress from each TRD for the complete funding cycle (June 1, 2008 - May 31, 2012).
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| style="background:#fff6a6; color:black"|Update Figure 1-1. Geo-anatomical Map of NA-MIC Collaborations, Recent changes and Center (administrative) highlights
 
|-
 
|-
| style="background:#ffffdd; color:black" align="center"|TECHNOLOGY RESEARCH & DEVELOPMENT
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| style="background:#ffffdd; color:black" align="center"|2. [[2012_Progress_Report_HIGHLIGHTS | HIGHLIGHTS]]
| style="background:#c4f4af; color:black"|4 CORES
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| style="background:#c4f4af; color:black"|Will Schroeder, Kitware
| style="background:#fff6a6; color:black"|
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| style="background:#b4e4d4; color:black"|2.1 Algorithms, 2.2 Engineering, 2.3 NA-MIC Kit.
 +
| style="background:#b4e4d4; color:black"|Submitted on 4/23/2012
 
|-
 
|-
| style="background:#ffffdd; color:black" align="center"|TRD 1
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| style="background:#ffffdd; color:black" align="center"|3. [[2012_Progress_Report_IMPACT | IMPACT AND VALUE TO BIOCOMPUTING]]
| style="background:#c4f4af; color:black"|CF
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| style="background:#c4f4af; color:black"|Jim Miller, GE
| style="background:#fff6a6; color:black"|Microstructure Imaging
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| style="background:#b4e4d4; color:black"|3.1 Impact within the Center, 3.2 Impact within NIH-Funded Research, 3.3 National and International Impact
 +
| style="background:#b4e4d4; color:black"|Submitted on 4/20/2012
 
|-
 
|-
| style="background:#ffffdd; color:black" align="center"|TRD 2
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| style="background:#ffffdd; color:black" align="center"|4. RESEARCH PROGRESS SUMMARIES
| style="background:#c4f4af; color:black"|Sandy
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| style="background:#c4f4af; color:black"|
| style="background:#fff6a6; color:black"|Spatio-Temporal Disease Modeling
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| style="background:#fff6a6; color:black"|  
 
|-
 
|-
| style="background:#ffffdd; color:black" align="center"|TRD 3
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| style="background:#ffffdd; color:black" align="center"|4.1 DRIVING BIOLOGICAL PROJECTS
| style="background:#c4f4af; color:black"|Polina
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| style="background:#c4f4af; color:black"|DBP PIs
| style="background:#fff6a6; color:black"|Anatomical Variability
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| style="background:#fff6a6; color:black"|  
 
|-
 
|-
| style="background:#ffffdd; color:black" align="center"|TRD 4
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| style="background:#ffffdd; color:black" align="center"|4.1.1 [[2012_Progress_Report_DBP Atrial_Fibrillation | Atrial Fibrillation]]
| style="background:#c4f4af; color:black"|Steve
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| style="background:#c4f4af; color:black"|Rob MacLeod, Utah
| style="background:#fff6a6; color:black"|Slicer Core
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| style="background:#b4ebd4; color:black"|A. Introduction, B. Research Progress Report, C. Plans for the Coming Year, D. Papers that Acknowledge NA-MIC
 +
| style="background:#b4e4d4; color:black"|Submitted on 4/20/2012
 
|-
 
|-
| style="background:#ffffdd; color:black" align="center"|INFRASTRUCTURE
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| style="background:#ffffdd; color:black" align="center"|4.1.2 [[2012_Progress_Report_DBP Huntington's Disease | Huntington's Disease]]
| style="background:#c4f4af; color:black"|Mike
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| style="background:#c4f4af; color:black"|Hans Johnson, Iowa
| style="background:#fff6a6; color:black"|Atlas Management Tools
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| style="background:#b4e4d4; color:black"|A. Introduction, B. Research Progress Report, C. Plans for the Coming Year, D. Papers that Acknowledge NA-MIC
 +
| style="background:#b4e4d4; color:black"|Submitted on 4/18/2012
 
|-
 
|-
| style="background:#ffffdd; color:black" align="center"|DRIVING BIOMEDICAL PROJECTS
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| style="background:#ffffdd; color:black" align="center"|4.1.3 [[2012_Progress_Report_DBP Adaptive Radiotherapy | Adaptive Radiotherapy for Head and Neck Cancer]]
| style="background:#c4f4af; color:black"|1 per TRD
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| style="background:#c4f4af; color:black"|Gregory C. Sharp, MGH
| style="background:#fff6a6; color:black"|
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| style="background:#b4e4d4; color:black"|A. Introduction, B. Research Progress Report, C. Plans for the Coming Year, D. Papers that Acknowledge NA-MIC
 +
| style="background:#b4e4d4; color:black"|Submitted on 4/17/2012
 
