Difference between revisions of "2009 Summer Project Week Extension Manager"
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* Add functionality to the Slicer3 extension manager | * Add functionality to the Slicer3 extension manager | ||
* Help developers make their modules work as extensions | * Help developers make their modules work as extensions | ||
| − | + | * Test extension implementation to generate feature/bug todo list. | |
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<h3>Progress</h3> | <h3>Progress</h3> | ||
| − | + | * Added Fuzzy Segmentation and Lesion Segmentation extensions to the SVN repository | |
| + | * Demoed extension manager to developers and explained the process to make existing code available as a Slicer3 extension | ||
| + | * Meeting to discuss feature requests for to enable the extension manager to support a wider variety of code | ||
| + | * [[Media:Proposed-NAMIC-XML-CLI-Syntax-v0-2.doc|Proposed Changes to Extension Manager/CLI Interface]] | ||
</div> | </div> | ||
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* [[AHM2009:NITRC_and_Slicer| January 2009 project description]] | * [[AHM2009:NITRC_and_Slicer| January 2009 project description]] | ||
| − | * [ | + | * [https://www.slicer.org/wiki/Slicer3:Extensions format of .s3ext file] |
* [http://ext.slicer.org/ext/Slicer-3-4/9738-darwin-x86/ Example extension repository] | * [http://ext.slicer.org/ext/Slicer-3-4/9738-darwin-x86/ Example extension repository] | ||
| + | |||
| + | == Possible Extension Projects (Summer 2009) == | ||
| + | #[[2009_Summer_Project_Week_Lupus_Lesion_Segmentation |Lupus Lesion Segmentation]] (Jeremy Bockholt MRN) | ||
| + | #[[2009_Summer_Project_Week_WML_SEgmentation |White Matter Lesion segmentation]] (Minjeong Kim UNC) | ||
| + | #[[2009_Summer_Project_Week_Skull_Stripping | Skull Stripping]] (Snehasish Roy JHU) | ||
| + | #[[2009_Summer_Project_Week_TubularSurfaceSeg|Tubular Surface Segmentation in Slicer]] (Vandana Mohan, Georgia Tech) | ||
| + | #[[2009_Summer_Project_Week_Slicer3_Cortical_Thickness_Pipeline|Cortical Thickness Pipeline]] (Clement Vachet UNC) | ||
| + | #[[2009_Summer_Project_Week_Automatic_Brain_MRI_Pipeline|Automatic brain MRI processing pipeline]] (Marcel Prastawa Utah) | ||
| + | #[[2009_Summer_Project_Week_Spherical_Mesh_Diffeomorphic_Demons_Registration |Spherical Mesh Diffeomorphic Demons Registration]] (Luis Ibanez Kitware) | ||
| + | #[[2009_Summer_Project_Week_HAMMER_Registration | HAMMER Registration]] (Guorong Wu UNC) | ||
| + | #[[2009_Summer_Project_Week_Meningioma_growth_simulation|Meningioma growth simulation]] (Andrey Fedorov BWH) | ||
| + | # [[BSpline Registration in Slicer3 | BSpline Registration in Slicer3]] (Samuel Gerber Utah) | ||
| + | #[[2009_Summer_project_week_prostate_registration|Prostate Registration Slicer Module]] (Yi Gao, Georgia Tech) | ||
| + | # [[EPI Correction in Slicer3 | EPI Correction in Slicer3]] (Ran Tao Utah) | ||
| + | #[[2009_Summer_Project_Week_Slicer3_Fibre_Dispersion|Slicer module for the computation of fibre dispersion and curving measures]] (Peter Savadjiev BWH) | ||
| + | #[[2009_Summer_Project_Week_DWI_/_DTI_QC_and_Prepare_Tool:_DTIPrep | DWI/DTI QC and Preparation Tool: DTIPrep]] (Zhexing Liu UNC) | ||
| + | #[[2009_Summer_Project_Week_Hageman_FMTractography | Fluid mechanics tractography and visualization]] (Nathan Hageman UCLA) | ||
