User contributions
From NAMIC Wiki
- 23:14, 14 June 2010 diff hist +62 Slicer3:Stochastic tractography current
- 23:13, 14 June 2010 diff hist +94 N File:Stochastic tutorial data TutorialContestSummer2010.zip Stochastic Tractography tutorial dataset from June 2010 -Andrew Rausch rauscha@bwh.harvard.edu current
- 23:11, 14 June 2010 diff hist +86 N File:Stochastic Tractography TutorialContestSummer2010.ppt Stochastic Tractography tutorial from June 2010 -Andrew Rausch rauscha@bwh.harvard.edu current
- 23:10, 14 June 2010 diff hist +86 N File:Stochastic Tractography TutorialContestSummer2010.pdf Stochastic Tractography tutorial from June 2010 -Andrew Rausch rauscha@bwh.harvard.edu current
- 23:05, 14 June 2010 diff hist +99 Slicer3:Stochastic tractography
- 23:05, 14 June 2010 diff hist +47 N File:Stochastic Tractography JUN2010.ppt Stochastic Tractography tutorial from June 2010 current
- 23:03, 14 June 2010 diff hist +54 N File:Stochastic Tractography JUN2010.pdf Tutorial for Stochastic Tractography created June 2010 current
- 22:41, 14 June 2010 diff hist +7 Slicer3:Stochastic tractography
- 22:41, 14 June 2010 diff hist -1 Slicer3:Stochastic tractography
- 22:41, 14 June 2010 diff hist +1 Slicer3:Stochastic tractography
- 22:41, 14 June 2010 diff hist +135 Slicer3:Stochastic tractography
- 22:39, 14 June 2010 diff hist +58 N File:Stochastic tutorial data.zip Dataset for the June 2010 Stochastic Tractography tutorial current
- 22:19, 14 June 2010 diff hist +155 N Slicer3:Stochastic tractography Created page with 'You can find the end-to-end tutorial and the sample dataset for running stochastic tractography here. Tutorial (PDF) Tutorial (PowerPoint) Dataset (ZIP)'
- 22:17, 14 June 2010 diff hist +62 Summer 2010 Tutorial Contest →List of submitted tutorials
- 16:24, 5 February 2010 diff hist +310 DBP2:Harvard:Brain Segmentation Roadmap →Module
- 16:05, 5 February 2010 diff hist +94 DBP2:Harvard:Brain Segmentation Roadmap →Module
- 16:03, 5 February 2010 diff hist 0 File:StochasticGUI1.PNG uploaded a new version of "File:StochasticGUI1.PNG" current
- 17:21, 3 February 2010 diff hist +15 Python Stochastic Tractography Tutorial →Key Investigators
- 17:20, 3 February 2010 diff hist -155 Python Stochastic Tractography Tutorial →Key Investigators
- 16:08, 3 February 2010 diff hist 0 Python Stochastic Tractography Tutorial →Tutorial
- 21:00, 6 January 2010 diff hist 0 File:Stochastic June09 1.ppt uploaded a new version of "File:Stochastic June09 1.ppt" current
- 20:53, 6 January 2010 diff hist 0 File:Stochastic Jan09.ppt uploaded a new version of "File:Stochastic Jan09.ppt": This is a roughly complete version. Contact rauscha@bwh.harvard.edu with any errors found current
- 18:19, 6 January 2010 diff hist +3 2010 Winter Project Week Stochastic Tractography current
- 18:19, 6 January 2010 diff hist 0 2010 Winter Project Week Stochastic Tractography
- 18:02, 6 January 2010 diff hist +51 2010 Winter Project Week Stochastic Tractography
- 18:01, 6 January 2010 diff hist 0 N File:Tract cloud.jpg current
- 17:48, 6 January 2010 diff hist 0 File:Stochastic Jan09.ppt uploaded a new version of "File:Stochastic Jan09.ppt"
- 17:18, 6 January 2010 diff hist +111 2010 Winter Project Week Stochastic Tractography
- 00:06, 6 January 2010 diff hist -320 2010 Winter Project Week Stochastic Tractography
- 23:53, 5 January 2010 diff hist -1,017 2010 Winter Project Week Stochastic Tractography →References
- 23:53, 5 January 2010 diff hist -1,104 2010 Winter Project Week Stochastic Tractography →Key Investigators