|-
 
|-
| style="background:#ffffdd; color:black" align="center"|DBP 1
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| style="background:#ffffdd; color:black" align="center"|4.1.4 [[2012_Progress_Report_DBP_TBI | Traumatic Brain Injury]]
| style="background:#c4f4af; color:black"|CF
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| style="background:#c4f4af; color:black"|Jack Van Horn, UCLA
| style="background:#fff6a6; color:black"|R01 "Chronic Traumatic Encephalopathy" (Repetitive brain injury), Martha Shenton, Alex Lin, Robert Stern (R01 PI)<br>
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| style="background:#b4e4d4; color:black"|A. Introduction, B. Research Progress Report, C. Plans for the Coming Year, D. Papers that Acknowledge NA-MIC
 +
| style="background:#b4e4d4; color:black"|Submitted on 4/2/2012
 
|-
 
|-
| style="background:#ffffdd; color:black" align="center"|DBP 2
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| style="background:#ffffdd; color:black" align="center"|5. COMPUTER SCIENCE CORE
| style="background:#c4f4af; color:black"|Sandy
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| style="background:#c4f4af; color:black"|Ross Whitaker
| style="background:#fff6a6; color:black"|TMARC, Greg Brown Center Grant UCSD Meth and AIDS<br>
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| style="background:#fff6a6; color:black"|Brief Introduction: Algorithms, Engineering, NA-MIC Kit<br>
 
|-
 
|-
| style="background:#ffffdd; color:black" align="center"|DBP 3
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| style="background:#ffffdd; color:black" align="center"|5.1 Algorithms
| style="background:#c4f4af; color:black"|Polina
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| style="background:#c4f4af; color:black"|Polina Golland, Guido Gerig, Allen Tannenbaum, Martin Styner
| style="background:#fff6a6; color:black"| R01: Software tools for Automated Modeling of WM Fascicles from Diffusion MRI, PI: B. Fischl <br>
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| style="background:#b4e4d4; color:black"|5.1.1 Statistical Models of Anatomy and Pathology, Polina Golland<br>A. Introduction, B. Research Progress Report, C. Plans for the Coming Year, D. Papers that Acknowledge NA-MIC
 +
| style="background:#b4e4d4; color:black"|Submitted on 4/20/2012<br>
 
|-
 
|-
| style="background:#ffffdd; color:black" align="center"|DBP 4
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| style="background:#ffffdd; color:black" align="center"|
| style="background:#c4f4af; color:black"|Steve
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| style="background:#c4f4af; color:black"|
| style="background:#fff6a6; color:black"|NCIGT<br>
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| style="background:#b4e4d4; color:black"|5.1.2. Geometric Correspondence, Guido Gerig<br>A. Introduction, B. Research Progress Report, C. Plans for the Coming Year, D. Papers that Acknowledge NA-MIC<br>
 +
| style="background:#b4e4d4; color:black"|Submitted on 4/20/2012<br>
 
|-
 
|-
| style="background:#ffffdd; color:black" align="center"|COLLABORATION & SERVICE PROJECTS
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| style="background:#ffffdd; color:black" align="center"|
| style="background:#c4f4af; color:black"|2 per TRD
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| style="background:#c4f4af; color:black"|
| style="background:#fff6a6; color:black"|
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| style="background:#b4e4d4; color:black"|5.1.3. User Interactive Segmentation, Allen Tannenbaum<br>A. Introduction, B. Research Progress Report, C. Plans for the Coming Year, D. Papers that Acknowledge NA-MIC
 +
| style="background:#b4e4d4; color:black"|Submitted on 4/20/2012<br><br>
 
