2013 Progress Report/Publications list

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ALL Publications since the beginning of the grant

Peer Review Publications

  1. Jones K.B., Datar M., Ravichandran S., Jin H., Jurrus E., Whitaker R., Capecchi M.R. Toward an Understanding of the Short Bone Phenotype Associated with Multiple Osteochondromas. J Orthop Res. 2013 Apr;31(4):651-7. PMID: 23192691.
  2. Lou Y., Niu T., Jia X., Vela P.A., Zhu L., Tannenbaum A.R. Joint CT/CBCT Deformable Registration and CBCT Enhancement for Cancer Radiotherapy. Med Image Anal. 2013 Apr;17(3):387-400. PMID: 23433756.
  3. Matsui J.T., Vaidya J.G., Johnson H.J., Magnotta V.A., Long J.D., Mills J.A., Lowe M.J., Sakaie K.E., Rao S.M., Smith M.M., Paulsen J.S. Diffusion Weighted Imaging of Prefrontal Cortex in Prodromal Huntington’s Disease. Hum Brain Mapp. 2013 Apr 9. PMID: 23568433.
  4. Paniagua B., Lyall A., Berger J-B., Vachet C., Hamer R.M., Woolson S., Lin W., Gilmore J., Styner M. Lateral Ventricle Morphology Analysis via Mean Latitude Axis. Proc Soc Photo Opt Instrum Eng. 2013 Mar 29;8672. PMID: 23606800. PMCID: PMC3630372.
  5. Egger J., Kapur T., Fedorov A., Pieper S., Miller J.V., Veeraraghavan H., Freisleben B., Golby A.J., Nimsky C., Kikinis R. GBM Volumetry using the 3D Slicer Medical Image Computing Platform. Sci Rep. 2013 Mar 4;3:1364. PMID: 23455483. PMCID: PMC3586703.
  6. Sadeghi N., Prastawa M., Fletcher P.T., Wolff J., Gilmore J.H., Gerig G. Regional Characterization of Longitudinal DT-MRI to Study White Matter Maturation of the Early Developing Brain. Neuroimage. 2013 Mar;68:236-47. PMID: 23235270.
  7. Elison J.T., Paterson S.J., Wolff J.J., Reznick J.S., Sasson N.J., Gu H., Botteron K.N., Dager S.R., Estes A.M., Evans A.C., Gerig G., Hazlett H.C., Schultz R.T., Styner M., Zwaigenbaum L., Piven J. White Matter Microstructure and Atypical Visual Orienting in 7-Month-Olds at Risk for Autism. Am J Psychiatry. 2013 Mar 20. PMID: 23511344.
  8. Verde A., Berger J-B., Gupta A., Farzinfar M., Kaiser A., Chanon V.W., Boettiger C., Johnson H., Matsui J., Sharma A., Goodlett C., Shi Y., Zhu H., Gerig G., Gouttard S., Vachet C., Styner M. UNC-Utah NA-MIC DTI framework: Atlas Based Fiber Tract Analysis with Application to a Study of Nicotine Smoking Addiction. SPIE Medical Imaging, 2013;8669:86692D–86692D–8.
  9. Asami T., Saito Y., Whitford T.J., Makris N., Niznikiewicz M., McCarley R.W., Shenton M.E., Kubicki M. Abnormalities of Middle Longitudinal Fascicle and Disorganization in Patients with Schizophrenia. Schizophr Res. 2013 Feb;143(2-3):253-9. PMID: 23290607.
  10. Farzinfar M., Li Y., Verde A.R., Oguz I., Gerig G., Styner M. DTI Quality Control Assessment via Error Estimation from Monte Carlo Simulations. SPIE Medical Imaging, 2013;8669:86692C–86692C.
  11. Nakhmani A., Tannenbaum A. A New Distance Measure Based on Generalized Image Normalized Cross-Correlation for Robust Video Tracking and Image Recognition. Pattern Recognit Lett. 2013 Feb 1;34(3):315-321. PMID: 23503649.
  12. McClure R.K., Styner M., Maltbie E., Lieberman J.A., Gouttard S., Gerig G., Shi X., Zhu H. Localized Differences in Caudate and Hippocampal Shape are Associated with Schizophrenia but not Antipsychotic Type. Psychiatry Res. 2013 Jan 30;211(1):1-10. PMID: 23142194.
  13. Kim S.H., Fonov V.S., Dietrich C., Vachet C., Hazlett H.C., Smith R.G., Graves M.M., Piven J., Gilmore J.H., Dager S.R., McKinstry R.C., Paterson S., Evans A.C., Collins D.L., Gerig G., Styner M. Adaptive Prior Probability and Spatial Temporal Intensity Change Estimation for Segmentation of The One-Year-Old Human Brain. J Neurosci Methods. 2013 Jan 15;212(1):43-55. PMID: 23032117. PMCID: PMC3513941.
  14. Solowij N., Walterfang M., Lubman D.I., Whittle S., Lorenzetti V., Styner M., Velakoulis D., Pantelis C., Yücel M. Alteration to Hippocampal Shape in Cannabis Users with and without Schizophrenia. Schizophr Res. 2013 Jan;143(1):179-84. PMID: 23201308.
  15. Short S.J., Elison J.T., Goldman B.D., Styner M., Gu H., Connelly M., Maltbie E., Woolson S., Lin W., Gerig G., Reznick J.S., Gilmore J.H. Associations between White Matter Microstructure and Infants' Working Memory. Neuroimage. 2013 Jan 1;64:156-66. PMID: 22989623.
  16. Shi Y., Short S.J., Knickmeyer R.C., Wang J., Coe C.L., Niethammer M., Gilmore J.H., Zhu H., Styner M. Diffusion Tensor Imaging-based Characterization of Brain Neurodevelopment in Primates. Cereb Cortex. 2013 Jan;23(1):36-48. PMID: 22275483. PMCID: PMC3513950.
  17. Skup M., Zhu H., Zhang H. Multiscale Adaptive Marginal Analysis of Longitudinal Neuroimaging Data with Time-varying Covariates. Biometrics. 2012 Dec;68(4):1083-92. PMID: 22551084.
  18. Dougherty M.K., Gu H., Bizzell J., Ramsey S., Gerig G., Perkins D.O., Belger A. Differences in Subcortical Structures in Young Adolescents at Familial Risk for Schizophrenia: A Preliminary Study. Psychiatry Res. 2012 Nov 30;204(2-3):68-74. PMID: 23146250. PMCID: PMC3518556.
  19. Kapur T., Egger J., Damato A., Schmidt E.J., Viswanathan A.N. 3-T MR-guided Brachytherapy for Gynecologic Malignancies. Magn Reson Imaging. 2012 Nov;30(9):1279-90. PMID: 22898699. PMCID: PMC3468320.
  20. Du G., Lewis M.M., Sen S., Wang J., Shaffer M.L., Styner M., Yang Q.X., Huang X. Imaging Nigral Pathology and Clinical Progression in Parkinson's Disease. Mov Disord. 2012 Nov;27(13):1636-43. PMID: 23008179. PMCID: PMC3510346.
  21. Gao Y., Li Z., Lin Z., Zhu L., Tannenbaum A., Bouix S., Wong C.P. Automated Dispersion and Orientation Analysis for Carbon Nanotube Reinforced Polymer Composites. Nanotechnology. 2012 Nov 2;23(43):435706. PMID: 23060008.
  22. Fedorov A., Beichel R., Kalpathy-Cramer J., Finet J., Fillion-Robin J-C., Pujol S., Bauer C., Jennings D., Fennessy F., Sonka M., Buatti J., Aylward S.R., Miller J.V., Pieper S., Kikinis R. 3D Slicer as an Image Computing Platform for the Quantitative Imaging Network. Magn Reson Imaging. 2012 Nov;30(9):1323-41. PMID: 22770690.
  23. Shusharina N., Sharp G. Image Registration using Radial Basis Functions with Adaptive Radius. Med Phys. 2012 Nov;39(11):6542-9. PMID: 23127049. PMCID: PMC3482254.
  24. Irimia A., Wang B., Aylward S.R., Prastawa M.W., Pace D.F., Gerig G., Hovda D.A., Kikinis R., Vespa P.M., Van Horn J.D. Neuroimaging of Structural Pathology and Connectomics in Traumatic Brain Injury: Toward Personalized Outcome Prediction. NeuroImage: Clinical. 2012; 1(1):1-17.
  25. Kikinis Z., Asami T., Bouix S., Finn C.T., Ballinger T., Tworog-Dube E., Kucherlapati R., Kikinis R., Shenton M.E., Kubicki M. Reduced Fractional Anisotropy and Axial Diffusivity in White Matter in 22q11.2 Deletion Syndrome: A Pilot Study. Schizophr Res. 2012 Oct;141(1):35-9. PMID: 22863550. PMCID: PMC3462006.
  26. Vul E., Lashkari D., Hsieh P-J., Golland P., Kanwisher N. Data-Driven Functional Clustering Reveals Dominance of Face, Place, and Body Selectivity in the Ventral Visual Pathway. J Neurophysiol. 2012 Oct;108(8):2306-22. PMID: 22745467.
  27. Kwitt R., Vasconcelos N., Rasiwasia N., Uhl A., Davis B., Häfner M., Wrba F. Endoscopic Image Analysis in Semantic Space. Med Image Anal. 2012 Oct;16(7):1415-22. PMID: 22717411.
  28. Fedorov A., Tuncali K., Fennessy F.M., Tokuda J., Hata N., Wells III W.M., Kikinis R., Tempany C.M. Image Registration for Targeted MRI-guided Transperineal Prostate Biopsy. J Magn Reson Imaging. 2012 Oct;36(4):987-92. PMID: 22645031. PMCID: PMC3434292.
  29. Hua Z., Dunson D.B., Gilmore J.H., Styner M., Zhu H. Semiparametric Bayesian Local Functional Models for Diffusion Tensor Tract Statistics. Neuroimage. 2012 Oct 15;63(1):460-74. PMID: 22732565.
  30. Irimia A., Van Horn J.D. The Structural, Connectomic and Network Covariance of the Human Brain. Neuroimage. 2012 Oct 29;66C:489-499. PMID: 23116816.
  31. Gao Y., Rathi Y., Bouix S., Tannenbaum A. Filtering in the diffeomorphism group and the registration of point sets. IEEE Trans Image Process. 2012 Oct;21(10):4383-96. PMID: 22752129.
  32. Rosenberger G., Nestor P.G., Oh J.S., Levitt J.J., Kindleman G., Bouix S., Fitzsimmons J., Niznikiewicz M., Westin C-F., Kikinis R., McCarley R.W., Shenton M.E., Kubicki M. Anterior Limb of the Internal Capsule in Schizophrenia: a Diffusion Tensor Tractography Study. Brain Imaging Behav. 2012 Sep;6(3):417-25. PMID: 22415192.
  33. Egger J., Tokuda J., Chauvin L., Freisleben B., Nimsky C., Kapur T., Wells III W.M. Integration of the OpenIGTLink Network Protocol for Image-guided Therapy with the Medical Platform MeVisLab. Int J Med Robot. 2012 Sep;8(3):282-90. PMID: 22374845.
  34. Gao Y., Kikinis R., Bouix S., Shenton M., Tannenbaum A. A 3D Interactive Multi-object Segmentation Tool using Local Robust Statistics Driven Active Contours. Med Image Anal. 2012 Aug;16(6):1216-27. PMID: 22831773. PMCID: PMC3443290.
  35. Venkataraman A., Whitford T.J., Westin C-F., Golland P., Kubicki M. Whole Brain Resting State Functional Connectivity Abnormalities in Schizophrenia. Schizophr Res. 2012 Aug;139(1-3):7-12. PMID: 22633528. PMCID: PMC3393792.
  36. Lyall A.E., Woolson S., Wolfe H.M., Goldman B.D., Reznick J.S., Hamer R.M., Lin W., Styner M., Gerig G., Gilmore J.H. Prenatal Isolated Mild Ventriculomegaly is Associated with Persistent Ventricle Enlargement at Ages 1 and 2. Early Hum Dev. 2012 Aug;88(8):691-8. PMID: 22445211. PMCID: PMC3386468.
  37. Geng X., Gouttard S., Sharma A., Gu H., Styner M., Lind W., Gerig G., Gilmore J.H. Quantitative Tract-Based White Matter Development from Birth to Age Two Years. Neuroimage. 2012 Jul 2;61(3):542-57. PMID: 22510254. PMCID: PMC3358435.
  38. Nakhmani A., Tannenbaum A. Self-Crossing Detection and Location for Parametric Active Contours. IEEE Trans Image Process. 2012 Jul;21(7):3150-6. PMID: 22374361.
  39. Makris N., Preti M.G., Asami T., Pelavin P., Campbell B., Papadimitriou G.M., Kaiser J., Baselli G., Westin C-F., Shenton M.E., Kubicki M. Human Middle Longitudinal Fascicle: Variations in Patterns of Anatomical Connections. Brain Struct Funct. 2012 Jul 11. PMID: 22782432.
  40. Hazlett H.C., Gu H., McKinstry R.C., Shaw D.W.W., Botteron K.N., Dager S.R., Styner M., Vachet C., Gerig G., Paterson S.J., Schultz R.T., Estes A.M., Evans A.C., Piven J. Brain Volume Findings in 6-month-old Infants at High Familial Risk for Autism. Am J Psychiatry. 2012 Jun;169(6):601-8. PMID: 22684595.
  41. Guo R., Zhu H., Chow S-M., Ibrahim J.G. Bayesian Lasso for Semiparametric Structural Equation Models. Biometrics. 2012 Jun;68(2):567-77. PMID: 22376150. PMCID: PMC3371320.
  42. Wolff J.J., Gu H., Gerig G., Elison J.T., Styner M., Gouttard S., Botteron K.N., Dager S.R., Dawson G., Estes A.M., Evans A.C., Hazlett H.C., Kostopoulos P., McKinstry R.C., Paterson S.J., Schultz R.T., Zwaigenbaum L., Piven J. Differences in White Matter Fiber Tract Development Present from 6 to 24 Months in Infants with Autism. Am J Psychiatry. 2012 Jun 1;169(6):589-600. PMID: 22362397.
  43. Egger J., Freisleben B., Nimsky C., Kapur T. Template-Cut: A Pattern-Based Segmentation Paradigm. Sci Rep. 2012;2:420:1-8. PMID: 22639728. PMCID: PMC3359527.
  44. Van Horn J.D., Irimia A., Torgerson C.M., Chambers M.C., Kikinis R., Toga A.W. Mapping Connectivity Damage in the Case of Phineas Gage. PLoS ONE 2012. 7(5): e37454. PMID: 22616011. PMCID: PMC3353935.
  45. Li Y., Gilmore J.H., Wang J., Styner M., Lin W., Zhu H. TwinMARM: Two-stage Multiscale Adaptive Regression Methods for Twin Neuroimaging Data. IEEE Trans Med Imaging. 2012 May;31(5):1100-12. PMID: 22287236. PMCID: PMC3380373.
  46. Wählby C., Kamentsky L., Liu Z.H., Riklin-Raviv T., Conery A.L., O'Rourke E.J., Sokolnicki K.L., Visvikis O., Ljosa V., Irazoqui J.E., Golland P., Ruvkun G., Ausubel F.M., Carpenter A.E. An Image Analysis Toolbox for High-throughput C. Elegans Assays. Nat Methods. 2012 Apr 22;9(7):714-6. PMID: 22522656. PMCID: PMC3433711.
  47. Ong D., Walterfang M., Malhi G.S., Styner M., Velakoulis D., Pantelis C. Size and Shape of the Caudate Nucleus in Individuals with Bipolar Affective Disorder. Aust N Z J Psychiatry. 2012 Apr;46(4):340-51. PMID: 22368240. PMCID: PMC3328643.
  48. Irimia A., Chambers M.C., Torgerson C.M., Van Horn J.D. Circular Representation of Human Cortical Networks for Subject and Population-level Connectomic Visualization. Neuroimage. 2012 Apr 2;60(2):1340-51. PMID: 22305988. PMCID: PMC3594415.
  49. Shusharina N., Sharp G.C. Analytic Regularization for Landmark-based Image Registration. Phys Med Biol. 2012 Mar 21;57(6):1477-98. PMID: 22390947.
  50. Gholami B., Bailey J.M., Haddad W.M., Tannenbaum A.R. Clinical Decision Support and Closed-Loop Control for Cardiopulmonary Management and Intensive Care Unit Sedation Using Expert Systems. IEEE Trans Control Syst Technol. 2012 March ; 20(5): 1343–1350. PMCID: PMC3633236.
  51. Irimia A., Chambers M.C., Torgerson C.M., Filippou M., Hovda D.A., Alger J.R., Gerig G., Toga A.W., Vespa P.M., Kikinis R., Van Horn J.D. Patient-tailored Connectomics Visualization for the Assessment of White Matter Atrophy in Traumatic Brain Injury. Front. Neur. 3(10):1-21. PMID: 22363313. PMCID: PMC3275792.