- 23:27, 5 January 2010 diff hist +54 N File:Stochastic Jan09.ppt Stochastic Tractography module tutorial for Slicer 3.5
- 23:19, 5 January 2010 diff hist -399 2010 Winter Project Week Stochastic Tractography →Instructions for Use of this Template
- 23:19, 5 January 2010 diff hist +3,187 N 2010 Winter Project Week Stochastic Tractography Created page with '__NOTOC__ <gallery> Image:PW-SLC2010.png|Projects List Image:genuFAp.jpg|Scatter plot of the original FA data through the genu of the corpus…'
- 23:17, 5 January 2010 diff hist +117 2010 Winter Project Week DTI Breakout Session
- 20:55, 31 December 2009 diff hist +141 User:Rauscha →Registration current
- 16:50, 22 June 2009 diff hist +104 2009 Summer Project Week Slicer3 registration current
- 16:13, 16 June 2009 diff hist +12 2009 Summer Project Week Slicer3 registration
- 17:40, 10 June 2009 diff hist +91 2009 Summer Project Week →Projects
- 17:38, 10 June 2009 diff hist -6 2009 Summer Project Week Slicer3 registration →Key Investigators
- 17:37, 10 June 2009 diff hist +2 2009 Summer Project Week Slicer3 registration
- 17:37, 10 June 2009 diff hist -1,706 2009 Summer Project Week Slicer3 registration
- 15:26, 10 June 2009 diff hist +3,187 N 2009 Summer Project Week Slicer3 registration Created page with '__NOTOC__ <gallery> Image:PW2009-v3.png|Project Week Main Page Image:genuFAp.jpg|Scatter plot of the original FA data through the genu of the corpus ...'
- 20:04, 5 June 2009 diff hist +18 2009 Summer Project Week →Attendee List
- 01:27, 4 June 2009 diff hist +35 2009 Summer Project Week →Attendee List
- 20:44, 28 May 2009 diff hist +259 Projects:DBP2:Harvard:Registration Documentation:Compare current
- 20:40, 28 May 2009 diff hist +373 Projects:DBP2:Harvard:Registration Documentation:Compare →Bspline
- 20:38, 28 May 2009 diff hist +280 Projects:DBP2:Harvard:Registration Documentation:Compare →Affine
- 20:36, 28 May 2009 diff hist +523 Projects:DBP2:Harvard:Registration Documentation:Compare →Bspline
- 20:15, 28 May 2009 diff hist +818 Projects:DBP2:Harvard:Registration Documentation:Compare →Affine
- 19:49, 28 May 2009 diff hist +82 Projects:DBP2:Harvard:Registration Documentation:Compare →Rigid
- 19:48, 28 May 2009 diff hist +530 Projects:DBP2:Harvard:Registration Documentation:Compare
- 15:08, 28 May 2009 diff hist +1 Projects:DBP2:Harvard:Registration Documentation:Compare →Bspline
- 15:07, 28 May 2009 diff hist +552 Projects:DBP2:Harvard:Registration Documentation:Compare
- 14:56, 28 May 2009 diff hist 0 N File:Case2case target BSPpostAFF FSL Slicer.png current
- 14:47, 28 May 2009 diff hist 0 N File:Case2case target RGD FSL Slicer.png current
- 14:43, 28 May 2009 diff hist 0 N File:Case2case target AFFpostRGD FSL Slicer.png current
- 14:07, 28 May 2009 diff hist 0 File:T2-baseline rig-bspline target FSL slicer.png uploaded a new version of "File:T2-baseline rig-bspline target FSL slicer.png" current
- 19:45, 26 May 2009 diff hist +12 Projects:DBP2:Harvard:Registration Documentation:Compare
- 19:44, 26 May 2009 diff hist +51 Projects:DBP2:Harvard:Registration Documentation:Compare
- 19:43, 26 May 2009 diff hist +55 Projects:DBP2:Harvard:Registration Documentation:Compare
- 19:40, 26 May 2009 diff hist +39 Projects:DBP2:Harvard:Registration Documentation:Compare
- 19:17, 26 May 2009 diff hist +914 Projects:DBP2:Harvard:Registration Documentation:Compare
- 19:00, 26 May 2009 diff hist +151 N File:T2-baseline rig-bspline target FSL slicer.png Registration of T2 structural image to DTI baseline image by rigid then BSpline registration. Shows target, FSL registration, then slicer registration.