|-
 
|-
| style="background:#ffffdd; color:black" align="center"|Collaboration and Service 1
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| style="background:#ffffdd; color:black" align="center"|
| style="background:#c4f4af; color:black"|CF
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| style="background:#c4f4af; color:black"|
| style="background:#fff6a6; color:black"| [http://intrust.spl.harvard.edu/ INTRUST], [http://intrust.spl.harvard.edu/INTRUSTWiki/index.php/Projects/INTRUSTWeb:PTSD-TBI wiki]
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| style="background:#b4e4d4; color:black"|5.1.4. Longitudinal and Time Series Analysis, Martin Styner<br>A. Introduction, B. Research Progress Report, C. Plans for the Coming Year, D. Papers that Acknowledge NA-MIC
 +
| style="background:#b4e4d4; color:black"|Submitted on 4/20/2012<br>
 
|-
 
|-
| style="background:#ffffdd; color:black" align="center"|Collaboration and Service 2
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| style="background:#ffffdd; color:black" align="center"|5.2  
| style="background:#c4f4af; color:black"|CF
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| style="background:#c4f4af; color:black"|Will Schroeder, Steven Aylward, Steve Pieper, Jim Miller
| style="background:#fff6a6; color:black"| [http://www.na-mic.org/ NAMIC]
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| style="background:#b4e4d4; color:black"|5.2.1. [[2012_Progress_Report_Science_Wiki_Version_Engineering | End-user Platform, Steve Pieper]]
 +
| style="background:#b4e4d4; color:black"|Submitted on 4/2/2012
 
|-
 
|-
| style="background:#ffffdd; color:black" align="center"|Collaboration and Service 1
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| style="background:#ffffdd; color:black" align="center"|
| style="background:#c4f4af; color:black"|Sandy
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| style="background:#c4f4af; color:black"|
| style="background:#fff6a6; color:black"|Each TRD PI will identify two C&S projects
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| style="background:#b4e4d4; color:black" align="center"|5.2.2. [[2012_Progress_Report_Science_Wiki_Version_Engineering | Computational Platform, Jim Miller]]
 +
| style="background:#b4e4d4; color:black"|Submitted on 4/20/2012
 
|-
 
|-
| style="background:#ffffdd; color:black" align="center"|Collaboration and Service 2
+
 
| style="background:#c4f4af; color:black"|Sandy
+
| style="background:#ffffdd; color:black" align="center"|
| style="background:#fff6a6; color:black"|Each TRD PI will identify two C&S projects
+
| style="background:#c4f4af; color:black"|
 +
| style="background:#b4e4d4; color:black" align="center"|5.2.3. [[2012_Progress_Report_Science_Wiki_Version_Engineering | Data Management Platform, Dan Marcus]]
 +
| style="background:#b4e4d4; color:black"|Submitted on 4/20/2012
 
|-
 
|-
| style="background:#ffffdd; color:black" align="center"|Collaboration and Service 1
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| style="background:#ffffdd; color:black" align="center"|
| style="background:#c4f4af; color:black"|Polina
+
| style="background:#c4f4af; color:black"|
| style="background:#fff6a6; color:black"|MGH P41, PI: B. Rosen
+
| style="background:#b4e4d4; color:black" align="center"|5.2.4.[[2012_Progress_Report_Science_Wiki_Version_Engineering | Software Process, Stephen R. Aylward ]]
 +
| style="background:#b4e4d4; color:black"|Submitted on 4/20/2012
 
|-
 
|-
| style="background:#ffffdd; color:black" align="center"|Collaboration and Service 2
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| style="background:#ffffdd; color:black" align="center"|5.3 [[2012_Progress_Report_Science_Wiki_Version_Engineering | NA-MIC Kit]]
| style="background:#c4f4af; color:black"|Polina
+
| style="background:#c4f4af; color:black"|Will Schroeder, Steven Aylward, Steve Pieper, Jim Miller
| style="background:#fff6a6; color:black"|NCIGT
+
| style="background:#b4e4d4; color:black"|5.3.1. [[2012_Progress_Report_Science_Wiki_Version_Engineering | Expansion<br>5.3.2. Release<br>]]
 +
| style="background:#b4e4d4; color:black"|Submitted on 4/21/2012
 
|-
 
|-
| style="background:#ffffdd; color:black" align="center"|Collaboration and Service 1
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| style="background:#ffffdd; color:black" align="center"|6. [[2012_Progress_Report_ARRA_Supplement| ARRA SUPPLEMENT]]
| style="background:#c4f4af; color:black"|Steve
+
| style="background:#c4f4af; color:black"|Steve Aylward
| style="background:#fff6a6; color:black"|OCAIRO/SPARKit (Gabor: radio therapy platform)
+
| style="background:#b4e4d4; color:black"|6.1 Summary of Funded Activity
 +
| style="background:#b4e4d4; color:black"|Submitted on 4/2/2012
 