  52. Irimia A., Van Horn J.D., Halgren E. Source Cancellation Profiles of Electroencephalography and Magnetoencephalography. Neuroimage. 2012 Feb 1;59(3):2464-74. PMID: 21959078. PMCID: PMC3254784.
  53. Venkataraman A., Rathi Y., Kubicki M., Westin C-F., Golland P. Joint Modeling of Anatomical and Functional Connectivity for Population Studies. IEEE Trans Med Imaging. 2012 Feb;31(2):164-82. PMID: 21878411.
  54. Gao Y., Corn B., Schifter D., Tannenbaum A. Multiscale 3D shape Representation and Segmentation with Applications to Hippocampal/Caudate Extraction from Brain MRI. Med Image Anal. 2012 Feb;16(2):374-85. PMID: 22119491. PMCID: PMC3267872.
  55. Gadde S., Aucoin N., Grethe J.S., Keator D.B., Marcus D.S., Pieper S. XCEDE: An Extensible Schema for Biomedical Data. Neuroinformatics. 2012 Jan;10(1):19-32. PMID: 21479735.
  56. Maltbie E., Bhatt K., Paniagua B., Smith R.G., Graves M.M., Mosconi M.W., Peterson S., White S., Blocher J., El-Sayed M., Hazlett H.C., Styner M. Asymmetric Bias in User Guided Segmentations of Brain Structures. Neuroimage. 2012 Jan 16;59(2):1315-23. PMID: 21889995. PMCID: PMC3230681.
  57. Schaer M., Cuadra M.B., Schmansky N., Fischl B., Thiran J-P., Eliez S. How to Measure Cortical Folding from MR Images: a Step-by-step Tutorial to Compute Local Gyrification Index. J Vis Exp. 2012 Jan 2;(59):e3417. PMID: 22230945.
  58. Lashkari D., Sridharan R., Vul E., Hsieh P-J., Kanwisher N., Golland P. Search for Patterns of Functional Specificity in the Brain: A Nonparametric Hierarchical Bayesian Model for Group fMRI Data. Neuroimage. 2012 Jan 16;59(2):1348-68. PMID: 21884803.
  59. Lindberg O., Walterfang M., Looi J.C.L., Malykhin N., Ostberg P., Zandbelt B., Styner M., Paniagua B., Velakoulis D., Orndahl E., Wahlund L-O. Hippocampal Shape Analysis in Alzheimer's Disease and Frontotemporal Lobar Degeneration Subtypes. J Alzheimers Dis. 2012 Jan 1;30(2):355-65. PMID: 22414571.
  60. Prastawa M., Awate S.P., Gerig G. Building Spatiotemporal Anatomical Models using Joint 4-D Segmentation, Registration, and Subject-Specific Atlas Estimation. IEEE Workshop on Mathematical Methods in Biomedical Image Analysis 2012; p. 49-56. PMCID: PMC3615562.
  61. Kremen W.S., Panizzon M.S., Neale M.C., Fennema-Notestine C., Prom-Wormley E., Eyler L.T., Stevens A., Franz C.E., Lyons M.J., Grant M.D., Jak A.J., Jernigan T.L., Xian H., Fischl B., Thermenos H.W., Seidman L.J., Tsuang M.T., Dale A.M. Heritability of Brain Ventricle Volume: Converging Evidence from Inconsistent Results. Neurobiol Aging. 2012 Jan;33(1):1-8. PMID: 20363053. PMCID: PMC3221930.
  62. Voineskos A.N., Rajji T.K., Lobaugh N.J., Miranda D., Shenton M.E., Kennedy J.L., Pollock B.G., Mulsant B.H. Age-related Decline in White Matter Tract Integrity and Cognitive Performance: A DTI Tractography and Structural Equation Modeling Study. Neurobiol Aging. 2012 Jan;33(1):21-34. PMID: 20363050. PMCID: PMC2945445.
  63. Fedorov A., Li X., Pohl K.M., Bouix S., Styner M., Addicott M., Wyatt C., Daunais J.B., Wells III W.M., Kikinis R. Atlas-Guided Segmentation of Vervet Monkey Brain MRI. Open Neuroimag J. 2011; 5:186–197. PMID: 22253661. PMCID: PMC3256578.
  64. Looi J.C.L., Macfarlane M.D., Walterfang M., Styner M., Velakoulis D., Lätt J., Van Westen D., Nilsson C. Morphometric Analysis of Subcortical Structures in Progressive Supranuclear Palsy: In vivo Evidence of Neostriatal and Mesencephalic Atrophy. Psychiatry Res. 2011 Nov 30;194(2):163-75. PMID: 21899988. PMCID: PMC3204393.
  65. Irimia A., Chambers M.C., Alger J.R., Filippou M., Prastawa M., Wang B., Hovda D., Gerig G., Toga A.W., Kikinis R., Vespa P.M., Van Horn J.D. Comparison of Acute and Chronic Traumatic Brain Injury using Semi-automatic Multimodal Segmentation of MR Volumes. J Neurotrauma. 2011 Nov;28(11):2287-306. PMID: 21787171. PMCID: PMC3218448.
  66. Koven N.S., Roth R.M., Garlinghouse M.A., Flashman L.A., Saykin A.J. Regional Gray Matter Correlates of Perceived Emotional Intelligence. Soc Cogn Affect Neurosci. 2011 Oct;6(5):582-90. PMID: 20934987. PMCID: PMC3190210.
  67. Lee J., Lankton S., Tannenbaum A. Object Tracking and Target Reacquisition Based on 3-D Range Data for Moving Vehicles. IEEE Trans Image Process. 2011 Oct;20(10):2912-24. PMID: 21486717.
  68. Whitford T.J., Savadjiev P., Kubicki M., O'Donnell L.J., Terry D.P., Bouix S., Westin C-F., Schneiderman J.S., Bobrow L., Rausch A.C., Niznikiewicz M., Nestor P.G., Pantelis C., Wood S.J., McCarley R.W., Shenton M.E. Fiber Geometry in the Corpus Callosum in Schizophrenia: Evidence for Transcallosal Misconnection. Schizophr Res. 2011 Oct;132(1):69-74. PMID: 21831601. PMCID: PMC3172336.
  69. Paniagua B., Cevidanes L., Zhu H., Styner M. Outcome Quantification using SPHARM-PDM Toolbox in Orthognathic Surgery. Int J Comput Assist Radiol Surg. 2011 Sep;6(5):617-26. PMID: 21161693. PMCID: PMC3088776.
  70. Hartley C.A., Fischl B., Phelps E.A. Brain Structure Correlates of Individual Differences in the Acquisition and Inhibition of Conditioned Fear. Cereb Cortex. 2011 Sep;21(9):1954-62. PMID: 21263037. PMCID: PMC3155599.
  71. Melonakos E.D., Shenton M.E., Rathi Y., Terry D.P., Bouix S., Kubicki M. Voxel-based Morphometry (VBM) Studies in Schizophrenia-Can White Matter Changes Be Reliably Detected with VBM?. Psychiatry Res. 2011 Aug 30;193(2):65-70. PMID: 21684124. PMCID: PMC3382976.
  72. Glasser M.F., Van Essen D.C. Mapping Human Cortical Areas in vivo Based on Myelin Content as Revealed by T1- and T2-weighted MRI. J Neurosci. 2011 Aug 10;31(32):11597-616. PMID: 21832190. PMCID: PMC3167149.
  73. Choi H., Kubicki M., Whitford T.J., Alvarado J.L., Terry D.P., Niznikiewicz M., McCarley R.W., Kwon J.S., Shenton M.E. Diffusion Tensor Imaging of Anterior Commissural Fibers in Patients with Schizophrenia. Schizophr Res. 2011 Aug;130(1-3):78-85. PMID: 21561738.
  74. Cohen-Adad J., Benner T., Greve D., Kinkel R.P., Radding A., Fischl B., Rosen B.R., Mainero C. In vivo Evidence of Disseminated Subpial T2* Signal Changes in Multiple Sclerosis at 7 T: A Surface-based Analysis. Neuroimage. 2011 Jul 1;57(1):55-62. PMID: 21511042.
  75. McGann C., Kholmovski E., Blauer J., Vijayakumar S., Haslam T., Cates J., DiBella E., Burgon N., Wilson B., Alexander A., Prastawa M., Daccarett M., Vergara G., Akoum N., Parker D., MacLeod R., Marrouche N. Dark Regions of No-reflow on Late Gadolinium Enhancement Magnetic Resonance Imaging Result in Scar Formation after Atrial Fibrillation Ablation. J Am Coll Cardiol. 2011 Jul 5;58(2):177-85. PMID: 21718914.
  76. Paniagua B., Cevidanes L., Walker D., Zhu H., Guo R., Styner M. Clinical Application of SPHARM-PDM to Quantify Temporomandibular Joint Osteoarthritis. Comput Med Imaging Graph. 2011 Jul;35(5):345-52. PMID: 21185694. PMCID: PMC3083466.
  77. Zhu H., Kong L., Li R., Styner M., Gerig G., Lin W., Gilmore J.H. FADTTS: Functional Analysis of Diffusion Tensor Tract Statistics. Neuroimage. 2011 Jun 1;56(3):1412-25. PMID: 21335092. PMCID: PMC3085665.
  78. Sandhu R., Dambreville S., Yezzi A., Tannenbaum A. A Non-Rigid Kernel Based Framework for 2D3D Pose Estimation and 2D Image Segmentation. IEEE Trans Pattern Anal Mach Intell. 2011 Jun;33(6):1098-115. PMID: 20733218.
  79. Hazlett H.C., Poe M.D., Gerig G., Styner M., Chappell C., Smith R.G., Vachet C., Piven J. Early Brain Overgrowth in Autism Associated with an Increase in Cortical Surface Area Before Age 2 Years. Arch Gen Psychiatry. 2011 May;68(5):467-76. PMID: 21536976. PMCID: PMC3315057.
  80. Langs G., Menze B.H., Lashkari D., Golland P. Detecting Stable Distributed Patterns of Brain Activation using Gini Contrast. Neuroimage. 2011 May 15;56(2):497-507. PMID: 20709176.
  81. Wang Y., Gupta A., Liu Z., Zhang H., Escolar M.L., Gilmore J.H., Gouttard S., Fillard P., Maltbie E., Gerig G., Styner M. DTI Registration in Atlas Based Fiber Analysis of Infantile Krabbe Disease. Neuroimage. 2011 Apr 15;55(4):1577-86. PMID: 21256236. PMCID: PMC3062693.
  82. Walterfang M., Looi J.C.L., Styner M., Walker R.H., Danek A., Niethammer M., Evans A., Kotschet K., Rodrigues G.R., Hughes A., Velakoulis D. Shape Alterations in the Striatum in Chorea-acanthocytosis. Psychiatry Res. 2011 Apr 30;192(1):29-36. PMID: 21377843. PMCID: PMC3324182.
  83. Tokuda J., Mamata H., Gill R.R., Hata N., Kikinis R., Padera R.F., Lenkinski R.E., Sugarbaker D.J., Hatabu H. Impact of Nonrigid Motion Correction Technique on Pixel-wise Pharmacokinetic Analysis of Free-breathing Pulmonary Dynamic Contrast-enhanced MR Imaging. J Magn Reson Imaging. 2011 Apr;33(4):968-73. PMID: 21448965. PMCID: PMC3069717.
  84. Kubicki M., Alvarado J.L., Westin C-F., Tate D.F., Markant D., Terry D.P., Whitford T.J., De Siebenthal J., Bouix S., McCarley R.W., Kikinis R., Shenton M.E. Stochastic Tractography Study of Inferior Frontal Gyrus Anatomical Connectivity in Schizophrenia. Neuroimage. 2011 Apr 15;55(4):1657-64. PMID: 21256966. PMCID: PMC3073419.
  85. Nakhmani A., Tannenbaum A. Particle Filtering with Region-based Matching for Tracking of Partially Occluded and Scaled Targets. SIAM J Imaging Sci. 2011 March 9; 4(1):220–242. PMID: 22506088. PMCID: PMC3324861.
  86. Pohl K.M., Konukoglu E., Novellas S., Ayache N., Fedorov A., Talos I-F., Golby A., Wells III W.M., Kikinis R., Black P.M. A New Metric for Detecting Change in Slowly Evolving Brain Tumors: Validation in Meningioma Patients. Neurosurgery. 2011 Mar;68(1 Suppl Operative):225-33. PMID: 21206318. PMCID: PMC3099129.
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  88. Koerte I., Pelavin P., Kirmess B., Fuchs T., Berweck S., Laubender R.P., Borggraefe I., Schroeder S., Danek A., Rummeny C., Reiser M., Kubicki M., Shenton M.E., Ertl-Wagner B., Heinen F. Anisotropy of Transcallosal Motor Fibres Indicates Functional Impairment in Children with Periventricular Leukomalacia. Dev Med Child Neurol. 2011 Feb;53(2):179-186. PMID: 21121906. PMCID: PMC3057566.
  89. Agar N.Y.R., Golby A.J., Ligon K.L., Norton I., Mohan V., Wiseman J.M., Tannenbaum A., Jolesz F.A. Development of Stereotactic Mass Spectrometry for Brain Tumor Surgery. Neurosurgery. 2011 Feb;68(2):280-89; discussion 290. PMID: 21135749.
  90. Salat D.H., Chen J.J., Van der Kouwe A.J.W., Greve D.N., Fischl B., Rosas H.D. Hippocampal Degeneration is Associated with Temporal and Limbic Gray Matter/White Matter Tissue Contrast in Alzheimer's Disease. Neuroimage. 2011 Feb 1;54(3):1795-802. PMID: 20965261. PMCID: PMC3021138.
  91. Golby A.J., Kindlmann G., Norton I., Yarmarkovich A., Pieper S., Kikinis R. Interactive Diffusion Tensor Tractography Visualization for Neurosurgical Planning. Neurosurgery. 2011 Feb; 68(2):496-505. PMID: 21135713. PMCID: PMC3112275.
  92. Ha L., Prastawa M., Gerig G., Gilmore J.H., Silva C.T., Joshi S. Efficient Probabilistic and Geometric Anatomical Mapping Using Particle Mesh Approximation on GPUs. Int J Biomed Imaging. 2011;2011:572187. PMID: 21941523. PMCID: PMC3166611.
  93. Kim I.T., Tannenbaum A., Tannenbaum R. Anisotropic Conductivity of Magnetic Carbon Nanotubes Embedded in Epoxy Matrices. Carbon N Y. 2011 Jan;49(1):54-61. PMID: 23019381. PMCID: PMC3457806.
  94. Wang X., Grimson W.E.L., Westin C-F. Tractography Segmentation using a Hierarchical Dirichlet Processes Mixture Model. Neuroimage. 2011 Jan 1;54(1):290-302. PMID: 20678578. PMCID: PMC2962770.
  95. Oguro S., Tuncali K., Elhawary H., Morrison P.R., Hata N., Silverman S.G. Image Registration of Pre-procedural MRI and Intra-procedural CT Images to Aid CT-guided Percutaneous Cryoablation of Renal Tumors. Int J Comput Assist Radiol Surg. 2011 Jan;6(1):111-7. PMID: 20499194. PMCID: PMC3050046.
  96. Shenton M.E., Whitford T.J., Kubicki M. Structural Neuroimaging in Schizophrenia: From Methods to Insights to Treatments. Dialogues Clin Neurosci. 2010;12(3):317-32. PMID: 20954428. PMCID: PMC3181976.
  97. Le Faucheur X., Hershkovits E., Tannenbaum R., Tannenbaum A. Non-Parametric Clustering for Studying RNA Conformations. IEEE/ACM Trans Comput Biol Bioinform. 2010 Dec 13. PMID: 21173460.
  98. Mohan V., Sundaramoorthi G., Tannenbaum A. Tubular Surface Segmentation for Extracting Anatomical Structures from Medical Imagery. IEEE Trans Med Imaging. 2010 Dec;29(12):1945-58. PMID: 21118754. PMCID: PMC3103749.
  99. Gerber S., Bremer P-T., Pascucci V., Whitaker R.T. Visual Exploration of High Dimensional Scalar Functions. IEEE Trans Vis Comput Graph. 2010 Nov-Dec;16(6):1271-80. PMID: 20975167. PMCID: PMC3099238.
  100. Kremen W.S., O'Brien R.C., Panizzon M.S., Prom-Wormley E., Eaves L.J., Eisen S.A., Eyler L.T., Hauger R.L., Fennema-Notestine C., Fischl B., Grant M.D., Hellhammer D.H., Jak A.J., Jacobson K.C., Jernigan T.L., Lupien S.J., Lyons M.J., Mendoza S.P., Neale M.C., Seidman L.J., Thermenos H.W., Tsuang M.T., Dale A.M., Franz C.E. Salivary Cortisol and Prefrontal Cortical Thickness in Middle-aged Men: A Twin Study. Neuroimage. 2010 Nov 15;53(3):1093-102. PMID: 20156572.