- 21:09, 19 May 2009 diff hist +1,385 N Projects:DBP2:Harvard:Registration Documentation:Compare Created page with ''''UNDER CONSTRUCTION''' This page aims to create a concise comparison of registration methods to show the difference in quality of registration between FSL 4.1 and Slicer 3.3. ...'
- 19:25, 19 May 2009 diff hist +126 N File:T2-baseline rigid target FSL slicer.png Target image, rigid registration of t2 to target baseline by FSL flirt (6 dof rigid) and Slicer 3's rigid registration module. current
- 19:15, 19 May 2009 diff hist +134 Projects:DBP2:Harvard:Registration Documentation current
- 15:59, 19 May 2009 diff hist +1 Projects:DBP2:Harvard:Registration Documentation
- 14:31, 18 May 2009 diff hist +16 Projects:DBP2:Harvard:Registration Documentation →Archana's transform
- 14:31, 18 May 2009 diff hist +20 Projects:DBP2:Harvard:Registration Documentation →Archana's transform
- 14:31, 18 May 2009 diff hist +33 Projects:DBP2:Harvard:Registration Documentation →Archana's transform
- 14:30, 18 May 2009 diff hist +567 Projects:DBP2:Harvard:Registration Documentation →Freesurfer parcellation overlay
- 14:27, 18 May 2009 diff hist +72 N File:Archana aseg baseline.png Affine registration of freesurfer aseg labelmap to DTI space by Archana. current
- 15:38, 15 May 2009 diff hist +156 Projects:DBP2:Harvard:Registration Documentation
- 15:15, 15 May 2009 diff hist +17 Projects:DBP2:Harvard:Registration Documentation →Freesurfer parcellation overlay
- 15:15, 15 May 2009 diff hist +2 Projects:DBP2:Harvard:Registration Documentation →Freesurfer parcellation overlay
- 15:14, 15 May 2009 diff hist +182 Projects:DBP2:Harvard:Registration Documentation →Freesurfer parcellation overlay
- 15:10, 15 May 2009 diff hist +961 Projects:DBP2:Harvard:Registration Documentation →Different subject registration
- 15:07, 15 May 2009 diff hist +1 Projects:DBP2:Harvard:Registration Documentation →BSpline
- 15:06, 15 May 2009 diff hist 0 Projects:DBP2:Harvard:Registration Documentation →DTI Baseline to t2 registration
- 21:01, 13 May 2009 diff hist -1 Projects:DBP2:Harvard:Registration Documentation →Rigid-Linear-Bspline
- 21:00, 13 May 2009 diff hist +1 Projects:DBP2:Harvard:Registration Documentation →Demons
- 21:00, 13 May 2009 diff hist +238 Projects:DBP2:Harvard:Registration Documentation →Register Images Module
- 20:58, 13 May 2009 diff hist +328 Projects:DBP2:Harvard:Registration Documentation →Register Images Module
- 20:40, 13 May 2009 diff hist +101 N File:T2-base masked RI-affine.png Registration of structural to DTI baseline by the affine method in the register images module module. current
- 20:38, 13 May 2009 diff hist +279 Projects:DBP2:Harvard:Registration Documentation →Demons
- 20:36, 13 May 2009 diff hist +64 N File:T2-base masked demons.png Registration of structural to DTI baseline by the demons module. current
- 20:35, 13 May 2009 diff hist +14 Projects:DBP2:Harvard:Registration Documentation →Register Images Module
- 20:33, 13 May 2009 diff hist +307 Projects:DBP2:Harvard:Registration Documentation →DTI Baseline to t2 registration
- 20:31, 13 May 2009 diff hist +28 Projects:DBP2:Harvard:Registration Documentation →Slicer modules
- 20:28, 13 May 2009 diff hist +93 N File:T2-base masked RI-rigid.png Registration of structural to DTI baseline by the rigid method in the register images module. current
- 18:47, 13 May 2009 diff hist -1 Projects:DBP2:Harvard:Registration Documentation →Rigid
- 18:47, 13 May 2009 diff hist -16 Projects:DBP2:Harvard:Registration Documentation →Slicer modules
- 18:45, 13 May 2009 diff hist +2,782 Projects:DBP2:Harvard:Registration Documentation →Slicer modules
- 18:44, 13 May 2009 diff hist +116 N File:T2-base masked linear-rigid-bspline.png Structural image registered to corresponding DTI baseline via linear, then rigid, then bspline registration modules. current
- 18:14, 13 May 2009 diff hist +90 N File:T2-base masked bspline.png Structural image registered to corresponding DTI baseline via bspline registration module. current
