Difference between revisions of "SDIWG:Meeting Minutes 20100528"

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*Status check on '''working groups''':  
 
*Status check on '''working groups''':  
 
**[http://www.biositemaps.org Biositemaps] is a technology to address (i) describing, (ii) locating, (ii) querying, (iii) composing or combining, and (iv) navigating/mining biomedical resources. The underlying technology for Biositemaps is the [http://bioportal.bioontology.org/visualize/40656 Biomedical Resource Ontology (BRO) V3] and [http://biositemaps.bioontology.org/editor/ Information Model (IM)] which is encapsulated in the Biositemaps Editor.  If you are interested, send [mailto:lysterp@mail.nih.gov Peter Lyster] a request for a copy of a paper on Biositemaps and BRO that was recently submitted with lead author Jessie Tennenbaum. Also, please try out the new query tool: [http://www.biositemaps.org/rds Resource Discovery System (RDS)].  You can find the NCBC resources by selecting the "Resource Program" tab and then selecting 'NCBC'.
 
**[http://www.biositemaps.org Biositemaps] is a technology to address (i) describing, (ii) locating, (ii) querying, (iii) composing or combining, and (iv) navigating/mining biomedical resources. The underlying technology for Biositemaps is the [http://bioportal.bioontology.org/visualize/40656 Biomedical Resource Ontology (BRO) V3] and [http://biositemaps.bioontology.org/editor/ Information Model (IM)] which is encapsulated in the Biositemaps Editor.  If you are interested, send [mailto:lysterp@mail.nih.gov Peter Lyster] a request for a copy of a paper on Biositemaps and BRO that was recently submitted with lead author Jessie Tennenbaum. Also, please try out the new query tool: [http://www.biositemaps.org/rds Resource Discovery System (RDS)].  You can find the NCBC resources by selecting the "Resource Program" tab and then selecting 'NCBC'.
*** ([http://www.loni.ucla.edu/~dinov Ivo Dinov]) [http://www.na-mic.org/Wiki/images/9/96/CCB_Supplement_Biositemaps_Pipeline_Report_2010.pdf Biositemaps.RDF Extension facilitating resource execution, invocation, input/output and process control, and interoperability].
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*** ([http://www.loni.ucla.edu/~dinov Ivo Dinov]) [https://na-mic.org/w/images/9/96/CCB_Supplement_Biositemaps_Pipeline_Report_2010.pdf Biositemaps.RDF Extension facilitating resource execution, invocation, input/output and process control, and interoperability].
 
**** Example: CCB Biositemap.RDF
 
**** Example: CCB Biositemap.RDF
 
***** [http://www.loni.ucla.edu/download/iTools/biositemap_NCBC_CCB.rdf Original (Standard RDF)]
 
***** [http://www.loni.ucla.edu/download/iTools/biositemap_NCBC_CCB.rdf Original (Standard RDF)]
***** [http://www.na-mic.org/Wiki/images/e/e8/Biositemap_NCBC_CCB_PL_update021610.rdf Extended Biositemap_NCBC_CCB_PL_update021610.rdf]
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***** [https://na-mic.org/w/images/e/e8/Biositemap_NCBC_CCB_PL_update021610.rdf Extended Biositemap_NCBC_CCB_PL_update021610.rdf]
***** [http://www.na-mic.org/Wiki/images/1/16/Biositemap_NCBC_CCB_PL_update021610_ByRef.rdf Extended Biositemap_NCBC_CCB_PL_update021610_ByRef.rdf] (scalable by-reference version).
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***** [https://na-mic.org/w/images/1/16/Biositemap_NCBC_CCB_PL_update021610_ByRef.rdf Extended Biositemap_NCBC_CCB_PL_update021610_ByRef.rdf] (scalable by-reference version).
**** Example Pipeline workflows ([http://www.na-mic.org/Wiki/images/3/3b/ND_WaveletTransform_WAIR.pipe.txt ND_WaveletTransform_WAIR.pipe], [http://www.na-mic.org/Wiki/images/1/12/ShapeTransform.pipe.txt ShapeTransform.pipe], [http://www.na-mic.org/Wiki/images/d/db/ShapeDistance.pipe.txt ShapeDistance.pipe]).
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**** Example Pipeline workflows ([https://na-mic.org/w/images/3/3b/ND_WaveletTransform_WAIR.pipe.txt ND_WaveletTransform_WAIR.pipe], [https://na-mic.org/w/images/1/12/ShapeTransform.pipe.txt ShapeTransform.pipe], [https://na-mic.org/w/images/d/db/ShapeDistance.pipe.txt ShapeDistance.pipe]).
 