  101. Elhawary H., Oguro S., Tuncali K., Morrison P.R., Tatli S., Shyn P.B., Silverman S.G., Hata N. Multimodality Non-rigid Image Registration for Planning, Targeting and Monitoring during CT-guided Percutaneous Liver Tumor Cryoablation. Acad Radiol. 2010 Nov;17(11):1334-44. PMID: 20817574. PMCID: PMC2952665.
  102. Kikinis Z., Fallon J.H., Niznikiewicz M., Nestor P., Davidson C., Bobrow L., Pelavin P.E., Fischl B., Yendiki A., McCarley R.W., Kikinis R., Kubicki M., Shenton M.E. Gray Matter Volume Reduction in Rostral Middle Frontal Gyrus in Patients with Chronic Schizophrenia. Schizophr Res. 2010 Nov;123(2-3):153-9. PMID: 20822884. PMCID: PMC2975427.
  103. Gerber S., Tasdizen T., Fletcher P.T., Joshi S., Whitaker R.T. Manifold Modeling for Brain Population Analysis. Med Image Anal. 2010 Oct;14(5):643-53. PMID: 20579930. PMCID: PMC3020141.
  104. Riklin-Raviv T., Van Leemput K., Menze B.H., Wells III W.M., Golland P. Segmentation of Image Ensembles via Latent Atlases. Med Image Anal. 2010 Oct;14(5):654-65. PMID: 20580305. PMCID: PMC2932709.
  105. Ghosh S.S., Kakunoori S., Augustinack J., Nieto-Castanon A., Kovelman I., Gaab N., Christodoulou J.A., Triantafyllou C., Gabrieli J.D.E., Fischl B. Evaluating the Validity of Volume-based and Surface-based Brain Image Registration for Developmental Cognitive Neuroscience Studies in Children 4 to 11 Years of Age. Neuroimage. 2010 Oct 15;53(1):85-93. PMID: 20621657. PMCID: PMC2914629.
  106. Destrieux C., Fischl B., Dale A., Halgren E. Automatic Parcellation of Human Cortical Gyri and Sulci using Standard Anatomical Nomenclature. Neuroimage. 2010 Oct 15;53(1):1-15. PMID: 20547229. PMCID: PMC2937159.
  107. Rueckert D., Hawkes D., Gerig G., Yang G-Z. Editorial. Med Image Anal. 2010 Oct;14(5):631-2 PMID: 20627174.
  108. Sabuncu M.R., Yeo B.T.T., Van Leemput K., Fischl B., Golland P. A Generative Model for Image Segmentation Based on Label Fusion. IEEE Trans Med Imaging. 2010 Oct;29(10):1714-29. PMID: 20562040. PMCID: PMC3268159.
  109. Gao Y., Sandhu R., Fichtinger G., Tannenbaum A.R. A Coupled Global Registration and Segmentation Framework with Application to Magnetic Resonance Prostate Imagery. IEEE Trans Med Imaging. 2010 Oct;29(10):1781-94. PMID: 20529727. PMCID: PMC2988404.
  110. Gilmore J.H., Kang C., Evans D.D., Wolfe H.M., Smith J.K., Lieberman J.A., Lin W., Hamer R.M., Styner M., Gerig G. Prenatal and Neonatal Brain Structure and White Matter Maturation in Children at High Risk for Schizophrenia. Am J Psychiatry. 2010 Sep;167(9):1083-91. PMID: 20516153. PMCID: PMC3105376.
  111. Ou W., Nummenmaa A., Ahveninen J., Belliveau J.W., Hämäläinen M.S., Golland P. Multimodal Functional Imaging using fMRI-informed Regional EEG/MEG Source Estimation. Neuroimage. 2010 Aug 1;52(1):97-108. PMID: 20211266. PMCID: PMC2884199.
  112. Gilmore J.H., Schmitt J.E., Knickmeyer R.C., Smith J.K., Lin W., Styner M., Gerig G., Neale M.C. Genetic and Environmental Contributions to Neonatal Brain Structure: A Twin Study. Hum Brain Mapp. 2010 Aug;31(8):1174-82. PMID: 20063301. PMCID: PMC3109622.
  113. Sandhu R., Dambreville S., Tannenbaum A. Point Set Registration via Particle Filtering and Stochastic Dynamics. IEEE Trans Pattern Anal Mach Intell. 2010 Aug;32(8):1459-73. PMID: 20558877.
  114. Sloan C.D., Shen L., West J.D., Wishart H.A., Flashman L.A., Rabin L.A., Santulli R.B., Guerin S.J., Rhodes C.H., Tsongalis G.J., McAllister T.W., Ahles T.A., Lee S.L., Moore J.H., Saykin A.J. Genetic Pathway-Based Hierarchical Clustering Analysis of Older Adults with Cognitive Complaints and Amnestic Mild Cognitive Impairment using Clinical and Neuroimaging Phenotypes. Am J Med Genet B Neuropsychiatr Genet. 2010 Jul;153B(5):1060-9. PMID: 20468060. PMCID: PMC3021757.
  115. Garlinghouse M.A., Roth R.M., Isquith P.K., Flashman L.A., Saykin A.J. Subjective Rating of Working Memory is Associated with Frontal Lobe Volume in Schizophrenia. Schizophr Res. 2010 Jul;120(1-3):71-5. PMID: 20303715. PMCID: PMC2900432.
  116. Fletcher P.T., Whitaker R.T., Tao R., DuBray M.B., Froehlich A., Ravichandran C., Alexander A.L., Bigler E.D., Lange N., Lainhart J.E. Microstructural Connectivity of the Arcuate Fasciculus in Adolescents with High-Functioning Autism. Neuroimage. 2010 Jul 1;51(3):1117-25. PMID: 20132894. PMCID: PMC2966943.
  117. Rathi Y., Malcolm J.G., Michailovich O.V., Westin C-F., Shenton M.E., Bouix S. Tensor Kernels for Simultaneous Fiber Model Estimation and Tractography. Magn Reson Med. 2010 Jul;64(1):138-48. PMID: 20572129. PMCID: PMC3043656.
  118. Yeo B.T.T., Sabuncu M.R., Vercauteren T., Holt D.J., Amunts K., Zilles K., Golland P., Fischl B. Learning Task-optimal Registration Cost Functions for Localizing Cytoarchitecture and Function in the Cerebral Cortex. IEEE Trans Med Imaging. 2010 Jul;29(7):1424-41. PMID: 20529736.
  119. Whitford T.J., Kubicki M., Schneiderman J.S., O'Donnell L.J., King R., Alvarado J.L., Khan U., Markant D., Nestor P.G., Niznikiewicz M., McCarley R.W., Westin C-F., Shenton M.E. Corpus Callosum Abnormalities and their Association with Psychotic Symptoms in Patients with Schizophrenia. Biol Psychiatry. 2010 Jul 1;68(1):70-7. PMID: 20494336. PMCID: PMC2900500.
  120. Gholami B., Haddad W.M., Tannenbaum A.R. Relevance Vector Machine Learning for Neonate Pain Intensity Assessment Using Digital Imaging. IEEE Trans Biomed Eng. 2010 Jun;57(6):1457-66. PMID: 20172803. PMCID: PMC3103750.
  121. Qiu A., Brown T., Fischl B., Ma J., Miller M.I. Atlas Generation for Subcortical and Ventricular Structures with its Applications in Shape Analysis. IEEE Trans Image Process. 2010 Jun;19(6):1539-47. PMID: 20129863. PMCID: PMC2909363.
  122. Kumbhani S.R., Roth R.M., Kruck C.L., Flashman L.A., McAllister T.W. Nonclinical Obsessive-compulsive Symptoms and Executive Functions in Schizophrenia. J Neuropsychiatry Clin Neurosci. 2010 Summer;22(3):304-12. PMID: 20686137.
  123. Ou W., Wells III W.M., Golland P. Combining Spatial Priors and Anatomical Information for FMRI Detection. Med Image Anal. 2010 Jun;14(3):318-31. PMID: 20362488.
  124. Kim S., Smyth P., Stern H. A Bayesian Mixture Approach to Modeling Spatial Activation Patterns in Multisite fMRI Data. IEEE Trans Med Imaging. 2010 Jun;29(6):1260-74. PMID: 20304727.
  125. Jeong W-K., Beyer J., Hadwiger M., Blue R., Law C., Vazquez-Reina A., Reid R.C., Lichtman J., Pfister H. Ssecrett and NeuroTrace: Interactive Visualization and Analysis Tools for Large-Scale Neuroscience Data Sets. IEEE Comput Graph Appl. 2010 May-Jun;30(3):58-70. PMID: 20650718. PMCID: PMC2909612.
  126. Klein A., Ghosh S.S., Avants B., Yeo B.T.T., Fischl B., Ardekani B., Gee J.C., Mann J.J., Parsey R.V. Evaluation of Volume-Based and Surface-Based Brain Image Registration Methods. Neuroimage. 2010 May 15;51(1):214-20. PMID: 20123029. PMCID: PMC2862732.
  127. Dominitz A., Tannenbaum A. Texture Mapping via Optimal Mass Transport. IEEE Trans Vis Comput Graph. 2010 May-Jun;16(3):419-33. PMID: 20224137. PMCID: PMC2886313.
  128. Zöllei L., Stevens A., Huber K., Kakunoori S., Fischl B. Improved Tractography Alignment Using Combined Volumetric and Surface Registration. Neuroimage. 2010 May 15;51(1):206-13. PMID: 20153833. PMCID: PMC2847021.
  129. Arata J., Kozuka H., Kim H.W., Takesue N., Vladimirov B., Sakaguchi M., Tokuda J., Hata N., Chinzei K., Fujimoto H. Open Core Control Software for Surgical Robots. Int J Comput Assist Radiol Surg. 2010 May;5(3):211-20. PMID: 20033506. PMCID: PMC2925237.
  130. Liu Y., Fedorov A., Kikinis R., Chrisochoides N. Non-Rigid Registration for Brain MRI: Faster and Cheaper. International Journal of Functional Informatics and Personalised Medicine. 2010; 3(1):48-57.
  131. Scully M., Anderson B., Lane T., Gasparovic C., Magnotta V., Sibbitt W., Roldan C., Kikinis R., Bockholt H.J. An Automated Method for Segmenting White Matter Lesions through Multi-level Morphometric Feature Classification with Application to Lupus. Front Hum Neurosci. 2010 Apr 19;4:27. PMID: 20428508. PMCID: PMC2859868.
  132. Lashkari D., Vul E., Kanwisher N., Golland P. Discovering Structure in the Space of FMRI Selectivity Profiles. Neuroimage. 2010 Apr 15;50(3):1085-98. PMID: 20053382. PMCID: PMC2976625.
  133. Agar N.Y.R., Malcolm J.G., Mohan V., Yang H.W., Johnson M.D., Tannenbaum A., Agar J.N., Black P.M. Imaging of Meningioma Progression by Matrix-Assisted Laser Desorption Ionization Time-of-flight Mass Spectrometry. Anal Chem. 2010 Apr 1;82(7):2621-5. PMID: 20196536. PMCID: PMC2852177.
  134. Etgar L., Nakhmani A., Tannenbaum A., Lifshitz E., Tannenbaum R. Trajectory Control of PbSe-gamma-Fe2O3 Nanoplatforms under Viscous Flow and an External Magnetic Field. Nanotechnology. 2010 Apr 30;21(17):175702. PMID: 20368678. PMCID: PMC2882682.
  135. Isaacs E.B., Fischl B.R., Quinn B.T., Chong W.K., Gadian D.G., Lucas A. Impact of Breast Milk on Intelligence Quotient, Brain Size, and White Matter Development. Pediatr Res. 2010 Apr;67(4):357-62. PMID: 20035247. PMCID: PMC2939272.
  136. Rathi Y., Malcolm J., Bouix S., Tannenbaum A. Affine Registration of Label Maps in Label Space. J Computing 2010;2(4):1–11.
  137. Zhu H., Styner M., Tang N., Liu Z., Lin W., Gilmore J.H. FRATS: Functional Regression Analysis of DTI Tract Statistics. IEEE Trans Med Imaging. 2010 Apr;29(4):1039-49. PMID: 20335089. PMCID: PMC2896997.
  138. Dambreville S., Sandhu R., Yezzi A., Tannenbaum A. A Geometric Approach to Joint 2D Region-Based Segmentation and 3D Pose Estimation using a 3D Shape Prior. SIAM J Imaging Sci. 2010 Mar 3;3(1):110-132. PMID: 20613886. PMCID: PMC2897186.
  139. Haber E., Ur Rehman T., Tannenbaum A. An Efficient Numerical Method for the Solution of the L2 Optimal Mass Transfer Problem. SIAM J. Sci. Comput. 2010;32(1):197-211. PMID: 21278828. PMCID: PMC3028539.
  140. Shen L., Saykin A.J., Kim S., Firpi H.A., West J.D., Risacher S.L., McDonald B.C., McHugh T.L., Wishart H.A., Flashman L.A. Comparison of Manual and Automated Determination of Hippocampal Volumes in MCI and Early AD. Brain Imaging Behav. 2010 Mar 1;4(1):86-95. PMID: 20454594. PMCID: PMC2863347.
  141. Kennedy D.N., Haselgrove C., Makris N., Goldin D.M., Lev M.H., Caplan D., Caviness V.S. WebParc: A Tool for Analysis of the Topography and Volume of Stroke from MRI. Med Biol Eng Comput. 2010 Mar;48(3):215-28. PMID: 20077026. PMCID: PMC2848120.
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  143. Walter T., Shattuck D.W., Baldock R., Bastin M.E., Carpenter A.E., Duce S., Ellenberg J., Fraser A., Hamilton N., Pieper S., Ragan M.A., Schneider J.E., Tomancak P., Hériché J-K. Visualization of Image Data from Cells to Organisms. Nature Methods Supplement 2010 March; 7(3):S27-S41. PMID: 20195255.
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  149. Petersen R.C., Aisen P.S., Beckett L.A., Donohue M.C., Gamst A.C., Harvey D.J., Jack C.R., Jagust W.J., Shaw L.M., Toga A.W., Trojanowski J.Q., Weiner M.W. Alzheimer's Disease Neuroimaging Initiative (ADNI): Clinical Characterization. Neurology. 2010 Jan 19;74(3):201-9. PMID: 20042704. PMCID: PMC2809036.
  150. Custo A., Boas D.A., Tsuzuki D., Dan I., Mesquita R., Fischl B., Grimson W.E.L., Wells III W.M. Anatomical Atlas-guided Diffuse Optical Tomography of Brain Activation. Neuroimage. 2010 Jan 1;49(1):561-7. PMID: 19643185. PMCID: PMC2858333.
  151. Vikal S., U-Thainual P., Carrino J.A., Iordachita I., Fischer G.S., Fichtinger G. Perk Station-Percutaneous Surgery Training and Performance Measurement Platform. Comput Med Imaging Graph. 2010 Jan;34(1):19-32. PMID: 19539446. PMCID: PMC2817987.
  152. Khachaturian M.H. A 4-channel 3 Tesla Phased Array Receive Coil for Awake Rhesus Monkey fMRI and Diffusion MRI Experiments. J Biomed Sci Eng. 2010 Jan 1;3(11):1085-1092. PMID: 21243106. PMCID: PMC3019607.
  153. Tokuda J., Fischer G.S., DiMaio S.P., Gobbi D.G., Csoma C., Mewes P.W., Fichtinger G., Tempany C.M., Hata N. Integrated Navigation and Control Software System for MRI-guided Robotic Prostate Interventions. Comput Med Imaging Graph. 2010 Jan;34(1):3-8. PMID: 19699057. PMCID: PMC2815337.
  154. Kremen W.S., Prom-Wormley E., Panizzon M.S., Eyler L.T., Fischl B., Neale M.C., Franz C.E., Lyons M.J., Pacheco J., Perry M.E., Stevens A., Schmitt J.E., Grant M.D., Seidman L.J., Thermenos H.W., Tsuang M.T., Eisen S.A., Dale A.M., Fennema-Notestine C. Genetic and Environmental Influences on the Size of Specific Brain Regions in Midlife: the VETSA MRI Study. Neuroimage. 2010 Jan 15;49(2):1213-23. Erratum in: Neuroimage. 2010 Feb 15;49(4):3499-3502. PMID: 19786105. PMCID: PMC3397915.
  155. García R.I., Ibrahim J.G., Zhu H. Variable Selection for Regression Models with Missing Data. Stat Sin. 2010 Jan;20(1):149-165. PMID: 20336190. PMCID: PMC2844735.
  156. Ur Rehman T., Haber E., Pryor G., Melonakos J., Tannenbaum A. 3D Nonrigid Registration via Optimal Mass Transport on the GPU. Med Image Anal. 2009 Dec;13(6):931-40. PMID: 19135403. PMCID: PMC2811327.
  157. Ziyan U., Sabuncu M.R., Grimson W.E.L., Westin C-F. Consistency Clustering: A Robust Algorithm for Group-wise Registration, Segmentation and Automatic Atlas Construction in Diffusion MRI . Int J Comput Vis 2009; 85(3):279-290. PMID: 20442792. PMCID: PMC2862392.