- 18:03, 13 May 2009 diff hist +89 N File:T2-base masked linear.png Structural image registered to corresponding DTI baseline via linear registration module. current
- 15:46, 13 May 2009 diff hist +114 N File:T2-base masked rigid-linear-affine.png Structural image registered to corresponding DTI baseline via rigid, then linear, then affine registration module. current
- 15:20, 13 May 2009 diff hist +101 N File:T2-base masked rigid-linear.png Structural image registered to corresponding DTI baseline via rigid, then linear registration module. current
- 15:13, 13 May 2009 diff hist +88 N File:T2-base masked rigid.png Structural image registered to corresponding DTI baseline via rigid registration module. current
- 13:42, 13 May 2009 diff hist +89 N File:T2-base masked affine.png Structural image registered to corresponding DTI baseline via affine registration module. current
- 20:40, 12 May 2009 diff hist +40 Projects:DBP2:Harvard:Registration Documentation →Diffeomorphic Demons
- 20:31, 12 May 2009 diff hist -98 Projects:DBP2:Harvard:Registration Documentation →Linear
- 20:28, 12 May 2009 diff hist +1 Projects:DBP2:Harvard:Registration Documentation →Pipeline B-spline
- 20:28, 12 May 2009 diff hist -1 Projects:DBP2:Harvard:Registration Documentation →Pipeline B-spline
- 20:28, 12 May 2009 diff hist +11 Projects:DBP2:Harvard:Registration Documentation →Pipeline B-spline
- 20:28, 12 May 2009 diff hist +35 Projects:DBP2:Harvard:Registration Documentation →Pipeline B-spline
- 20:02, 4 May 2009 diff hist +1,877 Projects:DBP2:Harvard:Registration Documentation →Special case: Anna's data registration
- 19:48, 4 May 2009 diff hist +109 N File:Anna t1-baseline pipe-bspline.png Registration of t1 weighted image to DTI space via the pipeline Bspline method in the register images module. current
- 15:32, 4 May 2009 diff hist +100 N File:Anna t1-baseline linear-aff-bspline.png Registration of t1 weighted image to DTI space via a linear, then affine, then bspline registration. current
- 15:12, 4 May 2009 diff hist +87 N File:Anna t1-baseline demons.png Registration of t1 weighted image to DTI space via a Diffeomorphic Demons registration. current
- 14:52, 4 May 2009 diff hist +79 N File:Anna t1-baseline bspline.png Registration of t1 weighted image to DTI space via a bspline only registration. current
- 14:24, 4 May 2009 diff hist +77 N File:Anna t1 baseline.png These are the two original images, t1 on the left, dwi-baseline on the right. current
- 14:03, 4 May 2009 diff hist +42 Projects:DBP2:Harvard:Registration Documentation
- 20:20, 1 May 2009 diff hist -2,155 Projects:DBP2:Harvard:Registration Documentation →Register Images module
- 20:20, 1 May 2009 diff hist -1,590 Projects:DBP2:Harvard:Registration Documentation →Slicer modules
- 20:16, 1 May 2009 diff hist +1,350 Projects:DBP2:Harvard:Registration Documentation
- 20:03, 1 May 2009 diff hist +142 N File:Aparc-overlay-linear.png Overlay of transformed freesurfer automatic parcellation on DTI image. Transformation obtained via linear registration of t2 -> DTI-baseline. current
- 20:03, 1 May 2009 diff hist +142 N File:Aparc-overlay-affine.png Overlay of transformed freesurfer automatic parcellation on DTI image. Transformation obtained via affine registration of t2 -> DTI-baseline. current
- 19:19, 30 April 2009 diff hist +287 Projects:DBP2:Harvard:Registration Documentation
- 14:15, 27 April 2009 diff hist +94 Projects:DBP2:Harvard:Registration Documentation →Pipe Bspline
- 14:11, 27 April 2009 diff hist +765 Projects:DBP2:Harvard:Registration Documentation →Register Images module
- 14:04, 27 April 2009 diff hist +216 Projects:DBP2:Harvard:Registration Documentation →There and back registration
- 14:01, 27 April 2009 diff hist +120 N File:53-t2 RI pipe bspline.png Image registered to arbitrary t1 and back via the Pipeline bspline registration selection in the Register Images module. current
- 19:30, 24 April 2009 diff hist +737 Projects:DBP2:Harvard:Registration Documentation →There and back registration
- 19:16, 24 April 2009 diff hist +119 N File:53-t2 RI pipe affine.png Image registered to arbitrary t1 and back via the Pipeline affine registration selection in the Register Images module. current