| + | #[[2009_Summer_Project_Week_Transrectal_Prostate_biopsy|Transrectal Prostate Biopsy]] (Andras Lasso Queen's) | ||
| + | #[[2009_Summer_Project_Week_Prostate_Robotics |Prostate Robotics]] (Junichi Tokuda BWH) | ||
| + | #[[2009_Summer_Project_Week_Slicer|Integration of Flexible Surgical Instrument Modeling and Virtual Catheter with Slicer]] (Jayender Jagadeesan BWH) | ||
| + | #[[2009_Summer_Project_Week_MRSI-Module|MRSI Module]] (Bjoern Menze MIT) | ||
| + | #[[2009_Summer_Project_Week_4D_Imaging| 4D Imaging (Perfusion, Cardiac, etc.) ]] (Junichi Tokuda BWH) | ||
| + | #[[2009_Summer_Project_Week_4D_Gated_US_In_Slicer |Gated 4D ultrasound reconstruction for Slicer3]] (Danielle Pace Robarts Institute) | ||
| + | # [[Plug-In 3D Viewer based on XIP|Plug-in 3D Viewer based on XIP]] (Lining Yang Siemens Research) | ||
| + | # [[Summer2009:Extension of the Command Line XML Syntax/Interface | Extension of the Command Line XML Syntax/Interface]] (Bennett Landman) | ||
</div> | </div> | ||
Latest revision as of 18:07, 10 July 2017
Home < 2009 Summer Project Week Extension Manager
Key Investigators
Katie Hayes, BWH, Steve Pieper, Terry Lorber
Objectives
- Add functionality to the Slicer3 extension manager
- Help developers make their modules work as extensions
- Test extension implementation to generate feature/bug todo list.
Approach, Plan
- Information on using extensions will be given on Tuesday at 10:00. (Slides)
- Katie, Terry, and Steve will be available to work with developers to test build.
Progress
- Added Fuzzy Segmentation and Lesion Segmentation extensions to the SVN repository
- Demoed extension manager to developers and explained the process to make existing code available as a Slicer3 extension
- Meeting to discuss feature requests for to enable the extension manager to support a wider variety of code
- Proposed Changes to Extension Manager/CLI Interface
References
Possible Extension Projects (Summer 2009)
- Lupus Lesion Segmentation (Jeremy Bockholt MRN)
- White Matter Lesion segmentation (Minjeong Kim UNC)
- Skull Stripping (Snehasish Roy JHU)
- Tubular Surface Segmentation in Slicer (Vandana Mohan, Georgia Tech)
- Cortical Thickness Pipeline (Clement Vachet UNC)
- Automatic brain MRI processing pipeline (Marcel Prastawa Utah)
- Spherical Mesh Diffeomorphic Demons Registration (Luis Ibanez Kitware)
- HAMMER Registration (Guorong Wu UNC)
- Meningioma growth simulation (Andrey Fedorov BWH)
- BSpline Registration in Slicer3 (Samuel Gerber Utah)
- Prostate Registration Slicer Module (Yi Gao, Georgia Tech)
- EPI Correction in Slicer3 (Ran Tao Utah)
- Slicer module for the computation of fibre dispersion and curving measures (Peter Savadjiev BWH)
- DWI/DTI QC and Preparation Tool: DTIPrep (Zhexing Liu UNC)
- Fluid mechanics tractography and visualization (Nathan Hageman UCLA)
- Transrectal Prostate Biopsy (Andras Lasso Queen's)
- Prostate Robotics (Junichi Tokuda BWH)
- Integration of Flexible Surgical Instrument Modeling and Virtual Catheter with Slicer (Jayender Jagadeesan BWH)
- MRSI Module (Bjoern Menze MIT)
- 4D Imaging (Perfusion, Cardiac, etc.) (Junichi Tokuda BWH)
- Gated 4D ultrasound reconstruction for Slicer3 (Danielle Pace Robarts Institute)
- Plug-in 3D Viewer based on XIP (Lining Yang Siemens Research)
- Extension of the Command Line XML Syntax/Interface (Bennett Landman)