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  175. Fjell A.M., Westlye L.T., Amlien I., Espeseth T., Reinvang I., Raz N., Agartz I., Salat D.H., Greve D.N., Fischl B., Dale A.M., Walhovd K.B. Minute Effects of Sex on the Aging Brain: A Multisample Magnetic Resonance Imaging Study of Healthy Aging and Alzheimer's Disease. J Neurosci. 2009 Jul 8;29(27):8774-83. PMID: 19587284. PMCID: PMC2782778.
  176. Miller M.I., Priebe C.E., Qiu A., Fischl B., Kolasny A., Brown T., Park Y., Ratnanather J.T., Busa E., Jovicich J., Yu P., Dickerson B.C., Buckner R.L., Morphometry BIRN Collaborative Computational Anatomy: An MRI Morphometry Study of the Human Brain via Diffeomorphic Metric Mapping. Hum Brain Mapp. 2009 Jul;30(7):2132-41. PMID: 18781592. PMCID: PMC2844721.
  177. Paniagua B., Styner M., Macenko M., Pantazis D., Niethammer M. Local Shape Analysis using MANCOVA. The Insight Journal - 2009 July-December
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  182. Kubicki M., Niznikiewicz M., Connor E., Nestor P., Bouix S., Dreusicke M., Kikinis R., McCarley R.W., Shenton M.E. Relationship between White Matter Integrity, Attention, and Memory in Schizophrenia: A Diffusion Tensor Imaging Study. Brain Imaging Behav. 2009 Jun 1;3(2):191-201. PMID: 20556231. PMCID: PMC2885800.
  183. Shen L., Kim S., Saykin A.J. Fourier Method for Large Scale Surface Modeling and Registration. Comput Graph. 2009 Jun 1;33(3):299-311. PMID: 20161536. PMCID: PMC2802331.
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  185. Levitt J.J., Styner M., Niethammer M., Bouix S., Koo M., Voglmaier M.M., Dickey C., Niznikiewicz M.A., Kikinis R., McCarley R.W., Shenton M.E. Shape Abnormalities of Caudate Nucleus in Schizotypal Personality Disorder. Schizophr Res. 2009 May;110(1-3):127-139. PMID: 19328654. PMCID: PMC2756791.
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  188. Postelnicu G., Zöllei L., Fischl B. Combined Volumetric and Surface Registration. IEEE Trans Med Imaging. 2009 Apr;28(4):508-22. PMID: 19273000. PMCID: PMC2761957.
  189. O'Donnell L., Westin C-F., Golby A.J. Tract-Based Morphometry for White Matter Group Analysis. Neuroimage. 2009 Apr 15;45(3):832-44. PMID: 19154790. PMCID: PMC2768362.
  190. Niethammer M., Zach C., Melonakos J., Tannenbaum A. Near-Tubular Fiber Bundle Segmentation for Diffusion Weighted Imaging: Segmentation through Frame Reorientation. Neuroimage. 2009 Mar;45(1 Suppl):S123-32. PMID: 19101640. PMCID: PMC2774769.
  191. Kercher J., Xerogeanes J., Tannenbaum A., Al-Hakim R., Black J.C., Zhao J. Anterior Cruciate Ligament Reconstruction in the Skeletally Immature: An Anatomical Study Utilizing 3-Dimensional Magnetic Resonance Imaging Reconstructions. J Pediatr Orthop. 2009 Mar;29(2):124-9. PMID: 19352236.
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  193. Feczko E., Augustinack J.C., Fischl B., Dickerson B.C. An MRI-based method for measuring volume, thickness and surface area of entorhinal, perirhinal, and posterior parahippocampal cortex. Neurobiol Aging. 2009 Mar;30(3):420-31. PMID: 17850926.
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  198. Wake A.K., Oshinski J.N., Tannenbaum A.R., Giddens D.P. Choice of In Vivo Versus Idealized Velocity Boundary Conditions Influences Physiologically Relevant Flow Patterns in a Subject-Specific Simulation of Flow in the Human Carotid Bifurcation. J Biomech Eng. 2009 Feb;131(2):021013. PMID: 19102572. PMCID: PMC2763622.
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  200. Shi X., Styner M., Lieberman J., Ibrahim J.G., Lin W., Zhu H. Intrinsic Regression Models for Manifold-Valued Data. J Am Stat Assoc. 2009; 5762:192-199. PMID: 19960103. PMCID: PMC2786085.
  201. Lindig T.M., Kumar V., Kikinis R., Pieper S., Schrödl F., Neuhuber W.L., Brehmer A. Spiny Versus Stubby: 3D Reconstruction of Human Myenteric (type I) Neurons. Histochem Cell Biol. 2009 Jan;131(1):1-12. PMID: 18807064. PMCID: PMC2756529.
  202. Fitzsimmons J., Kubicki M., Smith K., Bushell G., San José Estépar R., Westin C-F., Nestor P.G., Niznikiewicz M., Kikinis R., McCarley R.W., Shenton M.E. Diffusion Tractography of the Fornix in Schizophrenia. Schizophr Res 2009 Jan; 107:39–46. PMID: 19046624. PMCID: PMC2646850.
  203. Goodman A.A., Rosolowsky E.W., Borkin M.A., Foster J.B., Halle M., Kauffmann J., Pineda J.E. A Role for Self-gravity at Multiple Length Scales in the Process of Star Formation. Nature. 2009 Jan 1;457(7225):63-6. PMID: 19122636.
  204. Kubicki M., Styner M., Bouix S., Gerig G., Markant D., Smith K., Kikinis R., McCarley R.W., Shenton M.E. Reduced Interhemispheric Connectivity in Schizophrenia- Tractography Based Segmentation of the Corpus Callosum. Schizophr Res. 2008 Dec;106(2-3):125-31. PMID: 18829262. PMCID: PMC2630535.
  205. Xia T., Baird C., Jallo G., Hayes K., Nakajima N., Hata N., Kazanzides P. An Integrated System for Planning, Navigation and Robotic Assistance for Skull Base Surgery. Int J Med Robot. 2008 Dec;4(4):321-30. PMID: 18803337. PMCID: PMC2770335.
  206. Michailovich O.V., Tannenbaum A. Segmentation of Tracking Sequences using Dynamically Updated Adaptive Learning. IEEE Trans Image Process. 2008 Dec;17(12):2403-12. PMID: 19004712. PMCID: PMC2796576.
  207. Makris N., Angelone L., Tulloch S., Sorg S., Kaiser J., Kennedy D., Bonmassar G. MRI-based Anatomical Model of the Human Head for Specific Absorption Rate Mapping. Med Biol Eng Comput. 2008 Dec;46(12):1239-51. PMID: 18985401. PMCID: PMC2828153.
  208. Khachaturian M.H., Arsenault J., Ekstrom L.B., Tuch D.S., Vanduffel W. Focal Reversible Deactivation of Cerebral Metabolism Affects Water Diffusion. Magn Reson Med. 2008 Nov;60(5):1178-89. PMID: 18958855. PMCID: PMC2784882.
  209. Hinds O.P., Polimeni J.R., Rajendran N., Balasubramanian M., Wald L.L., Augustinack J.C., Wiggins G., Rosas H.D., Fischl B., Schwartz E.L. The Intrinsic Shape of Human and Macaque Primary Visual Cortex. Cereb Cortex. 2008 Nov;18(11):2586-95. PMID: 18308709. PMCID: PMC2733317.
  210. Lankton S., Tannenbaum A. Localizing Region-Based Active Contours. IEEE Trans Image Process. 2008 Nov;17(11):2029-39. PMID: 18854247. PMCID: PMC2796112.
  211. Yeo B.T.T., Sabuncu M.R., Desikan R., Fischl B., Golland P. Effects of Registration Regularization and Atlas Sharpness on Segmentation Accuracy. Med Image Anal. 2008 Oct;12(5):603-15. PMID: 18667352. PMCID: PMC2615799.
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  213. Dambreville S., Rathi Y., Tannenbaum A. A Framework for Image Segmentation using Shape Models and Kernel Space Shape Priors. IEEE Trans Pattern Anal Mach Intell. 2008 Aug;30(8):1385-99. PMID: 18566493. PMCID: PMC2800082.
  214. Fischl B., Rajendran N., Busa E., Augustinack J., Hinds O., Yeo B.T.T., Mohlberg H., Amunts K., Zilles K. Cortical Folding Patterns and Predicting Cytoarchitecture. Cereb Cortex. 2008 Aug;18(8):1973-80. PMID: 18079129. PMCID: PMC2474454.
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  216. Niethammer M., Vela P.A., Tannenbaum A. Geometric Observers for Dynamically Evolving Curves. IEEE Trans Pattern Anal Mach Intell. 2008 Jun;30(6):1093-108. PMID: 18421113. PMCID: PMC2796582.
  217. Pienaar R., Fischl B., Caviness V., Makris N., Grant P.E. A Methotology for Analyzing Curvature in the developing brain from preterm to Adult. Int J Imaging Syst Technol. 2008 Jun 1;18(1):42-68. PMID: 19936261. PMCID: PMC2779548.
  218. Hershkovits E., Tannenbaum A., Tannenbaum R. Adsorption of Block Copolymers from Selective Solvents on Curved Surfaces. Macromolecules. 2008 May; 41(9): 3190–3198. PMID: 20976029. PMCID: PMC2957843.
  219. Hershkovits E., Tannenbaum A., Tannenbaum R. Scaling Aspects of Block Co-Polymer Adsorption on Curved Surfaces from Nonselective Solvents. J Phys Chem B. 2008 May 1;112(17):5317-26. PMID: 18399678. PMCID: PMC2791366.
  220. Dinov I.D., Rubin D., Lorensen W.E., Dugan J., Ma J., Murphy S., Kirschner B., Bug W., Sherman M., Floratos A., Kennedy D., Jagadish H.V., Schmidt J., Athey B., Califano A., Musen M., Altman R., Kikinis R., Kohane I., Delp S., Parker D.S., Toga A.W. iTools: A Framework for Classification, Categorization and Integration of Computational Biology Resources. PLoS ONE 2008 May; 3(5): e2265. PMID: 18509477. PMCID: PMC2386255.
  221. Unal G., Slabaugh G., Kakadiaris I.A., Tannenbaum A. Introduction to the Special Section on Computer Vision for Intravascular and Intracardiac Imaging. IEEE Trans Inf Technol Biomed. 2008 May;12(3):273-6. PMID: 18693494.
  222. Van der Kouwe A.J.W., Benner T., Salat D.H., Fischl B. Brain Morphometry with Multiecho MPRAGE. Neuroimage. 2008 Apr 1;40(2):559-69. PMID: 18242102. PMCID: PMC2408694.
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  229. Yeo B.T.T., Ou W., Golland P. On the Construction of Invertible Filter Banks on the 2-Sphere. IEEE Trans Image Process. 2008 Mar;17(3):283-300. PMID: 18270119. PMCID: PMC2800042.
  230. Michailovich O.V., Tannenbaum A. On Approximation of Smooth Functions from Samples of Partial Derivatives with Application to Phase Unwrapping. IEEE Trans Signal Process. 2008 Feb 1;88(2):358-374. PMID: 20046803. PMCID: PMC2799304.
  231. Hinds O.P., Rajendran N., Polimeni J.R., Augustinack J.C., Wiggins G., Wald L.L., Diana Rosas H., Potthast A., Schwartz E.L., Fischl B. Accurate Prediction of V1 Location from Cortical Folds in a Surface Coordinate System. Neuroimage. 2008 Feb 15;39(4):1585-99. PMID: 18055222. PMCID: PMC2258215.
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  245. Taylor W.D., Macfall J.R., Gerig G., Krishnan R.R. Structural Integrity of the Uncinate Fasciculus in Geriatric Depression: Relationship with Age of Onset. Neuropsychiatr Dis Treat. 2007 Oct;3(5):669-74. PMID: 19300596. PMCID: PMC2656303.
  246. Hershkovits E., Tannenbaum A., Tannenbaum R. Polymer Adsorption on Curved Surfaces: A Geometric Approach. J Chem Phys. 2007;111(33):12369-12375.
  247. DiMaio S.P., Kapur T., Cleary K., Aylward S.R., Kazanzides P., Vosburgh K.G., Ellis R., Duncan J., Farahani K., Lemke H., Peters T., Lorensen W.E., Gobbi D.G., Haller J., Clarke L., Pizer S., Taylor R., Galloway Jr R., Fichtinger G., Hata N., Lawson K., Tempany C.M., Kikinis R., Jolesz F.A. Challenges in Image-guided Therapy System Design. NeuroImage 2007; 37(Suppl 1):S144-S151. PMID: 17644360.
  248. Georgiou T., Michailovich O.V., Rathi Y., Malcolm J., Tannenbaum A. Distribution Metrics and Image Segmentation. Linear Algebra Appl. 2007 Sep 1;425(2-3):663-672. PMID: 18769529. PMCID: PMC2387279.
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  253. Dauguet J., Peled S., Berezovskii V., Delzescaux T., Warfield S.K., Born R., Westin C-F. Comparison of Fiber Tracts Derived from In-vivo DTI Tractography with 3D Histological Neural Tract Tracer Reconstruction on a Macaque Brain. Neuroimage. 2007 Aug 15;37(2):530-8. PMID: 17604650.
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  257. Fletcher P.T., Joshi S. Riemannian geometry for the statistical analysis. Signal Processing 2007; 87:250-262
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  259. Onitsuka T., McCarley R.W., Kuroki N., Dickey C.C., Kubicki M., Demeo S.S., Frumin M., Kikinis R., Jolesz F.A., Shenton M.E. Occipital Lobe Gray Matter Volume in Male Patients with Chronic Schizophrenia: A Quantitative MRI Study. Schizophr Res. 2007 May;92(1-3):197-206. PMID: 17350226. PMCID: PMC2396445.
  260. Han X., Fischl B. Atlas Renormalization for Improved Brain MR Image Segmentation Across Scanner Platforms. IEEE Trans Med Imaging. 2007 Apr;26(4):479-86. PMID: 17427735.
  261. Nain D., Haker S., Bobick A., Tannenbaum A. Multiscale 3D Shape Representation and Segmentation using Spherical Wavelets. IEEE Trans Med Imaging. 2007 Apr;26(4):598-618. PMID: 17427745.
  262. Yu P., Grant P.E., Qi Y., Han X., Ségonne F., Pienaar R., Busa E., Pacheco J., Makris N., Buckner R., Golland P., Fischl B. Cortical Surface Shape Analysis Based on Spherical Wavelets. IEEE Trans Med Imaging. 2007 Apr;26(4):582-97. PMID: 17427744.
  263. Brem M.H., Pauser J., Yoshioka H., Brenning A., Stratmann J., Hennig F.F., Kikinis R., Duryea J., Winalski C.S., Lang P. Longitudinal in vivo Reproducibility of Cartilage Volume and Surface in Osteoarthritis of the Knee. Skeletal Radiol. 2007 Apr;36(4):315-20. PMID: 17219231.
  264. Segonne F., Pacheco J., Fischl B. Geometrically Accurate Topology-correction of Cortical Surfaces using Nonseparating Loops. IEEE Trans Med Imaging. 2007 Apr;26(4):518-29. PMID: 17427739.
  265. DaSilva A.F.M., Granziera C., Tuch D.S., Snyder J., Vincent M., Hadjikhani N. Interictal Alterations of the Trigeminal Somatosensory Pathway and Periaqueductal Gray Matter in Migraine. Neuroreport. 2007 Mar 5;18(4):301-5. PMID: 17435592.
  266. Nakamura M., Nestor P.G., McCarley R.W., Levitt J.J., Hsu L., Kawashima T., Niznikiewicz M., Shenton M.E. Altered Orbitofrontal Sulcogyral Pattern in Schizophrenia. Brain. 2007 Mar;130(Pt 3):693-707. PMID: 17347256. PMCID: PMC2768130.
  267. Ahles T.A., Saykin A.J. Candidate Mechanisms for Chemotherapy-induced Cognitive Changes. Nat Rev Cancer. 2007 Mar;7(3):192-201. PMID: 17318212. PMCID: PMC3329763.
  268. Al-Hakim R., Nain D., Levitt J., Shenton M.E., Tannenbaum A. Semi-Automatic Parcellation of the Corpus Striatum. SPIE, Vol. 6512, 651236 (2007)
  269. Gurrera R.J., Nakamura M., Kubicki M., Dickey C.C., Niznikiewicz M.A., Voglmaier M.M., McCarley R.W., Shenton M.E., Westin C-F., Maier S.E., Seidman L.J. The Uncinate Fasciculus and Extraversion in Schizotypal Personality Disorder: A Diffusion Tensor Imaging Study. Schizophr Res. 2007 Feb;90(1-3):360-2. PMID: 17126532. PMCID: PMC1876710.
  270. Flashman L.A., Roth R.M., Pixley H.S., Cleavinger H.B., McAllister T.W., Vidaver R., Saykin A.J. Cavum Septum Pellucidum in Schizophrenia: Clinical and Neuropsychological Correlates. Psychiatry Res. 2007 Feb 28;154(2):147-55. PMID: 17291728. PMCID: PMC1858669.
