Projects:RegistrationDocumentation

Back to ARRA main page

Use Case Library

• Registration Case Library
• Use Case Sharing Advertisment Page
• Notes & concepts about the Registration Case Library

Development Efforts

• Notes & ideas for GUI and algorithm implementation. Discussion platform with the developer group
• Parameter Exploration
• Result Evaluation & Visualization
• link to Kitware Wiki on developer efforts

Reference Manual

• The reference manual will contain detailed descriptions of each parameter and each control element within the slicer registration module. The description should help the user understand what exactly that function/parameter does and if/how useful it will be for their specific registration problem.
• Each entry will have one short description (that could also serve as tooltip) and one longer, more technical explanation.
• Preferred formats: Slicer Wiki, maybe PDF, cross-linking required
• Draft Registration Reference Manual

User Manuals & Tutorials

• The user manual will contain a systematic overview of registration functionality within 3DSlicer. formats: Slicer Wiki, PowerPoint.
  • Draft Registration User Manual
  • notes and documentation resources
• Tutorials will be case oriented and always demonstrate a particular task or feature
  • Video Tutorials: showcase of specific workflow
  • Background Tutorials, explaining the basics of registration, formats: PowerPoint. Minimal understanding of the inner workings of a registration optimization algorithm is essential to understand and judge the results obtained and obtainable.

Contact

• if there is anything you think would be of help to the 3DSlicer registration user, be that documentation, examples or features, we'd love to hear about it:
  • any questions/concerns are welcome on the slicer user mailing list: mailto:slicer-users@bwh.harvard.edu
  • particular questions/concerns re. these pages or Registration Documentation drop a line to mailto:meier@bwh.harvard.edu

---

Links

• Registration Summit Aug'09
• 2009_Summer_Project_Week_Slicer3_registration
• Slicer Documentation 3.5
• Bug Tracker
• AHM_2010
• AHM 2010 Project Week: Registration Case Library Project Page
• Slicer Logo & Communication Guide
• NAMIC registration:
• Contact: Dominik Meier : mailto:meier@bwh.harvard.edu

Bundled Registration and Tests

• http://www.na-mic.org/Wiki/index.php/Projects:DBP2:Harvard:Registration_Documentation
• http://www.na-mic.org/Wiki/index.php/MeningiomaMRIRegistrationStudy#Limitations_of_the_Slicer_registration_tools
• Vervet head MRI atlas-to-subject registration
• Head MRI registration between different timepoints (human subjects, changing pathology present)
• Side by side comparisons in slicer2 and slicer3 with data and images
• http://mindboggle.info/papers/index.php
• testing on the Vanderbuild database: RIRE
• ITK Registration Optimization Sets