|-
 
|-
| style="background:#ffffdd; color:black" align="center"|Collaboration and Service 2
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| style="background:#ffffdd; color:black" align="center"|7. [[2012_Progress_Report_Outreach| OUTREACH]]
| style="background:#c4f4af; color:black"|Steve
+
| style="background:#c4f4af; color:black"|Sonia Pujol
| style="background:#fff6a6; color:black"|QIN (Andrey/Fiona: prostate analysis)
+
| style="background:#b4e4d4; color:black"|7.1 Summary of Outreach Activities<br>
 +
| style="background:#b4e4d4; color:black"|Submitted on 4/13/2012
 
|-
 
|-
| style="background:#ffffdd; color:black" align="center"|Training
+
| style="background:#ffffdd; color:black" align="center"|8. NA-MIC PUBLICATIONS
| style="background:#c4f4af; color:black"|Sonia
+
| style="background:#c4f4af; color:black"|Marianna
| style="background:#fff6a6; color:black"|This is the training component.
+
| style="background:#fff6a6; color:black"|8.1 Papers that Acknowledge NA-MIC,  8.2. Conference Reports  [[2012_Progress_Report#Dissemination|Go to All Papers List]]
 +
|
 
|-
 
|-
| style="background:#ffffdd; color:black" align="center"|Dissemination
+
| style="background:#ffffdd; color:black" align="center"|9. External Advisory Board (EAB) Report
| style="background:#c4f4af; color:black"|Sonia
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| style="background:#c4f4af; color:black"|Bill Lorensen
| style="background:#fff6a6; color:black"|This is the Dissemination component.
+
| style="background:#fff6a6; color:black"|
|-
+
|
| style="background:#ffffdd; color:black" align="center"|Resources and Facilities
 
| style="background:#c4f4af; color:black"|Mike
 
| style="background:#fff6a6; color:black"|including a description of the new IT architecture
 
|-
 
| style="background:#ffffdd; color:black" align="center"|Adminstration
 
| style="background:#c4f4af; color:black"|Ann
 
| style="background:#fff6a6; color:black"|This is the Administration section overview. Input from Sanjay, Rachana
 
|-
 
| style="background:#ffffdd; color:black" align="center"|Adminstration TRD 1
 
| style="background:#c4f4af; color:black"|CF
 
| style="background:#fff6a6; color:black"|Budget, budget justification, identify key personnel.
 
|-
 
| style="background:#ffffdd; color:black" align="center"|Adminstration TRD 2
 
| style="background:#c4f4af; color:black"|Sandy
 
| style="background:#fff6a6; color:black"|Budget, budget justification, identify key personnel.
 
|-
 
| style="background:#ffffdd; color:black" align="center"|Adminstration TRD 3
 
| style="background:#c4f4af; color:black"|Polina
 
| style="background:#fff6a6; color:black"|Budget, budget justification, identify key personnel.
 
|-
 
| style="background:#ffffdd; color:black" align="center"|Adminstration TRD 4
 
| style="background:#c4f4af; color:black"|Steve
 
| style="background:#fff6a6; color:black"|Budget, budget justification, identify key personnel.
 
|-
 
| style="background:#ffffdd; color:black" align="center"|Adminstration Infrastructure
 
| style="background:#c4f4af; color:black"|Mike
 
| style="background:#fff6a6; color:black"|Budget, budget justification, identify key personnel.
 
|-
 
| style="background:#ffffdd; color:black" align="center"|Adminstration Outreach
 
| style="background:#c4f4af; color:black"|Sanjay
 
| style="background:#fff6a6; color:black"|Budget, budget justification, identify key personnel.
 
|-
 
| style="background:#ffffdd; color:black" align="center"|Organizational Structure and Staff Responsibilities
 
| style="background:#c4f4af; color:black"|Ann
 
| style="background:#fff6a6; color:black"|2 pages
 
|-
 
| style="background:#ffffdd; color:black" align="center"|Resource Operating Procedures
 
| style="background:#c4f4af; color:black"|Ann
 
| style="background:#fff6a6; color:black"|2 pages
 
|-
 
| style="background:#ffffdd; color:black" align="center"|External Advisory Committee
 
| style="background:#c4f4af; color:black"|Ann
 
| style="background:#fff6a6; color:black"|2 pages
 
 
|}
 
|}

Latest revision as of 19:49, 11 April 2023

Home < 2012 Progress Report Science Wiki Version

Back to NAMIC_Annual_Reports
Back to NAMIC_2012_Progress_Report

This is where the outline for the 2012 scientific report for NA-MIC goes in. Ann will provide this outline by 4/1.