  271. Khachaturian M.H., Wisco J.J., Tuch D.S. Boosting the Sampling Efficiency of Q-Ball Imaging using Multiple Wavevector Fusion. Magn Reson Med. 2007 Feb;57(2):289-96. PMID: 17260358.
  272. McHugh T.L., Saykin A.J., Wishart H.A., Flashman L.A., Cleavinger H.B., Rabin L.A., Mamourian A.C., Shen L. Hippocampal Volume and Shape Analysis in an Older Adult Population. Clin Neuropsychol. 2007 Jan;21(1):130-45. PMID: 17366281. PMCID: PMC3482482.
  273. Fennema-Notestine C., Gamst A.C., Quinn B.T., Pacheco J., Jernigan T.L., Thal L., Buckner R., Killiany R.J., Blacker D., Dale A.M., Fischl B., Dickerson B., Gollub R.L. Feasibility of Multi-site Clinical Structural Neuroimaging Studies of Aging using Legacy Data. Neuroinformatics. 2007 Winter;5(4):235-45. PMID: 17999200.
  274. Kuroki N., Shenton M.E., Salisbury D.F., Hirayasu Y., Onitsuka T., Ersner-Hershfield H., Yurgelun-Todd D., Kikinis R., Jolesz F.A., McCarley R.W. Middle and Inferior Temporal Gyrus Gray Matter Volume Abnormalities in First-Episode Schizophrenia: An MRI Study. Am J Psychiatry. 2006 Dec;163(12):2103-10. PMID: 17151161. PMCID: PMC2766919.
  275. Turner J.A., Smyth P., Macciardi F., Fallon J.H., Kennedy J.L., Potkin S.G. Imaging Phenotypes and Genotypes in Schizophrenia. Neuroinformatics. 2006 Winter;4(1):21-49. PMID: 16595857.
  276. Wishart H.A., Saykin A.J., McAllister T.W., Rabin L.A., McDonald B.C., Flashman L.A., Roth R.M., Mamourian A.C., Tsongalis G.J., Rhodes C.H. Regional Brain Atrophy in Cognitively Intact Adults with a Single APOE Epsilon4 Allele. Neurology. 2006 Oct 10;67(7):1221-4. PMID: 17030756.
  277. Granziera C., DaSilva A.F.M., Snyder J., Tuch D.S., Hadjikhani N. Anatomical Alterations of the Visual Motion Processing Network in Migraine with and without Aura. PLoS Med. 2006 Oct;3(10):e402. PMID: 17048979. PMCID: PMC1609120.
  278. Ziyan U., Tuch D., Westin C-F. Segmentation of Thalamic Nuclei from DTI Using Spectral Clustering. Int Conf Med Image Comput Comput Assist Interv. 2006;9(Pt 2):807-14. PMID: 17354847.
  279. Styner M., Oguz I., Xu S., Brechbuhler C., Pantazis D., Levitt J., Shenton M.E., Gerig G. Framework for the Statistical Shape Analysis of Brain Structures using SPHARM-PDM. Insight J. 2006;(1071):242-250. PMID: 21941375. PMCID: PMC3062073.
  280. Corouge I., Fletcher P.T., Joshi S., Gouttard S., Gerig G. Fiber Tract-Oriented Statistics for Quantitative Diffusion Tensor MRI Analysis. Med Image Anal. 2006 Oct;10(5):786-98. PMID: 16926104.
  281. Haidar H., Bouix S., Levitt J.J., McCarley R.W., Shenton M.E., Soul J.S. Characterizing the Shape of Anatomical Structures with Poisson’s Equation. IEEE Trans Med Imaging. 2006 Oct;25(10):1249-57. PMID: 17024829. PMCID: PMC2785042.
  282. DiMaio S.P., Archip N., Hata N., Talos I-F., Warfield S.K., Majumdar A., Mcdannold N., Hynynen K., Morrison P.R., Wells III W.M., Kacher D.F., Ellis R.E., Golby A.J., Black P.M., Jolesz F.A., Kikinis R. Image-guided Neurosurgery at Brigham and Women’s Hospital. IEEE Eng Med Biol Mag. 2006 Sep-Oct;25(5):67-73. PMID: 17020201.
  283. Saykin A.J., Wishart H.A., Rabin L.A., Santulli R.B., Flashman L.A., West J.D., McHugh T.L., Mamourian A.C. Older Adults with Cognitive Complaints Show Brain Atrophy Similar to That of Amnestic MCI. Neurology. 2006 Sep 12;67(5):834-42. PMID: 16966547. PMCID: PMC3488276.
  284. Szymczak A., Stillman A., Tannenbaum A., Mischaikow K. Coronary Vessel Trees from 3D Imagery: A Topological Approach. Med Image Anal. 2006 Aug;10(4):548-59. PMID: 16798058.
  285. Niethammer M., Kalies W.D., Mischaikow K., Tannenbaum A. On the Detection of Simple Points in Higher Dimensions Using Cubical Homology. IEEE Trans Image Process. 2006 Aug;15(8):2462-9. PMID: 16900699.
  286. Blood A.J., Tuch D.S., Makris N., Makhlouf M.L., Sudarsky L.R., Sharma N. White Matter Abnormalities in Dystonia Normalize after Botulinum Toxin Treatment. Neuroreport. 2006 Aug 21;17(12):1251-5. PMID: 16951564. PMCID: PMC3039124.
  287. Angenent S., Pichon E., Tannenbaum A. Mathematical Methods in Medical Image Processing. Bulletin of the American Mathematical Society 2006; 43:365-396.
  288. Kuroki N., Kubicki M., Nestor P.G., Salisbury D.F., Park H-J., Levitt J.J., Woolston S., Frumin M., Niznikiewicz M., Westin C-F., Maier S.E., McCarley R.W., Shenton M.E. Fornix Integrity and Hippocampal Volume in Male Schizophrenic Patients. Biol Psychiatry. 2006 Jul 1;60(1):22-31. PMID: 16406249. PMCID: PMC2768597.
  289. Roth R.M., Koven N.S., Randolph J.J., Flashman L.A., Pixley H.S., Ricketts S.M., Wishart H.A., Saykin A.J. Functional Magnetic Resonance Imaging of Executive Control in Bipolar Disorder. Neuroreport. 2006 Jul 31;17(11):1085-9. PMID: 16837832.
  290. Salat D.H., Smith E.E., Tuch D.S., Benner T., Pappu V., Schwab K.M., Gurol M.E., Rosas H.D., Rosand J., Greenberg S.M. White Matter Alterations in Cerebral Amyloid Angiopathy Measured by Diffusion Tensor Imaging. Stroke. 2006 Jul;37(7):1759-64. PMID: 16763176.
  291. O'Donnell L., Kubicki M., Shenton M.E., Dreusicke M.H., Grimson W.E.L., Westin C-F. A Method for Clustering White Matter Fiber Tracts. AJNR Am J Neuroradiol. 2006 May;27(5):1032-6. PMID: 16687538. PMCID: PMC2768142.
  292. Pohl K.M., Fisher III J.W., Grimson W.E.L., Kikinis R., Wells III W.M. A Bayesian Model for Joint Segmentation and Registration. Neuroimage. 2006 May 15;31(1):228-39. PMID: 16466677.
  293. Miller J.V. Probability Distributions for the Insight Toolkit. The Insight Journal - 2006 January - June; #68
  294. Hsiao C., Mohan S., Hershkovitz E., Tannenbaum A., Williams L.D. Single Nucleotide RNA Choreography. Nucleic Acids Res. 2006 Mar 10;34(5):1481-91. PMID: 16531589. PMCID: PMC1401506.
  295. Hershkovits E., Sapiro G., Tannenbaum A., Williams L.D. Statistical Analysis of RNA Backbone. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2006; 3(1):33-46. PMID: 17048391. PMCID: PMC2811324.
  296. Melonakos J., Krishnan K., Tannenbaum A. An ITK Filter for Bayesian Segmentation: itkBayesianClassifierImageFilter. The Insight Journal - 2006 January - June; #69
  297. Michailovich O.V., Tannenbaum A. Despeckling of Medical Ultrasound Images. IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control, 2006; 53(1):64-78. PMID: 16471433.
  298. Nakamura M., McCarley R.W., Kubicki M., Dickey C.C., Niznikiewicz M.A., Voglmaier M.M., Seidman L.J., Maier S.E., Westin C-F., Kikinis R., Shenton M.E. Fronto-Temporal Disconnectivity in Schizotypal Personality Disorder: A Diffusion Tensor Imaging Study. Biol Psychiatry. 2005 Sep 15;58(6):468-78. PMID: 15978550. PMCID: PMC2768055.
  299. Tuch D.S., Wisco J.J., Khachaturian M.H., Ekstrom L.B., Kötter R., Vanduffel W. Q-ball Imaging of Macaque White Matter Architecture. Philos Trans R Soc Lond B Biol Sci. 2005 May 29;360(1457):869-79. PMID: 16087432. PMCID: PMC1854934.
  300. Montminy M.D., Tannenbaum A.R., Macosko C.W. The 3D Structure of Real Polymer Foams. J Colloid Interface Sci. 2004 Dec 1;280(1):202-11. PMID: 15476791.
  301. Hershkovits E., Tannenbaum E., Howerton S.B., Sheth A., Tannenbaum A., Williams L.D. Automated Identification of RNA Conformational Motifs: Theory and Application to the HM LSU 23S rRNA. Nucleic Acids Res. 2003 Nov 1;31(21):6249-57. PMID: 14576313. PMCID: PMC275477.

Conference Reports

  1. Sadeghi N., Prastawa M.W., Fletcher P.T., Vachet C., Wang B., Gilmore J., Gerig G. Multivariate Modeling of Longitudinal MRI in Early Brain Development with Confidence Measures. Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro 2013;
  2. Wang B., Prastawa M., Irimia A., Chambers M.C., Sadeghi N., Vespa P.M., Van Horn J.D., Gerig G. Analyzing Imaging Biomarkers for Traumatic Brain Injury using 4D Modeling of Longitudinal MRI. Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro 2013;
  3. Vardhan A., Prastawa M., Sharma A., Piven J., Gerig G. Modeling Longitudinal MRI Changes in Populations Using a Localized, Information-Theoretic Measure of Contrast. Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro 2013;
  4. Sharma A., Fletcher P.T., Gilmore J.H., Escolar M.L., Vardhan A., Gupta A., Styner M., Gerig G. Spatiotemporal Modeling of Discrete-Time Distribution-Valued Data Applied to DTI Tract Evolution in Infant Neurodevelopment. Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro 2013;
  5. Ghayoor A., Vaidya J.G., Johnson H.J. Development of a Novel Constellation Based Landmark Detection Algorithm. Proc. SPIE Medical Imaging, 2013;8669:86693F-6.
  6. Matsui J., Kim E.Y., Magnotta V., Johnson H. Derivation of Fiber Tracts Representing the Corticospinal Tract using Anatomical Landmarks. Int Conf Med Image Comput Comput Assist Interv. 2012;15(WS). DTI Tractography Challenge Workshop.
  7. Shackleford J.A., Kandasamy N., Sharp G.C. Accelerating MI-based B-spline Registration using CUDA Enabled GPUs. Int Conf Med Image Comput Comput Assist Interv. 2012;15(WS). Workshop on Data- and Compute-Intensive Clinical and Translational Imaging Applications.
  8. Shackleford J.A., Shusharina N., Verberg J., Warmerdam G., Winey B., Neuner M., Steininger P., Arbisser A., Golland P., Lou Y., Paganelli C., Peroni M., Riboldi M., Baroni G., Zaffino P., Spadea M.F., Apte A., Saleh Z., Deasy J.O., Mori S., Kandasamy N., Sharp G.C. Plastimatch 1.6 – Current Capabilities and Future Directions. Int Conf Med Image Comput Comput Assist Interv. 2012;15(WS). Workshop on Image-Guidance and Multimodal Dose Planning in Radiation Therapy.
  9. Durrleman S., Prastawa M., Korenberg J.R., Joshi S., Trouvé A., Gerig G. Topology Preserving Atlas Construction from Shape Data without Correspondence using Sparse Parameters. Int Conf Med Image Comput Comput Assist Interv. 2012;15(Pt 3):223-30. PMID: 23286134.
  10. Awate S., Zhu P., Whitaker A.R.T. How Many Templates Does It Take for a Good Segmentation? Error Analysis in Multiatlas Segmentation as a Function of Database Size. Int Conf Med Image Comput Comput Assist Interv. 2012;15(Pt 2):103-114.
  11. Csapo I., Davis B., Shi Y., Sanchez M., Styner M., Niethammer M. Longitudinal Image Registration with Non-uniform Appearance Change. Int Conf Med Image Comput Comput Assist Interv. 2012;15(Pt 3):280-8. PMID: 23286141. PMCID: PMC3584325.
  12. Schultz T. Learning a Reliable Estimate of the Number of Fiber Directions in Diffusion MRI. Int Conf Med Image Comput Comput Assist Interv. 2012;15(Pt 3):493-500. PMID: 23286167.
  13. Venkataraman A., Kubicki M., Golland P. From Brain Connectivity Models to Identifying Foci of a Neurological Disorder. Int Conf Med Image Comput Comput Assist Interv. 2012;15(Pt 1):715-22. PMID: 23285615. PMCID: PMC3539203.
  14. Liu W., Awate S.P., Fletcher P.T. Group Analysis of Resting-state fMRI by Hierarchical Markov Random Fields. Int Conf Med Image Comput Comput Assist Interv. 2012;15(Pt 3):189-96. PMID: 23286130.
  15. Fishbaugh J., Prastawa M., Durrleman S., Piven J., Gerig G. Analysis of Longitudinal Shape Variability via Subject Specific Growth Modeling. Int Conf Med Image Comput Comput Assist Interv. 2012;15(Pt 1):731-8. PMID: 23285617.
  16. Wachinger C., Golland P. Spectral Label Fusion. Int Conf Med Image Comput Comput Assist Interv. 2012;15(Pt 3):410-17. PMID: 23286157. PMCID: PMC3539206.
  17. Hong Y., Joshi S., Sanchez M., Styner M., Niethammer M. Metamorphic Geodesic Regression. Int Conf Med Image Comput Comput Assist Interv. 2012;15(Pt 3):197-205. PMID: 23286131. PMCID: PMC3584322.
  18. Shackleford J.A., Yang Q., Lourenço A.M., Shusharina N., Kandasamy N., Sharp G.C. Analytic Regularization of Uniform Cubic B-Spline Deformation Fields. Int Conf Med Image Comput Comput Assist Interv. 2012;15(Pt 2):122-9. PMID: 23286040.
  19. Gholami B., Norton I., Tannenbaum A.R., Agar N.Y.R. Recursive Feature Elimination for Brain Tumor Classification using Desorption Electrospray Ionization Mass Spectrometry Imaging. Conf Proc IEEE Eng Med Biol Soc. 2012;2012:5258-61. PMID: 23367115.
  20. Zhu L., Gao Y., Yezzi A., MacLeod R., Cates J., Tannenbaum A. Automatic Segmentation of the left Atrium from MRI Images using Salient Feature and Contour Evolution. Conf Proc IEEE Eng Med Biol Soc. 2012;2012:3211-4. PMID: 23366609.
  21. Farzinfar M., Dietrich C., Smith R., Li Y., Gupta A., Liu Z., Styner M. Entropy Based DTI Quality Control via Regional Orientation Distribution. Proceedings of the 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro 2012; 22–26. PMID: 23595508. PMCID: PMC3625986.
  22. Wang B., Prastawa M., Awate S.P., Irimia A., Chambers M.C., Vespa P.M., Van Horn J.D., Gerig G. Segmentation of Serial MRI of TBI patients using Personalized Atlas Construction and Topological Change Estimation. Proceedings of the 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro 2012; 1152-1155.
  23. Gouttard S., Goodlett C., Kubicki M., Gerig G. Measures for Validation of DTI Tractography. Proceedings of SPIE 2012;8314, 83140J
  24. Wang B., Prastawa M., Irimia A., Chambers M.C., Vespa P.M., Van Horn J.D., Gerig G. A Patient-specific Segmentation Framework for Longitudinal MR Images of Traumatic Brain Injury. Proceedings of SPIE 2012;8314, 831402.
  25. Fishbaugh J., Durrleman S., Piven J., Gerig G. A Framework for Longitudinal Data Analysis via Shape Regression. Proceedings of SPIE 2012;8314, 83143K
  26. Prastawa M., Awate S.P., Gerig G. Building Spatiotemporal Anatomical Models using Joint 4-D Segmentation, Registration, and Subject-Specific Atlas Estimation. IEEE Workshop on Mathematical Methods in Biomedical Image Analysis 2012; p. 49-56. PMCID: PMC3615562.