- 18:56, 24 April 2009 diff hist +119 N File:53-t2 RI pipe rigid.png Image registered to arbitrary t1 and back via the Pipeline affine registration selection in the Register Images module. current
- 18:26, 23 April 2009 diff hist +1,236 Projects:DBP2:Harvard:Registration Documentation →Different subject registration
- 14:01, 23 April 2009 diff hist -3 Projects:DBP2:Harvard:Registration Documentation →B-Spline
- 14:01, 23 April 2009 diff hist +2 Projects:DBP2:Harvard:Registration Documentation →B-Spline
- 14:01, 23 April 2009 diff hist +3 Projects:DBP2:Harvard:Registration Documentation →B-Spline
- 14:00, 23 April 2009 diff hist +6 Projects:DBP2:Harvard:Registration Documentation →B-Spline
- 14:00, 23 April 2009 diff hist -7 Projects:DBP2:Harvard:Registration Documentation →B-Spline
- 13:56, 23 April 2009 diff hist +13 Projects:DBP2:Harvard:Registration Documentation →B-Spline
- 13:55, 23 April 2009 diff hist -22 Projects:DBP2:Harvard:Registration Documentation →B-Spline
- 13:52, 23 April 2009 diff hist +3 Projects:DBP2:Harvard:Registration Documentation →B-Spline
- 13:52, 23 April 2009 diff hist +4 Projects:DBP2:Harvard:Registration Documentation →B-Spline
- 13:52, 23 April 2009 diff hist +16 Projects:DBP2:Harvard:Registration Documentation →B-Spline
- 13:51, 23 April 2009 diff hist +5 Projects:DBP2:Harvard:Registration Documentation →Initial
- 13:50, 23 April 2009 diff hist +453 Projects:DBP2:Harvard:Registration Documentation →There and back registration
- 13:39, 23 April 2009 diff hist +259 Projects:DBP2:Harvard:Registration Documentation
- 13:13, 23 April 2009 diff hist +2,021 Projects:DBP2:Harvard:Registration Documentation →Different subject registration
- 20:39, 22 April 2009 diff hist +2,517 Projects:DBP2:Harvard:Registration Documentation
- 20:39, 22 April 2009 diff hist +103 N File:53-31 RI rigid.png Registration of two different subjects t2 images via the rigid selection in the Register Images module. current
- 20:39, 22 April 2009 diff hist +108 N File:53-31 RI pipe rigid.png Registration of two different subjects t2 images via the pipe rigid selection in the Register Images module. current
- 20:38, 22 April 2009 diff hist +110 N File:53-31 RI pipe bspline.png Registration of two different subjects t2 images via the pipe bspline selection in the Register Images module. current
- 20:38, 22 April 2009 diff hist +109 N File:53-31 RI pipe affine.png Registration of two different subjects t2 images via the pipe affine selection in the Register Images module. current
- 20:38, 22 April 2009 diff hist +105 N File:53-31 RI initial.png Registration of two different subjects t2 images via the initial selection in the Register Images module. current
- 20:37, 22 April 2009 diff hist +105 N File:53-31 RI bspline.png Registration of two different subjects t2 images via the Bspline selection in the Register Images module. current
- 20:37, 22 April 2009 diff hist +104 N File:53-31 RI affine.png Registration of two different subjects t2 images via the affine selection in the Register Images module. current
- 20:37, 22 April 2009 diff hist +83 N File:53-31 rigid.png Registration of two different subjects t2 images via the rigid registration module. current
- 20:36, 22 April 2009 diff hist +84 N File:53-31 linear.png Registration of two different subjects t2 images via the linear registration module. current
- 20:36, 22 April 2009 diff hist +98 N File:53-31 demons.png Registration of two different subjects t2 images via the Diffeomorphic Demons registration module. current
- 20:36, 22 April 2009 diff hist +85 N File:53-31 bspline.png Registration of two different subjects t2 images via the Bspline registration module. current
- 20:31, 22 April 2009 diff hist 0 File:53-31 affine.png uploaded a new version of "File:53-31 affine.png": Reverted to version as of 20:30, 22 April 2009 current
- 20:30, 22 April 2009 diff hist 0 File:53-31 affine.png uploaded a new version of "File:53-31 affine.png": Registration of two different subjects t2 images via the Bspline registration module.
