Difference between revisions of "Iowa2014"

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==Logistics==
 
==Logistics==
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{| border="00" cellpadding="8" cellspacing="0"
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|-
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| rowspan="2" align="left"|
 
*Date: November 18-19, 2014
 
*Date: November 18-19, 2014
−
*Location: Iowa City, Iowa
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*Location: Hardin Library for Health Sciences, Info Commons West, U. of Iowa, Iowa City, Iowa
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 +
[[Media:2014-Slicer-Iowa.pdf|Event flyer]]
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This event is co-sponsored by [http://biomed-imaging.uiowa.edu/ the Iowa Institute for Biomedical Imaging], NIH [http://nac.spl.harvard.edu/ Neuroimage Analysis Center (NAC)] and [http://qiicr.og Quantitative Image Informatics for Cancer Research (QIICR)] projects.
 +
 
 +
The registration fee is $50. Space is limited, please register online at https://www.regonline.com/builder/site/Default.aspx?EventID=1632476
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 +
'''The registration deadline is November 11, 2014!'''
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| style="background: #ebeced" colspan="2" align="center"|
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|-
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| style="background: #ebeced"| [[Image:2014-Slicer-Iowa.png|350px]]
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|}
  
 
==Local Hosts==
 
==Local Hosts==
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* Ethan Ulrich
 
* Ethan Ulrich
 
* Christian Bauer
 
* Christian Bauer
−
* TBD from Hans' group
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* Ipek Oguz
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* Hans Johnson
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* David Welch
  
 
==Training Faculty==
 
==Training Faculty==
 
* [http://www.spl.harvard.edu/~kikinis Ron Kikinis, M.D.], Surgical Planning Laboratory, Harvard Medical School, Boston, MA
 
* [http://www.spl.harvard.edu/~kikinis Ron Kikinis, M.D.], Surgical Planning Laboratory, Harvard Medical School, Boston, MA
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* [http://www.spl.harvard.edu/~spujol Sonia Pujol, Ph.D.], Surgical Planning Laboratory, Harvard Medical School, Boston, MA
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* [http://www.spl.harvard.edu/~fedorov Andrey Fedorov, Ph.D.], Surgical Planning Laboratory, Harvard Medical School, Boston, MA
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* Andrey Fedorov, Ph.D., Surgical Planning Laboratory, Harvard Medical School, Boston, MA
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* [http://www.dclunie.com/ David Clunie], PixelMed Publishing
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[[File:Iowa-Slicer-Workshop-2014-pic1.jpg|350px]]
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[[File:Iowa-Slicer-Workshop-2014-pic2.jpg|350px]]
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[[File:Iowa-Slicer-Workshop-2014-pic3.jpg|250px]]
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[[File:Iowa-Slicer-Workshop-2014-pic4.jpg|350px]]
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[[File:Iowa-Slicer-Workshop-2014-pic5.jpg|350px]]
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[[File:Iowa-Slicer-Workshop-2014-pic6.jpg|350px]]
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[[File:Iowa-Slicer-Workshop-2014-pic7.jpg|350px]]
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[[File:Iowa-Slicer-Workshop-2014-pic8.jpg|350px]]
  
 
== Agenda  ==
 
== Agenda  ==
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| style="width:90%" colspan="2"| '''Tuesday, November 18, 2014'''
 
| style="width:90%" colspan="2"| '''Tuesday, November 18, 2014'''
 
|-
 
|-
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| style="background:#efefef; color:#663300"| '''9:15-9:30 AM'''
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| style="background:#efefef; color:#663300"| '''8:25 AM'''
 
| style="background:#FBF7BB; color:#522200" colspan="2"| Opening Remarks and Introduction (Milan Sonka, Reinhard Beichel)
 
| style="background:#FBF7BB; color:#522200" colspan="2"| Opening Remarks and Introduction (Milan Sonka, Reinhard Beichel)
 