  27. Karasev P., Kolesov I., Chudy K., Tannenbaum A., Muller G., Xerogeanes J. Interactive MRI Segmentation with Controlled Active Vision. IEEE Conference on Decision and Control Dec. 2011;
  28. Nho K., Shen L., Kim S., Swaminathan S., Risacher S.L., Saykin A.J. The Effect of Reference Panels and Software Tools on Genotype Imputation. Proceedings of AMIA Annu Symp 2011;1013-1018. PMID: 22195161. PMCID: PMC3243280.
  29. Tokuda J., Hata N. OpenIGTLink Protocol Version 2. Int Conf Med Image Comput Comput Assist Interv. 2011;14(WS). Workshop on Systems & Architecture for Computer Assisted Intervention
  30. Depa M., Holmvang G., Schmidt E.J., Golland P., Sabuncu M.R. Towards Efficient Label Fusion by Pre-Alignment of Training Data. Int Conf Med Image Comput Comput Assist Interv. 2011;14(WS):38-46. Workshop on Multi-Atlas Labeling and Statistical Fusion.
  31. Seshamani S., Chintalapani G., Taylor R. Iterative Refinement of Point Correspondences for 3D Statistical Shape Models. Int Conf Med Image Comput Comput Assist Interv. 2011;14(Pt 2):417-25. PMID: 21995056.
  32. Niethammer M., Hart G.L., Pace D.F., Vespa P.M., Irimia A., Van Horn J.D., Aylward S.R. Geometric Metamorphosis. Int Conf Med Image Comput Comput Assist Interv. 2011;14(Pt 2):639-46. PMID: 21995083.
  33. Pace D., Niethammer M., Aylward S.R. Sliding Geometries in Deformable Image Registration. Int Conf Med Image Comput Comput Assist Interv. 2011;14(WS):141-148. Workshop on Abdominal Imaging
  34. Zhu P., Awate S.P., Gerber S., Whitaker R.T. Fast Shape-based Nearest-neighbor Search for Brain MRIs using Hierarchical Feature Matching. Int Conf Med Image Comput Comput Assist Interv. 2011;14(Pt 2):484-91. PMID: 21995064.
  35. Fishbaugh J., Durrleman S., Gerig G. Estimation of Smooth Growth Trajectories with Controlled Acceleration from Time Series Shape Data. Int Conf Med Image Comput Comput Assist Interv. 2011;14(Pt 2):401-8. PMID: 21995054.
  36. Datar M., Gur Y., Paniagua B., Styner M., Whitaker R.T. Geometric Correspondence for Ensembles of Nonregular Shapes. Int Conf Med Image Comput Comput Assist Interv. 2011;14(Pt 2):368-75. PMID: 21995050. PMCID: PMC3346950.
  37. Dalca A., Danagoulian G., Kikinis R., Schmidt E.J., Golland P. Segmentation of Nerve Bundles and Ganglia in Spine MRI Using Particle Filters. Int Conf Med Image Comput Comput Assist Interv. 2011;14(Pt 3):537-45. PMID: 22003741. PMCID: PMC3232745.
  38. Kikinis R., Pieper S. 3D Slicer as a Tool for Interactive Brain Tumor Segmentation. Conf Proc IEEE Eng Med Biol Soc. 2011 Aug;2011:6982-4. PMID: 22255945.
  39. Gholami B., Agar N.Y.R., Jolesz F.A., Haddad W.M., Tannenbaum A.R. A Compressive Sensing Approach for Glioma Margin Delineation using Mass Spectrometry. Conf Proc IEEE Eng Med Biol Soc. 2011 Aug;2011:5682-5. PMID: 22255629.
  40. Peroni M., Golland P., Sharp G.C., Baroni G. Ranking of Stopping Criteria for Log Domain Diffeomorphic Demons Application in Clinical Radiation Therapy. Conf Proc IEEE Eng Med Biol Soc. 2011;2011:4884-7. PMID: 22255433.
  41. Menze B.H., Van Leemput K., Honkela A., Konukoglu E., Weber M-A., Ayache N., Golland P. A Generative Approach for Image-based Modeling of Tumor Growth. Inf Process Med Imaging. 2011;22:735-47. PMID: 21761700. PMCID: PMC3237122.
  42. Langs G., Lashkari D., Sweet A., Tie Y., Rigolo L., Golby A.J., Golland P. Learning an Atlas of a Cognitive Process in its Functional Geometry. Inf Process Med Imaging. 2011;22:135-46. PMID: 21761652. PMCID: PMC3222689.
  43. Hao X., Whitaker R.T., Fletcher P.T. Adaptive Riemannian Metrics for Improved Geodesic Tracking of White Matter. Inf Process Med Imaging. 2011;22:13-24. PMID: 21761642. PMCID: PMC3250233.
  44. Durrleman S., Prastawa M., Gerig G., Joshi S. Optimal Data-driven Sparse Parameterization of Diffeomorphisms for Population Analysis. Inf Process Med Imaging. 2011;22:123-34. PMID: 21761651.
  45. Wassermann D., Rathi Y., Bouix S., Kubicki M., Kikinis R., Shenton M.E., Westin C-F. White Matter Bundle Registration and Population Analysis Based on Gaussian Processes. Inf Process Med Imaging. 2011;22:320-32. PMID: 21761667. PMCID: PMC3140022.
  46. Veeraraghavan H., Miller J.V. Active Learning Guided Interactions for Consistent Image Segmentation with Reduced User Interactions. Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro 2011; 1645–1648.
  47. Zhu L., Gao Y., Mohan V., Stillman A., Faber T., Tannenbaum A. Estimation of Myocardial Volume at Risk from CT Angiography. Proc SPIE. 2011 March 9; 7963: 79632A–79632A-6. PMID: 21572535. PMCID: PMC3092531.
  48. Pace D., Enquobahrie A., Yang H., Aylward S.R., Niethammer M. Deformable Image Registration of Sliding Organs Using Anisotropic Diffusive Regularization. Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro 2011;407-413. PMID: 21785755. PMCID: PMC3141338.
  49. Boucharin A., Oguz I., Vachet C., Shi Y., Sanchez M., Styner M. Efficient, Graph-based White Matter Connectivity from Orientation Distribution Functions via Multi-directional Graph Propagation. Proceedings of SPIE 2011; 7962(79620S):1-8. PMID: 23066452. PMCID: PMC3468156.
  50. Vachet C., Hazlett H.C., Niethammer M., Oguz I., Cates J., Whitaker R.T., Pivend J., Styner M. Group-wise Automatic Mesh-Based Analysis of Cortical Thickness. Proceedings of SPIE 2011; 7962(796227)1-10.
  51. Huang J., Gholami B., Agar N.Y.R., Norton I., Haddad W.M., Tannenbaum A.R. Classification of Astrocytomas and Oligodendrogliomas from Mass Spectrometry Data using Sparse Kernel Machines. Conf Proc IEEE Eng Med Biol Soc. 2011;2011:7965-8. PMID: 22256188.
  52. Langs G., Golland P., Tie Y., Rigolo L., Golby A.J. Functional Geometry Alignment and Localization of Brain Areas. Proceedings of the 24th Annual Conference on Neural Information Processing Systems 2010; 1:1225-1233.
  53. Nho K., Shen L., Kim S., Risacher S.L., West J.D., Foroud T., Jack C.R., Weiner M.W., Saykin A.J. Automatic Prediction of Conversion from Mild Cognitive Impairment to Probable Alzheimer's Disease using Structural Magnetic Resonance Imaging. Proceedings of AMIA Annu Symp 2010 Nov 13;2010:542-6. PMID: 21347037. PMCID: PMC3041374.
  54. Depa M., Sabuncu M., Holmvang G., Nezafat R., Schmidt E.J., Golland P. Robust Atlas-Based Segmentation of Highly Variable Anatomy: Left Atrium Segmentation. Int Conf Med Image Comput Comput Assist Interv. 2010;13(WS):85-94. Workshop on Statistical Atlases and Computational Models of the Heart: Mapping Structure and Function
  55. Hart G., Shi Y., Zhu H., Sanchez M., Styner M., Niethammer M. DTI Longitudinal Atlas Construction as an Average of Growth Models. Int Conf Med Image Comput Comput Assist Interv. 2010;13(WS):1-12. Workshop on Spatio-Temporal Image Analysis for Longitudinal and Time-Series Image Data.
  56. Ha L., Prastawa M., Gerig G., Gilmore J.H., Silva C.T., Joshi S. Image Registration Driven by Combined Probabilistic and Geometric Descriptors. Int Conf Med Image Comput Comput Assist Interv. 2010;13(Pt 2):602-9. PMID: 20879365.
  57. Riklin-Raviv T., Ljosa V., Conery A.L., Ausubel F.M., Carpenter A.E., Golland P., Wählby C. Morphology-guided Graph Search for Untangling Objects: C. Elegans Analysis. Int Conf Med Image Comput Comput Assist Interv. 2010;13(Pt 3):634-41. PMID: 20879454. PMCID: PMC3050593.
  58. Niethammer M., Boucharin A., Zach C., Shi Y., Maltbie E., Sanchez M., Styner M. DTI Connectivity by Segmentation. Proceedings of Medical Imaging and Augmented Reality 2010, Lecture Notes in Computer Science 2010;6326:200-210.
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  97. Sandhu R., Dambreville S., Tannenbaum A. Point Set Registration via Particle Filtering and Stochastic Dynamics. IEEE Transactions on Pattern Analysis and Machine Intelligence 2009;
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  107. Cates J., Fletcher T., Whitaker R.T. A Hypothesis Testing Framework for High-Dimensional Shape Models. Mathematical Foundations of Computational Anatomy Workshop. 2008, pp. 170–181
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  118. Van Leemput K., Bakkour A., Benner T., Wiggins G., Wald L.L., Augustinack J., Dickerson B.C., Golland P., Fischl B. Model-Based Segmentation of Hippocampal Subfields in Ultra-High Resolution In Vivo MRI. Int Conf Med Image Comput Comput Assist Interv. 2008;11(Pt 1):235-245. PMID: 18979753. PMCID: PMC2799119.
  119. Le Faucheur X., Brani V., Delphine N., Tannenbaum A. Adaptive Bayesian Shrinkage Model for Spherical Wavelet Based Denoising and Compression of Hippocampus Shapes. Int Conf Med Image Comput Comput Assist Interv. 2008; 11(WS): 87–96. Proceedings of the Workshop on Computational Anatomy and Physiology of the Hippocampus (CAPH'08).
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  121. Tokuda J., Fischer G.S., Csoma C., DiMaio S.P., Gobbi D.G., Fichtinger G., Tempany C.M., Hata N. Software Strategy for Robotic Transperineal Prostate Therapy in Closed-Bore MRI. Int Conf Med Image Comput Comput Assist Interv. 2008;11(Pt 2):701-709. PMID: 18982666. PMCID: PMC2692941.
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  123. Prastawa M., Gerig G. Automatic MS Lesion Segmentation by Outlier Detection and Information Theoretic Region Partitioning. Int Conf Med Image Comput Comput Assist Interv. 2008;11(WS). Proceedings of the Grand Challenge II Workshop.
  124. Ur Rehman T., Haber E., Pohl K.M., Haker S., Halle M., Talos I-F., Wald L.L., Kikinis R., Tannenbaum A. Multimodal Registration of White Matter Brain Data via Optimal Mass Transport. Int Conf Med Image Comput Comput Assist Interv. 2008;11(WS):27-36. Proceedings of the 3rd Workshop on Computational Biomechanics for Medicine (CBM'08).
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  128. U-Thainual P., Iordachita I., Fichtinger G. The Perk Station: Design of a Percutaneous Intervention Training Suite. Proceedings of the 20th International Conference of the Society for Medical Innovation and Technology (SMIT), 2008; 148-153.
  129. Michailovich O.V., Tannenbaum A. Fast Approximation of Smooth Functions from Samples of Partial Derivatives with Applications to Phase Unwrapping. IEEE Signal Processing 2008; 88:358-374.
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  131. Sandhu R., Dambreville S., Tannenbaum A. Particle Filtering for Registration of 2D and 3D Point Sets with Stochastic Dynamics. Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition 2008.
  132. Lankton S., Melonakos J., Malcolm J., Dambreville S., Tannenbaum A. Localized Statistics for DW-MRI Fiber Bundle Segmentation. IEEE Workshop on Mathematical Methods in Biomedical Image Analysis. 2008;
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  149. Davis B.C., Fletcher P.T., Bullitt E., Joshi S. Population Shape Regression from Random Design Data. Proceedings of the 11th IEEE International Conference on Computer Vision 2007;
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  157. Pébay P., Thompson D., Shepherd J., Knupp P., Lisle C., Magnotta V., Grosland N. New Applications of the Verdict Library for Standardized Mesh Verification Pre, Post, and End-to-End Processing. Proceedings of the 16th International Meshing Roundtable, 2007.
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  161. Faucheur X.L., Vidakovic B., Tannenbaum A. Bayesian Spherical Wavelet Shrinkage:Applications to Shape Analysis. Proceedings of SPIE Optics 2007; 6763:67630G-1.
  162. Maddah M., Wells III W.M., Warfield S.K., Westin C-F., Grimson W.E.L. Probabilistic Clustering and Quantitative Analysis of White Watter Fiber Tracts. Inf Process Med Imaging. 2007;20:372-83. PMID: 17633714. PMCID: PMC3266067.
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  164. Fletcher P.T., Powell S., Foster N.L., Joshi S.C. Quantifying Metabolic Asymmetry Module Structure in Alzheimer's Disease. Inf Process Med Imaging. 2007;20:446-57. PMID: 17633720.
  165. Fletcher P.T., Tao R., Jeong W-K., Whitaker R.T. A Volumetric Approach to Quantifying Region-to-region White Matter Connectivity in Diffusion Tensor MRI. Inf Process Med Imaging. 2007;20:346-358. PMID: 17633712.
  166. Postelnicu G., Zöllei L., Desikan R., Fischl B. Geometry Driven Volumetric Registration. Inf Process Med Imaging. 2007;20:675-86. PMID: 17633739.
  167. Fischl B., Wald L. Phase Maps Reveal Cortical Architecture. Proc Natl Acad Sci U S A. 2007 Jul 10;104(28):11513-4. PMID: 17609374. PMCID: PMC1913865.
  168. Cates J., Fletcher P.T., Styner M., Shenton M.E., Whitaker R.T. Shape Modeling and Analysis with Entropy-Based Particle Systems. Inf Process Med Imaging. 2007;20:333-45. PMID: 17633711. PMCID: PMC2768473.
  169. Nain D., Styner M., Niethammer M., Levitt J.J., Shenton M.E., Gerig G., Bobick A., Tannenbaum A. Statistical Shape Analysis of Brain Structures Using Spherical Wavelets. Proceedings of the 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro 2007; 4:209-212. PMID: 19888446. PMCID: PMC2771415.
  170. Styner M., Xu S., El-Sayed M., Gerig G. Correspondence Evaluation in Local Shape Analysis and Structural Subdivision. Proc IEEE Intl Symp on Biomedical Imaging 2007; 4:1192-1195.
  171. Styner M., Oguz I., Xu S., Pantazis D., Gerig G. Statistical Group Differences in Anatomical Shape Analysis using Hotelling T2 Metric. Proceedings of SPIE Medical Imaging 2007; 6512:1-65123Z-1.
  172. Lankton S., Nain D., Yezzi A., Tannenbaum A. Hybrid Geodesic Region-based Curve Evolutions for Image Segmentation. Proceedings of SPIE Medical Imaging 2007; 6510:65104U-1
  173. Melonakos J., Gao Y., Tannenbaum A. Tissue Tracking: Applications for Brain MRI Classification. Proceedings of SPIE Medical Imaging 2007; 6512:651218-1.
  174. Fletcher P.T., Whitaker R.T. Riemannian Metrics on the Space of Solid Shapes. Int Conf Med Image Comput Comput Assist Interv. 2006;9(WS):
  175. Blezek D.J., Miller J.V. Atlas Stratification. Int Conf Med Image Comput Comput Assist Interv. 2006;9(Pt 1):712-9. PMID: 17354953.
  176. Yeo B.T.T., Ou W., Golland P. Invertible Filter Banks on the 2-Sphere. Proceedings of the 13th IEEE International Conference on Image Processing 2006; 2161-2164.
  177. O'Donnell L., Westin C-F. High-Dimensional White Matter Atlas Generation and Group Analysis. Int Conf Med Image Comput Comput Assist Interv. 2006;9(Pt 2):243-51. PMID: 17354778.
  178. Tao X., Miller J.V. A Method for Registering Diffusion Weighted Magnetic Resonance Images. Int Conf Med Image Comput Comput Assist Interv. 2006;9(Pt 2):594-602. PMID: 17354821.
  179. Kim S., Smyth P., Stern H. A Nonparametric Bayesian Approach to Detecting Spatial Activation Patterns in FMRI Data. Int Conf Med Image Comput Comput Assist Interv. 2006;9(Pt 2):217-24. PMID: 17354775.
  180. Nain D., Haker S., Bobick A., Tannenbaum A. Shape-Driven 3D Segmentation Using Spherical Wavelets. Int Conf Med Image Comput Comput Assist Interv. 2006;9(Pt 1):66-74. PMID: 17354875.