- 20:30, 22 April 2009 diff hist +84 N File:53-31 affine.png Registration of two different subjects t2 images via the affine registration module.
- 13:37, 22 April 2009 diff hist +109 N File:Basline-demons-t2.png Registration of a DTI baseline image to corresponding realigned t2 image via the Diffeomorphic Demons module. current
- 20:36, 21 April 2009 diff hist +431 Projects:DBP2:Harvard:Registration Documentation
- 15:13, 21 April 2009 diff hist +129 N File:Baseline-bsp-t2-composite.png Registration of a DTI baseline image to corresponding realigned t2 iamge via the BSpline selection in the Register Images module. current
- 15:11, 21 April 2009 diff hist +70 N File:53-t2 RV init histo.png Image of change in histogram from original t2 to twice deformed image. current
- 15:10, 21 April 2009 diff hist +107 N File:53-t2 RV rigid.png Registration of a t2w image to arbitrary t1 and back via the rigid selection in the Register Images module. current
- 15:10, 21 April 2009 diff hist +109 N File:53-t2 RV initial.png Registration of a t2w image to arbitrary t1 and back via the initial selection in the Register Images module. current
- 15:09, 21 April 2009 diff hist +109 N File:53-t2 RV bspline.png Registration of a t2w image to arbitrary t1 and back via the BSpline selection in the Register Images module. current
- 15:09, 21 April 2009 diff hist +108 N File:53-t2 RV affine.png Registration of a t2w image to arbitrary t1 and back via the affine selection in the Register Images module. current
- 15:08, 21 April 2009 diff hist +83 N File:53-t2 rig.png Registration of a t2w image to arbitrary t1 and back via Rigid Registration module. current
- 15:08, 21 April 2009 diff hist +98 N File:53-t2 demons.png Registration of a t2w image to arbitrary t1 and back via Diffeomorphic Demons Registration module. current
- 15:07, 21 April 2009 diff hist +85 N File:53-t2 Bspline.png Registration of a t2w image to arbitrary t1 and back via BSpline Registration module. current
- 15:07, 21 April 2009 diff hist +84 N File:53-t2 aff.png Registration of a t2w image to arbitrary t1 and back via Affine Registration module. current
- 15:06, 21 April 2009 diff hist +84 N File:52-t2 lin.png Registration of a t2w image to arbitrary t1 and back via Linear Registration module. current
- 14:54, 21 April 2009 diff hist +369 DBP2:Harvard
- 14:49, 21 April 2009 diff hist +3,180 N Projects:DBP2:Harvard:Registration Documentation Created page with '= Registration = Slicer 3 contains a number of different ways to register two images. In this document we will examine the results of these modules on three different cases. The...'
- 14:30, 21 April 2009 diff hist +173 User:Rauscha →Andrew Rausch
- 14:17, 21 April 2009 diff hist +131 N User:Rauscha Created page with '==Andrew Rausch== Works at the Psychiatry Neuroimaging Laboratory at BWH. [http://pnl.bwh.harvard.edu/index.html| The PNL website]'