|-
 
|-
−
| style="background:#efefef; color:#663300"| '''9:30-10:00 AM'''
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| style="background:#efefef; color:#663300"| '''8:30 AM'''
−
| style="background:#FBF7BB; color:#522200" colspan="2"| [[media:2012-03-20-Iowa.pptx|3D Slicer, a Platform for Medical Image Computing]]  (Ron Kikinis)
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| style="background:#FBF7BB; color:#522200" colspan="2"| [[media:20141118-Kikinis-3DSlicer.pptx|3D Slicer, a Platform for Medical Image Computing]]  (Ron Kikinis)
 
|-
 
|-
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| style="background:#efefef; color:#663300"| '''10:00-11:00 AM'''
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| style="background:#efefef; color:#663300"| '''9:00 AM'''
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| style="background:#FBF7BB; color:#522200" colspan="2"| [[media:DataLoadingAndVisualizationSlicer4_SoniaPujol.pdf |‎ Data Loading and 3D Visualization (Sonia Pujol)]]
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| style="background:#FBF7BB; color:#522200" colspan="2"| [[media:3DDataLoadingandVisualization_SoniaPujol_slicer4.4.pdf‎  |‎ Hands-on Session 1: Data Loading and 3D Visualization (Andrey Fedorov for Sonia Pujol)]]
 
|-
 
|-
−
| style="background:#efefef; color:#663300"| '''11:00-11:15 AM'''
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| style="background:#efefef; color:#663300"| '''10:00 AM'''
 
| style="background:#FBF7BB; color:#522200" colspan="2"| Coffee-break
 
| style="background:#FBF7BB; color:#522200" colspan="2"| Coffee-break
 
|-
 
|-
−
| style="background:#efefef; color:#663300"| '''11:00-12:15 PM'''
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| style="background:#efefef; color:#663300"| '''10:15 PM'''
−
| style="background:#FBF7BB; color:#522200" colspan="2"| Tutorial on Python programming in 3D Slicer
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| style="background:#FBF7BB; color:#522200" colspan="2"| Hands-on Session 2: Contributing extension to 3D Slicer - Part 1 (Andrey Fedorov) [http://goo.gl/IP4cdg slides]
 
|-
 
|-
−
| style="background:#efefef; color:#663300"| '''12:15-1:45 PM'''
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| style="background:#efefef; color:#663300"| '''11:15 PM'''
−
| style="background:#F5EBD6; color:#522200" colspan="2"| Lunch
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| style="background:#F5EBD6; color:#522200" colspan="2"| Lunch (will be provided)
 
|-
 
|-
−
| style="background:#efefef; color:#663300"| '''1:45-3:00 PM'''
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| style="background:#efefef; color:#663300"| '''12:15 PM'''
−
| style="background:#FBF7BB; color:#522200" colspan="2"| Hands-on session: the process of creating 3D Slicer extension
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| style="background:#FBF7BB; color:#522200" colspan="2"| Hands-on Session 3: Contributing extension to 3D Slicer - Part 2 (Andrey Fedorov) [http://goo.gl/IP4cdg slides]
 
|-
 
|-
−
| style="background:#efefef; color:#663300"| '''3:00-3:30 PM'''
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| style="background:#efefef; color:#663300"| '''2:00 PM'''
−
| style="background:#F5EBD6; color:#522200" colspan="2"| Coffee Break
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| style="background:#F5EBD6; color:#522200" colspan="2"| Break
 
|-
 
|-
−
| style="background:#efefef; color:#663300"| '''3:30-5:00 PM'''
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| style="background:#efefef; color:#663300"| '''2:30 PM'''
−
| style="background:#FBF7BB; color:#522200" colspan="2"| QIICR overview and 1st year progress (Andrey Fedorov)
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| style="background:#FBF7BB; color:#522200" colspan="2"| DICOM Support for Quantitative Imaging (David Clunie) [[media:20141118 Iowa Clunie DICOMSupportForQuantitativeImaging.pptx|slides]]
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|-
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| style="background:#efefef; color:#663300"| '''3:30 PM'''
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| style="background:#FBF7BB; color:#522200" colspan="2"| QIICR: DICOM for quantitative imaging research in 3D Slicer (Andrey Fedorov) [https://zenodo.org/record/16847 slides]
 