  181. Goodlett C., Davis B., Jean R., Gilmore J., Gerig G. Improved Correspondence for DTI Population Studies via Unbiased Atlas Building. Int Conf Med Image Comput Comput Assist Interv. 2006;9(Pt 2):260-7. PMID: 17354780.
  182. Dauguet J., Peled S., Berezovskii V., Delzescaux T., Warfield S.K., Born R., Westin C-F. 3D Histological Reconstruction of Fiber Tracts and Direct Comparison with Diffusion Tensor MRI Tractography. Int Conf Med Image Comput Comput Assist Interv. 2006;9(Pt 1):109-16. PMID: 17354880.
  183. Pohl K.M., Fisher III J.W., Shenton M.E., McCarley R.W., Grimson W.E.L., Kikinis R., Wells III W.M. Logarithm Odds Maps for Shape Representation. Int Conf Med Image Comput Comput Assist Interv. 2006;9(Pt 1):955-963. PMID: 17354865. PMCID: PMC2994060.
  184. Niethammer M., Bouix S., Westin C-F., Shenton M.E. Fiber Bundle Estimation and Parameterization. Int Conf Med Image Comput Comput Assist Interv. 2006;9(Pt 2):252-9. PMID: 17354779. PMCID: PMC2773691.
  185. Cates J., Fletcher P.T., Whitaker R.T. Entropy-Based Particle Systems for Shape Correspondence. Int Conf Med Image Comput Comput Assist Interv. 2006;9(WS):90-99.
  186. Basu S., Fletcher T., Whitaker R.T. Rician Noise Removal in Diffusion Tensor MRI. Int Conf Med Image Comput Comput Assist Interv. 2006;9(Pt 1):117-25. PMID: 17354881.
  187. Niethammer M., San José Estépar R., Bouix S., Shenton M.E., Westin C-F. On Diffusion Tensor Estimation. Conf Proc IEEE Eng Med Biol Soc. 2006;1:2622-5. PMID: 17946125. PMCID: PMC2791793.
  188. Yu P., Han X., Ségonne F., Liu A.K., Poldrack R.A., Golland P., Fischl B. Shape-based Discrimination and Classification of Cortical Surface. Proceedings of the 18th International Conference on Pattern Recognition 2006; 18:445-448.
  189. Gao Y., Melonakos J., Tannenbaum A. Conformal Flattening ITK Filter. The Insight Journal - 2006 MICCAI Open Science Workshop
  190. Oguz I., Gerig G., Barre S., Styner M. KWMeshVisu: A Mesh Visualization Tool for Shape Analysis. The Insight Journal - 2006 MICCAI Open Science Workshop
  191. Heimann T., Oguz I., Wolf I., Styner M., Meinzer H-P. Implementing the Automatic Generation of 3D Statistical Shape Models with ITK. The Insight Journal - 2006 MICCAI Open Science Workshop
  192. Yu P., Han X., Ségonne F., Pienaar R., Buckner R.L., Golland P., Grant P.E., Fischl B. Cortical Surface Shape Analysis Based on Spherical Wavelet Transformation. IEEE Workshop on Mathematical Methods in Biomedical Image Analysis. 2006; WS:60-67.
  193. Rathi Y., Dambreville S., Tannenbaum A. Comparative Analysis of Kernel Methods for Statistical Shape Learning. Proceedings of the 2nd International Workshop on Computer Vision Approaches to Medical Image Analysis 2006; 2:96-107.
  194. Maddah M., Grimson W.E.L., Warfield S.K. Statistical Modeling and EM Clustering of White Matter Fiber Tracts. Proceedings of the 3rd IEEE International Symposium on Biomedical Imaging: From Nano to Macro 2006; 53-56.
  195. Styner M., Jomier M., Gerig G. Closed and Open Source Neuroimage Analysis Tools and Libraries at UNC. Proceedings of the 3rd IEEE International Symposium on Biomedical Imaging: From Nano to Macro 2006; 702-705.
  196. Gerig G., Joshi S., Fletcher T., Gorczowski K., Xu S., Pizer S.M., Styner M. Statistics of Populations of Images and its Embedded Objects: Driving Applications in Neuroimaging. Proceedings of the 3rd IEEE International Symposium on Biomedical Imaging: From Nano to Macro 2006; 1120-1123.
  197. O'Shea J.P., Wells III W.M., Golby A.J. Using Surface Normals to Localize Subdural Intracranial Electrodes Placed during Neurosurgery. Proceedings of the 3rd IEEE International Symposium on Biomedical Imaging: From Nano to Macro 2006; 331-334.
  198. Yang Y., Tannenbaum A., Giddens D. Automatic Segmentation of Coronary Arteries Using Bayesian Driven Implicit Surfaces. Proceedings of the 3rd IEEE International Symposium on Biomedical Imaging: From Nano to Macro 2006; 189-192.
  199. Pieper S., Lorensen W.E., Schroeder W., Kikinis R. The NA-MIC Kit: ITK, VTK, Pipelines, Grids and 3D Slicer as an Open Platform for the Medical Image Computing Community. Proceedings of the 3rd IEEE International Symposium on Biomedical Imaging: From Nano to Macro 2006; 698-701.
  200. Al-Hakim R., Nain D., Melonakos J., Tannenbaum A., Fallon J.H. A Dorsolateral Prefrontal Cortex Semi-Automatic Segmenter. Proceedings of SPIE Medical Imaging 2006; 6144:170-177.
  201. Zöllei L., Wells III W.M. Multi-modal Image Registration Using Dirichlet-encoded Prior Information. Proceedings of the 3rd International Workshop on Biomedical Image Registration 2006; 3(WS):34-42.
  202. Yang Y., George S., Martin D.R., Tannenbaum A.R., Giddens D.P. 3D Modeling of Patient-specific Geometries of Portal Veins Using MR Images. Conf Proc IEEE Eng Med Biol Soc. 2006;1:5290-3. PMID: 17946691.
  203. Rathi Y., Olver P., Sapiro G., Tannenbaum A. Affine Invariant Surface Evolutions for 3D Image Segmentation. Proceedings of IS&T/SPIE Electronic Imaging, 2006.
  204. Pichon E., Westin C-F., Tannenbaum A.R. A Hamilton-Jacobi-Bellman Approach to High Angular Resolution Diffusion Tractography. Int Conf Med Image Comput Comput Assist Interv. 2005;8(Pt 1):180-7. PMID: 16685844.
  205. Zöllei L., Learned-Miller E., Grimson W.E.L., Wells III W.M. Efficient Population Registration of 3D Data. Proceedings of the 10th IEEE International Conference on Computer Vision Workshop 2005; 10(WS):
  206. Nain D., Haker S., Bobick A., Tannenbaum A.R. Multiscale 3D Shape Analysis Using Spherical Wavelets. Int Conf Med Image Comput Comput Assist Interv. 2005;8(Pt 2):459-67. PMID: 16685992.
  207. O'Donnell L., Westin C-F. White Matter Tract Clustering and Correspondence in Populations. Int Conf Med Image Comput Comput Assist Interv. 2005;8(Pt 1):140-7. PMID: 16685839.
  208. Pohl K.M., Fisher III J.W., Levitt J.J., Shenton M.E., Kikinis R., Grimson W.E.L., Wells III W.M. A Unifying Approach to Registration, Segmentation, and Intensity Correction. Int Conf Med Image Comput Comput Assist Interv. 2005;8(Pt 1):310-8. PMID: 16685860. PMCID: PMC2784666.
  209. Kim S., Smyth P., Stern H., Turner J.A. Parametric Response Surface Models for Analysis of Multi-site fMRI Data. Int Conf Med Image Comput Comput Assist Interv. 2005;8(Pt 1):352-9. PMID: 16685865.
  210. Zhu L., Haker S., Tannenbaum A. Mass Preserving Registration for Heart MR Images. Int Conf Med Image Comput Comput Assist Interv. 2005;8(Pt 2):147-54. PMID: 16685954.
  211. Maddah M., Mewes A.U.J., Haker S., Grimson W.E.L., Warfield S.K. Automated Atlas-based Clustering of White Matter Fiber Tracts from DTMRI. Int Conf Med Image Comput Comput Assist Interv. 2005;8(Pt 1):188-95. PMID: 16685845.
  212. Yang Y., Zhu L., Haker S., Tannenbaum A.R., Giddens D.P. Harmonic Skeleton Guided Evaluation of Stenoses in Human Coronary Arteries. Int Conf Med Image Comput Comput Assist Interv. 2005;8(Pt 1):490-7. PMID: 16685882.
  213. Melonakos J., Al-Hakim R., Fallon J.H. Knowledge-Based Segmentation of Brain MRI Scans Using the Insight Toolkit. Int Conf Med Image Comput Comput Assist Interv. 2005;8(WS). Open-Source Workshop.
  214. Corouge I., Fletcher P.T., Joshi S., Gilmore J.H., Gerig G. Fiber Tract-Oriented Statistics for Quantitative Diffusion Tensor MRI Analysis. Int Conf Med Image Comput Comput Assist Interv. 2005;8(Pt 1):131-9. PMID: 16685838.
  215. Martin-Fernández M., Bouix S., Ungar L., McCarley R.W., Shenton M.E. Two Methods for Validating Brain Tissue Classifiers. Int Conf Med Image Comput Comput Assist Interv. 2005;8(Pt 1):515-22. PMID: 16685885. PMCID: PMC2775440.
  216. Pohl K.M., Fisher III J.W., Wells III W.M., Kikinis R., Grimson W.E.L. Shape Based Segmentation of Anatomical Structures in Magnetic Resonance Images. Proceedings of the Tenth IEEE International Conference on Computer Vision Workshop Computer Vision for Biomedical Image Applications Current Techniques and Future Trend 2005; LNCS 3765.
  217. Goodlett C., Corouge I., Jomier M., Gerig G. A Quantitative DTI Fiber Tract Analysis Suite. Int Conf Med Image Comput Comput Assist Interv. 2005;8(WS). Open-Source Workshop.
  218. Tasdizen T., Suyash A., Whitaker R.T. A Nonparametric, Entropy-minimizing MRI Tissue Classification Algorithm Implementation Using ITK. Int Conf Med Image Comput Comput Assist Interv. 2005;8(WS). Open-Source Workshop.
  219. Pohl K.M., Bouix S., Shenton M.E., Grimson W.E.L., Kikinis R. Automatic Segmentation Using Non-Rigid Registration. Short communications, Int Conf Med Image Comput Comput Assist Interv. 2005;8. PMID: 20407623. PMCID: PMC2856350.
  220. Pichon E., Tannenbaum A. Curve Segmentation using Directional Information, Relation to Pattern Detection. Proceedings of the 12th IEEE International Conference on Image Processing 2005; 12(2):794-797.
  221. Tuch D.S., Salat D.H., Wisco J.J., Zaleta A.K., Hevelone N.D., Rosas H.D. Choice Reaction Time Performance Correlates with Diffusion Anisotropy in White Matter Pathways Supporting Visuospatial Attention. Proc Natl Acad Sci U S A. 2005 Aug 23;102(34):12212-7. PMID: 16103359. PMCID: PMC1189298.
  222. Ou W., Golland P. From Spatial Regularization to Anatomical Priors in fMRI Analysis. Inf Process Med Imaging. 2005;19:88-100. PMID: 17354687.
  223. Yang Y., Tannenbaum A., Giddens D. Knowledge-Based 3D Segmentation and Reconstruction of Coronary Arteries Using CT Images. Conf Proc IEEE Eng Med Biol Soc. 2004;3:1664-6. PMID: 17272022.

For the Reporting Interval (7/1/2012 - 6/30/2013)

Peer Review Publications

  1. Jones K.B., Datar M., Ravichandran S., Jin H., Jurrus E., Whitaker R., Capecchi M.R. Toward an Understanding of the Short Bone Phenotype Associated with Multiple Osteochondromas. J Orthop Res. 2013 Apr;31(4):651-7. PMID: 23192691.
  2. Lou Y., Niu T., Jia X., Vela P.A., Zhu L., Tannenbaum A.R. Joint CT/CBCT Deformable Registration and CBCT Enhancement for Cancer Radiotherapy. Med Image Anal. 2013 Apr;17(3):387-400. PMID: 23433756.
  3. Matsui J.T., Vaidya J.G., Johnson H.J., Magnotta V.A., Long J.D., Mills J.A., Lowe M.J., Sakaie K.E., Rao S.M., Smith M.M., Paulsen J.S. Diffusion Weighted Imaging of Prefrontal Cortex in Prodromal Huntington’s Disease. Hum Brain Mapp. 2013 Apr 9. PMID: 23568433.
  4. Paniagua B., Lyall A., Berger J-B., Vachet C., Hamer R.M., Woolson S., Lin W., Gilmore J., Styner M. Lateral Ventricle Morphology Analysis via Mean Latitude Axis. Proc Soc Photo Opt Instrum Eng. 2013 Mar 29;8672. PMID: 23606800. PMCID: PMC3630372.
  5. Egger J., Kapur T., Fedorov A., Pieper S., Miller J.V., Veeraraghavan H., Freisleben B., Golby A.J., Nimsky C., Kikinis R. GBM Volumetry using the 3D Slicer Medical Image Computing Platform. Sci Rep. 2013 Mar 4;3:1364. PMID: 23455483. PMCID: PMC3586703.
  6. Sadeghi N., Prastawa M., Fletcher P.T., Wolff J., Gilmore J.H., Gerig G. Regional Characterization of Longitudinal DT-MRI to Study White Matter Maturation of the Early Developing Brain. Neuroimage. 2013 Mar;68:236-47. PMID: 23235270.
  7. Elison J.T., Paterson S.J., Wolff J.J., Reznick J.S., Sasson N.J., Gu H., Botteron K.N., Dager S.R., Estes A.M., Evans A.C., Gerig G., Hazlett H.C., Schultz R.T., Styner M., Zwaigenbaum L., Piven J. White Matter Microstructure and Atypical Visual Orienting in 7-Month-Olds at Risk for Autism. Am J Psychiatry. 2013 Mar 20. PMID: 23511344.
  8. Verde A., Berger J-B., Gupta A., Farzinfar M., Kaiser A., Chanon V.W., Boettiger C., Johnson H., Matsui J., Sharma A., Goodlett C., Shi Y., Zhu H., Gerig G., Gouttard S., Vachet C., Styner M. UNC-Utah NA-MIC DTI framework: Atlas Based Fiber Tract Analysis with Application to a Study of Nicotine Smoking Addiction. SPIE Medical Imaging, 2013;8669:86692D–86692D–8.
  9. Asami T., Saito Y., Whitford T.J., Makris N., Niznikiewicz M., McCarley R.W., Shenton M.E., Kubicki M. Abnormalities of Middle Longitudinal Fascicle and Disorganization in Patients with Schizophrenia. Schizophr Res. 2013 Feb;143(2-3):253-9. PMID: 23290607.
  10. Farzinfar M., Li Y., Verde A.R., Oguz I., Gerig G., Styner M. DTI Quality Control Assessment via Error Estimation from Monte Carlo Simulations. SPIE Medical Imaging, 2013;8669:86692C–86692C.
  11. Nakhmani A., Tannenbaum A. A New Distance Measure Based on Generalized Image Normalized Cross-Correlation for Robust Video Tracking and Image Recognition. Pattern Recognit Lett. 2013 Feb 1;34(3):315-321. PMID: 23503649.
  12. McClure R.K., Styner M., Maltbie E., Lieberman J.A., Gouttard S., Gerig G., Shi X., Zhu H. Localized Differences in Caudate and Hippocampal Shape are Associated with Schizophrenia but not Antipsychotic Type. Psychiatry Res. 2013 Jan 30;211(1):1-10. PMID: 23142194.
  13. Kim S.H., Fonov V.S., Dietrich C., Vachet C., Hazlett H.C., Smith R.G., Graves M.M., Piven J., Gilmore J.H., Dager S.R., McKinstry R.C., Paterson S., Evans A.C., Collins D.L., Gerig G., Styner M. Adaptive Prior Probability and Spatial Temporal Intensity Change Estimation for Segmentation of The One-Year-Old Human Brain. J Neurosci Methods. 2013 Jan 15;212(1):43-55. PMID: 23032117. PMCID: PMC3513941.
  14. Solowij N., Walterfang M., Lubman D.I., Whittle S., Lorenzetti V., Styner M., Velakoulis D., Pantelis C., Yücel M. Alteration to Hippocampal Shape in Cannabis Users with and without Schizophrenia. Schizophr Res. 2013 Jan;143(1):179-84. PMID: 23201308.
  15. Short S.J., Elison J.T., Goldman B.D., Styner M., Gu H., Connelly M., Maltbie E., Woolson S., Lin W., Gerig G., Reznick J.S., Gilmore J.H. Associations between White Matter Microstructure and Infants' Working Memory. Neuroimage. 2013 Jan 1;64:156-66. PMID: 22989623.
