2011 Winter Project Week:DTIPipeline

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DTI registration/processing pipeline in Slicer3

GUI of DTI registration pipeline

Key Investigators

  • UNC: Francois Budin, Clement Vachet


We are developing a pipeline that takes a DWI or a DTI as an input. It then reorients the image, computes the DTI if the given image is a DWI, computes a scalar image from the DTI and registers this image with a given reference image or atlas.

Approach, Plan

The pipeline will be written as Slicer3 module which creates a Batchmake script that calls tools available in Slicer3.


The command line module for this pipeline has been written. It is composed of a CLI module and some BatchMake scripts calling the tools used in the pipeline. Some tools used in the pipeline are not included in Slicer directly in Slicer and have to be integrated

Delivery Mechanism

This work will be delivered to the NA-MIC Kit as a (please select the appropriate options by noting YES against them below)

  1. ITK Module
  2. Slicer Module
    1. Built-in
    2. Extension -- commandline YES
    3. Extension -- loadable YES
  3. Other (Please specify)