|-
 
|-
 
| style="background:#FFFFFF; height:35px" colspan="3" |  
 
| style="background:#FFFFFF; height:35px" colspan="3" |  
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| style="background:#efefef; color:#663300"| '''09:30-12:00 PM'''
 
| style="background:#efefef; color:#663300"| '''09:30-12:00 PM'''
 
| style="background:#FBF7BB; color:#522200" colspan="2"| QIICR meetings (ad hoc)
 
| style="background:#FBF7BB; color:#522200" colspan="2"| QIICR meetings (ad hoc)
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|
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|-
 
|}
 
|}
  
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==Potential topics (TBD based on Iowa needs and audience)==
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==Datasets==
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* tutorial on Python programming in Slicer (current tutorial materials would need to be updated)
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−
* review the process of extension creation, testing
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* [[media:3DVisualizationData.zip | Dataset1: 3DVisualizationDataset.zip]]
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* session about DICOM: what capabilities are in the scope of QIICR, what tools are ready, what tools are coming, hands-on demos
 

Latest revision as of 00:21, 15 April 2015

Home < Iowa2014

Logistics

  • Date: November 18-19, 2014
  • Location: Hardin Library for Health Sciences, Info Commons West, U. of Iowa, Iowa City, Iowa

Event flyer

This event is co-sponsored by the Iowa Institute for Biomedical Imaging, NIH Neuroimage Analysis Center (NAC) and Quantitative Image Informatics for Cancer Research (QIICR) projects.

The registration fee is $50. Space is limited, please register online at https://www.regonline.com/builder/site/Default.aspx?EventID=1632476

The registration deadline is November 11, 2014!

2014-Slicer-Iowa.png

Local Hosts

  • Milan Sonka, Ph.D., University of Iowa, IA
  • Reinhard Beichel, Ph.D., University of Iowa, IA

Supporting personnel at Iowa:

  • Ethan Ulrich
  • Christian Bauer
  • Ipek Oguz
  • Hans Johnson
  • David Welch

Training Faculty

Iowa-Slicer-Workshop-2014-pic1.jpg Iowa-Slicer-Workshop-2014-pic2.jpg Iowa-Slicer-Workshop-2014-pic3.jpg Iowa-Slicer-Workshop-2014-pic4.jpg Iowa-Slicer-Workshop-2014-pic5.jpg Iowa-Slicer-Workshop-2014-pic6.jpg Iowa-Slicer-Workshop-2014-pic7.jpg Iowa-Slicer-Workshop-2014-pic8.jpg

Agenda

Time Tuesday, November 18, 2014
8:25 AM Opening Remarks and Introduction (Milan Sonka, Reinhard Beichel)
8:30 AM 3D Slicer, a Platform for Medical Image Computing (Ron Kikinis)
9:00 AM ‎ Hands-on Session 1: Data Loading and 3D Visualization (Andrey Fedorov for Sonia Pujol)
10:00 AM Coffee-break
10:15 PM Hands-on Session 2: Contributing extension to 3D Slicer - Part 1 (Andrey Fedorov) slides
11:15 PM Lunch (will be provided)
12:15 PM Hands-on Session 3: Contributing extension to 3D Slicer - Part 2 (Andrey Fedorov) slides
2:00 PM Break
2:30 PM DICOM Support for Quantitative Imaging (David Clunie) slides
3:30 PM QIICR: DICOM for quantitative imaging research in 3D Slicer (Andrey Fedorov) slides
Time Wednesday, November 19, 2014
09:30-12:00 PM QIICR meetings (ad hoc)

Datasets

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