  16. Shi Y., Short S.J., Knickmeyer R.C., Wang J., Coe C.L., Niethammer M., Gilmore J.H., Zhu H., Styner M. Diffusion Tensor Imaging-based Characterization of Brain Neurodevelopment in Primates. Cereb Cortex. 2013 Jan;23(1):36-48. PMID: 22275483. PMCID: PMC3513950.
  17. Skup M., Zhu H., Zhang H. Multiscale Adaptive Marginal Analysis of Longitudinal Neuroimaging Data with Time-varying Covariates. Biometrics. 2012 Dec;68(4):1083-92. PMID: 22551084.
  18. Dougherty M.K., Gu H., Bizzell J., Ramsey S., Gerig G., Perkins D.O., Belger A. Differences in Subcortical Structures in Young Adolescents at Familial Risk for Schizophrenia: A Preliminary Study. Psychiatry Res. 2012 Nov 30;204(2-3):68-74. PMID: 23146250. PMCID: PMC3518556.
  19. Kapur T., Egger J., Damato A., Schmidt E.J., Viswanathan A.N. 3-T MR-guided Brachytherapy for Gynecologic Malignancies. Magn Reson Imaging. 2012 Nov;30(9):1279-90. PMID: 22898699. PMCID: PMC3468320.
  20. Du G., Lewis M.M., Sen S., Wang J., Shaffer M.L., Styner M., Yang Q.X., Huang X. Imaging Nigral Pathology and Clinical Progression in Parkinson's Disease. Mov Disord. 2012 Nov;27(13):1636-43. PMID: 23008179. PMCID: PMC3510346.
  21. Gao Y., Li Z., Lin Z., Zhu L., Tannenbaum A., Bouix S., Wong C.P. Automated Dispersion and Orientation Analysis for Carbon Nanotube Reinforced Polymer Composites. Nanotechnology. 2012 Nov 2;23(43):435706. PMID: 23060008.
  22. Fedorov A., Beichel R., Kalpathy-Cramer J., Finet J., Fillion-Robin J-C., Pujol S., Bauer C., Jennings D., Fennessy F., Sonka M., Buatti J., Aylward S.R., Miller J.V., Pieper S., Kikinis R. 3D Slicer as an Image Computing Platform for the Quantitative Imaging Network. Magn Reson Imaging. 2012 Nov;30(9):1323-41. PMID: 22770690.
  23. Shusharina N., Sharp G. Image Registration using Radial Basis Functions with Adaptive Radius. Med Phys. 2012 Nov;39(11):6542-9. PMID: 23127049. PMCID: PMC3482254.
  24. Irimia A., Wang B., Aylward S.R., Prastawa M.W., Pace D.F., Gerig G., Hovda D.A., Kikinis R., Vespa P.M., Van Horn J.D. Neuroimaging of Structural Pathology and Connectomics in Traumatic Brain Injury: Toward Personalized Outcome Prediction. NeuroImage: Clinical. 2012; 1(1):1-17.
  25. Kikinis Z., Asami T., Bouix S., Finn C.T., Ballinger T., Tworog-Dube E., Kucherlapati R., Kikinis R., Shenton M.E., Kubicki M. Reduced Fractional Anisotropy and Axial Diffusivity in White Matter in 22q11.2 Deletion Syndrome: A Pilot Study. Schizophr Res. 2012 Oct;141(1):35-9. PMID: 22863550. PMCID: PMC3462006.
  26. Vul E., Lashkari D., Hsieh P-J., Golland P., Kanwisher N. Data-Driven Functional Clustering Reveals Dominance of Face, Place, and Body Selectivity in the Ventral Visual Pathway. J Neurophysiol. 2012 Oct;108(8):2306-22. PMID: 22745467.
  27. Kwitt R., Vasconcelos N., Rasiwasia N., Uhl A., Davis B., Häfner M., Wrba F. Endoscopic Image Analysis in Semantic Space. Med Image Anal. 2012 Oct;16(7):1415-22. PMID: 22717411.
  28. Fedorov A., Tuncali K., Fennessy F.M., Tokuda J., Hata N., Wells III W.M., Kikinis R., Tempany C.M. Image Registration for Targeted MRI-guided Transperineal Prostate Biopsy. J Magn Reson Imaging. 2012 Oct;36(4):987-92. PMID: 22645031. PMCID: PMC3434292.
  29. Hua Z., Dunson D.B., Gilmore J.H., Styner M., Zhu H. Semiparametric Bayesian Local Functional Models for Diffusion Tensor Tract Statistics. Neuroimage. 2012 Oct 15;63(1):460-74. PMID: 22732565.
  30. Irimia A., Van Horn J.D. The Structural, Connectomic and Network Covariance of the Human Brain. Neuroimage. 2012 Oct 29;66C:489-499. PMID: 23116816.
  31. Gao Y., Rathi Y., Bouix S., Tannenbaum A. Filtering in the diffeomorphism group and the registration of point sets. IEEE Trans Image Process. 2012 Oct;21(10):4383-96. PMID: 22752129.
  32. Rosenberger G., Nestor P.G., Oh J.S., Levitt J.J., Kindleman G., Bouix S., Fitzsimmons J., Niznikiewicz M., Westin C-F., Kikinis R., McCarley R.W., Shenton M.E., Kubicki M. Anterior Limb of the Internal Capsule in Schizophrenia: a Diffusion Tensor Tractography Study. Brain Imaging Behav. 2012 Sep;6(3):417-25. PMID: 22415192.
  33. Egger J., Tokuda J., Chauvin L., Freisleben B., Nimsky C., Kapur T., Wells III W.M. Integration of the OpenIGTLink Network Protocol for Image-guided Therapy with the Medical Platform MeVisLab. Int J Med Robot. 2012 Sep;8(3):282-90. PMID: 22374845.
  34. Gao Y., Kikinis R., Bouix S., Shenton M., Tannenbaum A. A 3D Interactive Multi-object Segmentation Tool using Local Robust Statistics Driven Active Contours. Med Image Anal. 2012 Aug;16(6):1216-27. PMID: 22831773. PMCID: PMC3443290.
  35. Venkataraman A., Whitford T.J., Westin C-F., Golland P., Kubicki M. Whole Brain Resting State Functional Connectivity Abnormalities in Schizophrenia. Schizophr Res. 2012 Aug;139(1-3):7-12. PMID: 22633528. PMCID: PMC3393792.
  36. Lyall A.E., Woolson S., Wolfe H.M., Goldman B.D., Reznick J.S., Hamer R.M., Lin W., Styner M., Gerig G., Gilmore J.H. Prenatal Isolated Mild Ventriculomegaly is Associated with Persistent Ventricle Enlargement at Ages 1 and 2. Early Hum Dev. 2012 Aug;88(8):691-8. PMID: 22445211. PMCID: PMC3386468.
  37. Geng X., Gouttard S., Sharma A., Gu H., Styner M., Lind W., Gerig G., Gilmore J.H. Quantitative Tract-Based White Matter Development from Birth to Age Two Years. Neuroimage. 2012 Jul 2;61(3):542-57. PMID: 22510254. PMCID: PMC3358435.
  38. Nakhmani A., Tannenbaum A. Self-Crossing Detection and Location for Parametric Active Contours. IEEE Trans Image Process. 2012 Jul;21(7):3150-6. PMID: 22374361.
  39. Guo R., Zhu H., Chow S-M., Ibrahim J.G. Bayesian Lasso for Semiparametric Structural Equation Models. Biometrics. 2012 Jun;68(2):567-77. PMID: 22376150. PMCID: PMC3371320.
  40. Wolff J.J., Gu H., Gerig G., Elison J.T., Styner M., Gouttard S., Botteron K.N., Dager S.R., Dawson G., Estes A.M., Evans A.C., Hazlett H.C., Kostopoulos P., McKinstry R.C., Paterson S.J., Schultz R.T., Zwaigenbaum L., Piven J. Differences in White Matter Fiber Tract Development Present from 6 to 24 Months in Infants with Autism. Am J Psychiatry. 2012 Jun 1;169(6):589-600. PMID: 22362397.
  41. Hazlett H.C., Gu H., McKinstry R.C., Shaw D.W.W., Botteron K.N., Dager S.R., Styner M., Vachet C., Gerig G., Paterson S.J., Schultz R.T., Estes A.M., Evans A.C., Piven J. Brain Volume Findings in 6-month-old Infants at High Familial Risk for Autism. Am J Psychiatry. 2012 Jun;169(6):601-8. PMID: 22684595.
  42. Egger J., Freisleben B., Nimsky C., Kapur T. Template-Cut: A Pattern-Based Segmentation Paradigm. Sci Rep. 2012;2:420:1-8. PMID: 22639728. PMCID: PMC3359527.
  43. Li Y., Gilmore J.H., Wang J., Styner M., Lin W., Zhu H. TwinMARM: Two-stage Multiscale Adaptive Regression Methods for Twin Neuroimaging Data. IEEE Trans Med Imaging. 2012 May;31(5):1100-12. PMID: 22287236. PMCID: PMC3380373.
  44. Van Horn J.D., Irimia A., Torgerson C.M., Chambers M.C., Kikinis R., Toga A.W. Mapping Connectivity Damage in the Case of Phineas Gage. PLoS ONE 2012. 7(5): e37454. PMID: 22616011. PMCID: PMC3353935.
  45. Irimia A., Chambers M.C., Torgerson C.M., Van Horn J.D. Circular Representation of Human Cortical Networks for Subject and Population-level Connectomic Visualization. Neuroimage. 2012 Apr 2;60(2):1340-51. PMID: 22305988. PMCID: PMC3594415.
  46. Wählby C., Kamentsky L., Liu Z.H., Riklin-Raviv T., Conery A.L., O'Rourke E.J., Sokolnicki K.L., Visvikis O., Ljosa V., Irazoqui J.E., Golland P., Ruvkun G., Ausubel F.M., Carpenter A.E. An Image Analysis Toolbox for High-throughput C. Elegans Assays. Nat Methods. 2012 Apr 22;9(7):714-6. PMID: 22522656. PMCID: PMC3433711.
  47. Ong D., Walterfang M., Malhi G.S., Styner M., Velakoulis D., Pantelis C. Size and Shape of the Caudate Nucleus in Individuals with Bipolar Affective Disorder. Aust N Z J Psychiatry. 2012 Apr;46(4):340-51. PMID: 22368240. PMCID: PMC3328643.
  48. Gholami B., Bailey J.M., Haddad W.M., Tannenbaum A.R. Clinical Decision Support and Closed-Loop Control for Cardiopulmonary Management and Intensive Care Unit Sedation Using Expert Systems. IEEE Trans Control Syst Technol. 2012 March ; 20(5): 1343–1350. PMCID: PMC3633236.
  49. Shusharina N., Sharp G.C. Analytic Regularization for Landmark-based Image Registration. Phys Med Biol. 2012 Mar 21;57(6):1477-98. PMID: 22390947.

Conference Reports

  1. Sadeghi N., Prastawa M.W., Fletcher P.T., Vachet C., Wang B., Gilmore J., Gerig G. Multivariate Modeling of Longitudinal MRI in Early Brain Development with Confidence Measures. Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro 2013;
  2. Wang B., Prastawa M., Irimia A., Chambers M.C., Sadeghi N., Vespa P.M., Van Horn J.D., Gerig G. Analyzing Imaging Biomarkers for Traumatic Brain Injury using 4D Modeling of Longitudinal MRI. Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro 2013;
  3. Vardhan A., Prastawa M., Sharma A., Piven J., Gerig G. Modeling Longitudinal MRI Changes in Populations Using a Localized, Information-Theoretic Measure of Contrast. Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro 2013;
  4. Sharma A., Fletcher P.T., Gilmore J.H., Escolar M.L., Vardhan A., Gupta A., Styner M., Gerig G. Spatiotemporal Modeling of Discrete-Time Distribution-Valued Data Applied to DTI Tract Evolution in Infant Neurodevelopment. Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro 2013;
  5. Ghayoor A., Vaidya J.G., Johnson H.J. Development of a Novel Constellation Based Landmark Detection Algorithm. Proc. SPIE Medical Imaging, 2013;8669:86693F-6.
  6. Matsui J., Kim E.Y., Magnotta V., Johnson H. Derivation of Fiber Tracts Representing the Corticospinal Tract using Anatomical Landmarks. Int Conf Med Image Comput Comput Assist Interv. 2012;15(WS). DTI Tractography Challenge Workshop.
  7. Shackleford J.A., Kandasamy N., Sharp G.C. Accelerating MI-based B-spline Registration using CUDA Enabled GPUs. Int Conf Med Image Comput Comput Assist Interv. 2012;15(WS). Workshop on Data- and Compute-Intensive Clinical and Translational Imaging Applications.
  8. Shackleford J.A., Shusharina N., Verberg J., Warmerdam G., Winey B., Neuner M., Steininger P., Arbisser A., Golland P., Lou Y., Paganelli C., Peroni M., Riboldi M., Baroni G., Zaffino P., Spadea M.F., Apte A., Saleh Z., Deasy J.O., Mori S., Kandasamy N., Sharp G.C. Plastimatch 1.6 – Current Capabilities and Future Directions. Int Conf Med Image Comput Comput Assist Interv. 2012;15(WS). Workshop on Image-Guidance and Multimodal Dose Planning in Radiation Therapy.
  9. Durrleman S., Prastawa M., Korenberg J.R., Joshi S., Trouvé A., Gerig G. Topology Preserving Atlas Construction from Shape Data without Correspondence using Sparse Parameters. Int Conf Med Image Comput Comput Assist Interv. 2012;15(Pt 3):223-30. PMID: 23286134.
  10. Awate S., Zhu P., Whitaker A.R.T. How Many Templates Does It Take for a Good Segmentation? Error Analysis in Multiatlas Segmentation as a Function of Database Size. Int Conf Med Image Comput Comput Assist Interv. 2012;15(Pt 2):103-114.
  11. Csapo I., Davis B., Shi Y., Sanchez M., Styner M., Niethammer M. Longitudinal Image Registration with Non-uniform Appearance Change. Int Conf Med Image Comput Comput Assist Interv. 2012;15(Pt 3):280-8. PMID: 23286141. PMCID: PMC3584325.
  12. Schultz T. Learning a Reliable Estimate of the Number of Fiber Directions in Diffusion MRI. Int Conf Med Image Comput Comput Assist Interv. 2012;15(Pt 3):493-500. PMID: 23286167.
  13. Venkataraman A., Kubicki M., Golland P. From Brain Connectivity Models to Identifying Foci of a Neurological Disorder. Int Conf Med Image Comput Comput Assist Interv. 2012;15(Pt 1):715-22. PMID: 23285615. PMCID: PMC3539203.
  14. Liu W., Awate S.P., Fletcher P.T. Group Analysis of Resting-state fMRI by Hierarchical Markov Random Fields. Int Conf Med Image Comput Comput Assist Interv. 2012;15(Pt 3):189-96. PMID: 23286130.
  15. Fishbaugh J., Prastawa M., Durrleman S., Piven J., Gerig G. Analysis of Longitudinal Shape Variability via Subject Specific Growth Modeling. Int Conf Med Image Comput Comput Assist Interv. 2012;15(Pt 1):731-8. PMID: 23285617.
  16. Wachinger C., Golland P. Spectral Label Fusion. Int Conf Med Image Comput Comput Assist Interv. 2012;15(Pt 3):410-17. PMID: 23286157. PMCID: PMC3539206.
  17. Hong Y., Joshi S., Sanchez M., Styner M., Niethammer M. Metamorphic Geodesic Regression. Int Conf Med Image Comput Comput Assist Interv. 2012;15(Pt 3):197-205. PMID: 23286131. PMCID: PMC3584322.
  18. Shackleford J.A., Yang Q., Lourenço A.M., Shusharina N., Kandasamy N., Sharp G.C. Analytic Regularization of Uniform Cubic B-Spline Deformation Fields. Int Conf Med Image Comput Comput Assist Interv. 2012;15(Pt 2):122-9. PMID: 23286040.
  19. Gholami B., Norton I., Tannenbaum A.R., Agar N.Y.R. Recursive Feature Elimination for Brain Tumor Classification using Desorption Electrospray Ionization Mass Spectrometry Imaging. Conf Proc IEEE Eng Med Biol Soc. 2012;2012:5258-61. PMID: 23367115.
  20. Zhu L., Gao Y., Yezzi A., MacLeod R., Cates J., Tannenbaum A. Automatic Segmentation of the left Atrium from MRI Images using Salient Feature and Contour Evolution. Conf Proc IEEE Eng Med Biol Soc. 2012;2012:3211-4. PMID: 23366609.
  21. Wang B., Prastawa M., Awate S.P., Irimia A., Chambers M.C., Vespa P.M., Van Horn J.D., Gerig G. Segmentation of Serial MRI of TBI patients using Personalized Atlas Construction and Topological Change Estimation. Proceedings of the 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro 2012; 1152-1155.
  22. Farzinfar M., Dietrich C., Smith R., Li Y., Gupta A., Liu Z., Styner M. Entropy Based DTI Quality Control via Regional Orientation Distribution. Proceedings of the 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro 2012; 22–26. PMID: 23595508. PMCID: PMC3625986.
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