**** [http://pipeline.loni.ucla.edu/support/xml-overview/ Pipeline XML Invocation Protocol].
 
**** [http://pipeline.loni.ucla.edu/support/xml-overview/ Pipeline XML Invocation Protocol].
 
**** [http://www.loni.ucla.edu/twiki/bin/view/CCB/ITools_BiositemapsPipelineWorkflows See also this page].
 
**** [http://www.loni.ucla.edu/twiki/bin/view/CCB/ITools_BiositemapsPipelineWorkflows See also this page].

Latest revision as of 14:27, 10 July 2017

Home < SDIWG:Meeting Minutes 20100528

NCBC Joint Working Group Meeting

Top page of SDIWG web site

Notes

Friday May 28, 2010: 2:30-3:30 PM EST
Please contact Peter Lyster for information Peter Lyster
SDIWG Meetings Page
Save the date for the next SDWIG tcon/Connect, three months from now: August 20, 2010

Tcon DRAFT Agenda


Minutes

  • Note taker: [Suggested order of note takers for future meetings:Dinov (This one), Murphy (Next one), Ku, Schroeder, Floratos, Rubenson, Jags]
  • Review of February 19, 2010 Minutes
  • Attendees: David Rubenson, Ivo Dinov, Karen Skinner, Susanne Churchill, Gil Omenn, Trish Whetzel, Will Schroeder, Zohara Cohen, Peter Lyster, Jeannette Schmidt, Zak Kohane.
  • Peter/Zohara - dissemination efforts / NCBC Calendar; NCBC web-page, DBP interactions (access-stats, maps). How useful/used is the NCBC Calendar? Possible to add NCBC-Cal to Google/Personal Calendars.
    • Email and Calendars are now low-maintenance.
    • There are about 200 subscribers to this list (NCBC-Cal?)
  • Peter: Merger/Symbiosis of DBP and Calendar efforts.
  • Peter release of the RDS (Resource Discovery System).
  • CTSA/Biositemaps WG continues to make progress. Released RDS V.2?
  • Trish: latest efforts on BRO 3.1. NCBC/CTSA collab - request from Pitt to include new regulatory branch - continually updated. Need to continue discussions on:
    • Update existing Biositemaps.RDF files and account for deprecated RDF constructs. Auto updates?
    • Extending the IM (Information model) to allow tool interoperability and comp-tool integration.
    • (Trish) Added announcements to BRO?
    • Send to Beth and Peter comments on RDS (2.0) functionality/operations/features.
    • Karen S: Any stats on RDS usage yet? Peter: Dev team is NCBC/Pitt - none of them are on this call (Peter will check with them).
    • BRO Paper (Jessie/Duke), in review.
  • Peter: RDF extension Pipelining: Ivo suggested drafting some details on hands-on utilization of the Biositemaps.RDF extension enabling the tool interoperability.
  • Peter: Action Items as above.
  • Peter: NCBC Renewal apps (June 15 review; Council Review Sept).
    • Susanne: Inter-interval/intermediate funding?
    • No-cost extension apps (at least until the end of August/September) - check with program officer.
    • Jeannette - assuming Aug/Sept (bridge?) difficult to plan.

Action Items

  • TBD