Assignments: Short version

Reporting Interval: 7/1/2011- 6/30/2012

Task Owner Title, comments
1. INTRODUCTION Ron Update Figure 1-1. Geo-anatomical Map of NA-MIC Collaborations, Recent changes and Center (administrative) highlights
2. HIGHLIGHTS Will Schroeder, Kitware 2.1 Algorithms, 2.2 Engineering, 2.3 NA-MIC Kit. Submitted on 4/23/2012
3. IMPACT AND VALUE TO BIOCOMPUTING Jim Miller, GE 3.1 Impact within the Center, 3.2 Impact within NIH-Funded Research, 3.3 National and International Impact Submitted on 4/20/2012
4. RESEARCH PROGRESS SUMMARIES
4.1 DRIVING BIOLOGICAL PROJECTS DBP PIs
4.1.1 Atrial Fibrillation Rob MacLeod, Utah A. Introduction, B. Research Progress Report, C. Plans for the Coming Year, D. Papers that Acknowledge NA-MIC Submitted on 4/20/2012
4.1.2 Huntington's Disease Hans Johnson, Iowa A. Introduction, B. Research Progress Report, C. Plans for the Coming Year, D. Papers that Acknowledge NA-MIC Submitted on 4/18/2012
4.1.3 Adaptive Radiotherapy for Head and Neck Cancer Gregory C. Sharp, MGH A. Introduction, B. Research Progress Report, C. Plans for the Coming Year, D. Papers that Acknowledge NA-MIC Submitted on 4/17/2012
4.1.4 Traumatic Brain Injury Jack Van Horn, UCLA A. Introduction, B. Research Progress Report, C. Plans for the Coming Year, D. Papers that Acknowledge NA-MIC Submitted on 4/2/2012
5. COMPUTER SCIENCE CORE Ross Whitaker Brief Introduction: Algorithms, Engineering, NA-MIC Kit
5.1 Algorithms Polina Golland, Guido Gerig, Allen Tannenbaum, Martin Styner 5.1.1 Statistical Models of Anatomy and Pathology, Polina Golland
A. Introduction, B. Research Progress Report, C. Plans for the Coming Year, D. Papers that Acknowledge NA-MIC
Submitted on 4/20/2012
5.1.2. Geometric Correspondence, Guido Gerig
A. Introduction, B. Research Progress Report, C. Plans for the Coming Year, D. Papers that Acknowledge NA-MIC
Submitted on 4/20/2012
5.1.3. User Interactive Segmentation, Allen Tannenbaum
A. Introduction, B. Research Progress Report, C. Plans for the Coming Year, D. Papers that Acknowledge NA-MIC
Submitted on 4/20/2012

5.1.4. Longitudinal and Time Series Analysis, Martin Styner
A. Introduction, B. Research Progress Report, C. Plans for the Coming Year, D. Papers that Acknowledge NA-MIC
Submitted on 4/20/2012
5.2 Will Schroeder, Steven Aylward, Steve Pieper, Jim Miller 5.2.1. End-user Platform, Steve Pieper Submitted on 4/2/2012
5.2.2. Computational Platform, Jim Miller Submitted on 4/20/2012
5.2.3. Data Management Platform, Dan Marcus Submitted on 4/20/2012
5.2.4. Software Process, Stephen R. Aylward Submitted on 4/20/2012
5.3 NA-MIC Kit Will Schroeder, Steven Aylward, Steve Pieper, Jim Miller 5.3.1. Expansion
5.3.2. Release
Submitted on 4/21/2012
6. ARRA SUPPLEMENT Steve Aylward 6.1 Summary of Funded Activity Submitted on 4/2/2012
7. OUTREACH Sonia Pujol 7.1 Summary of Outreach Activities
Submitted on 4/13/2012
8. NA-MIC PUBLICATIONS Marianna 8.1 Papers that Acknowledge NA-MIC, 8.2. Conference Reports Go to All Papers List
9. External Advisory Board (EAB) Report Bill Lorensen