Difference between revisions of "Projects:RegistrationDocumentation:RegLibTable"
From NAMIC Wiki
| Line 24: | Line 24: | ||
| MRI T1 | | MRI T1 | ||
| change detection, tumor follow-up | | change detection, tumor follow-up | ||
| − | | [[Image:Button_blue_xparent.png|15px|left|This case is complete but under revision and may receive updates]] | + | | r[[Image:Button_blue_xparent.png|15px|left|This case is complete but under revision and may receive updates]] |
|- | |- | ||
| 2 | | 2 | ||
| Line 34: | Line 34: | ||
| MRI T2 FLAIR | | MRI T2 FLAIR | ||
| | | | ||
| − | |[[Image:Button_green_xparent.png|15px|left|This case is complete]] | + | | .[[Image:Button_green_xparent.png|15px|left|This case is complete]] |
|- | |- | ||
| 3 | | 3 | ||
| Line 44: | Line 44: | ||
| DTI | | DTI | ||
| align DTI volume with structural reference scan (T2) | | align DTI volume with structural reference scan (T2) | ||
| − | |[[Image:UnderConstruction_xparent.png|left|40px|this case is still under active development. Comments and priority requests welcome to the slicer-users mailing list]] | + | | c[[Image:UnderConstruction_xparent.png|left|40px|this case is still under active development. Comments and priority requests welcome to the slicer-users mailing list]] |
|- | |- | ||
| 4 | | 4 | ||
| Line 54: | Line 54: | ||
| MRI PD/T2 T1Gd | | MRI PD/T2 T1Gd | ||
| align 2 sets of multi-contrast MRI for lesion change assessment | | align 2 sets of multi-contrast MRI for lesion change assessment | ||
| − | |[[Image:Button_green_xparent.png|15px|left|This case is complete]] | + | | .[[Image:Button_green_xparent.png|15px|left|This case is complete]] |
|- | |- | ||
| 5 | | 5 | ||
| Line 64: | Line 64: | ||
| MRI | | MRI | ||
| inter-subject alignment of knee MRI for atlas-based segmentation | | inter-subject alignment of knee MRI for atlas-based segmentation | ||
| − | |[[Image:UnderConstruction_xparent.png|left|40px|this case is still under active development. Comments and priority requests welcome to the slicer-users mailing list]] | + | | c[[Image:UnderConstruction_xparent.png|left|40px|this case is still under active development. Comments and priority requests welcome to the slicer-users mailing list]] |
|- | |- | ||
| 6 | | 6 | ||
| Line 74: | Line 74: | ||
| MRI | | MRI | ||
| post-intervention assessment of breast cancer | | post-intervention assessment of breast cancer | ||
| − | |[[Image:Button_green_xparent.png|15px|left|This case is complete]] | + | | .[[Image:Button_green_xparent.png|15px|left|This case is complete]] |
|- | |- | ||
| 7 | | 7 | ||
| Line 84: | Line 84: | ||
| MRI | | MRI | ||
| change-assessment in post-intervention MRI follow-up | | change-assessment in post-intervention MRI follow-up | ||
| − | |[[Image:UnderConstruction_xparent.png|left|40px|this case is still under active development. Comments and priority requests welcome to the slicer-users mailing list]] | + | | c[[Image:UnderConstruction_xparent.png|left|40px|this case is still under active development. Comments and priority requests welcome to the slicer-users mailing list]] |
|- | |- | ||
| 8 | | 8 | ||
| Line 94: | Line 94: | ||
| PET-CT | | PET-CT | ||
| follow-up change assessment from combined whole-body PET-CT pair | | follow-up change assessment from combined whole-body PET-CT pair | ||
| − | |[[Image:Button_green_xparent.png|15px|left|This case is complete]] | + | | [[Image:Button_green_xparent.png|15px|left|This case is complete]] |
|- | |- | ||
| 9 | | 9 | ||
| Line 104: | Line 104: | ||
| fMRI | | fMRI | ||
| align fMRI with structural reference (T1) | | align fMRI with structural reference (T1) | ||
| − | |[[Image:UnderConstruction_xparent.png|left|40px|this case is still under active development. Comments and priority requests welcome to the slicer-users mailing list]] | + | | [[Image:UnderConstruction_xparent.png|left|40px|this case is still under active development. Comments and priority requests welcome to the slicer-users mailing list]] |
|- | |- | ||
| 10 | | 10 | ||
| Line 114: | Line 114: | ||
| MRI | | MRI | ||
| align probabilistic tissue atlas with target brain for guiding EM tissue class segmentation | | align probabilistic tissue atlas with target brain for guiding EM tissue class segmentation | ||
| − | |[[Image:Button_green_xparent.png|15px|left|This case is complete]] | + | | [[Image:Button_green_xparent.png|15px|left|This case is complete]] |
|- | |- | ||
| 11 | | 11 | ||
| Line 124: | Line 124: | ||
| MRI / labelmaps | | MRI / labelmaps | ||
| co-register surface models of thalamus for two separate subjects, merging anatomical labelmaps | | co-register surface models of thalamus for two separate subjects, merging anatomical labelmaps | ||
| − | |[[Image:Button_green_xparent.png|15px|left|This case is complete]] | + | | [[Image:Button_green_xparent.png|15px|left|This case is complete]] |
|- | |- | ||
| 12 | | 12 | ||
| Line 134: | Line 134: | ||
| MRI + CT | | MRI + CT | ||
| Liver tumor ablation #1: intra-operative MRI to pre-op CT. | | Liver tumor ablation #1: intra-operative MRI to pre-op CT. | ||
| − | |[[Image:UnderConstruction_xparent.png|left|40px|this case is still under active development. Comments and priority requests welcome to the slicer-users mailing list]] | + | | [[Image:UnderConstruction_xparent.png|left|40px|this case is still under active development. Comments and priority requests welcome to the slicer-users mailing list]] |
|- | |- | ||
|- | |- | ||
| Line 145: | Line 145: | ||
| CT + MRI | | CT + MRI | ||
| Liver tumor ablation : post-operative CT to pre-op CT & MRI | | Liver tumor ablation : post-operative CT to pre-op CT & MRI | ||
| − | |[[Image:UnderConstruction_xparent.png|left|40px|this case is still under active development. Comments and priority requests welcome to the slicer-users mailing list]] | + | | [[Image:UnderConstruction_xparent.png|left|40px|this case is still under active development. Comments and priority requests welcome to the slicer-users mailing list]] |
|- | |- | ||
| 14 | | 14 | ||
| Line 155: | Line 155: | ||
| PET + MRI | | PET + MRI | ||
| alignment of brain PET to structural MRI, with adjustments to MRI aspect ratio and orientation. | | alignment of brain PET to structural MRI, with adjustments to MRI aspect ratio and orientation. | ||
| − | |[[Image:Button_green_xparent.png|15px|left|This case is complete]] | + | | [[Image:Button_green_xparent.png|15px|left|This case is complete]] |
|- | |- | ||
| 15 | | 15 | ||
| Line 165: | Line 165: | ||
| MRI | | MRI | ||
| Realigning a single brain MRI along the anterior-posterior commissure line. | | Realigning a single brain MRI along the anterior-posterior commissure line. | ||
| − | |[[Image:Button_green_xparent.png|15px|left|This case is complete]] | + | | [[Image:Button_green_xparent.png|15px|left|This case is complete]] |
|- | |- | ||
| 16 | | 16 | ||
| Line 175: | Line 175: | ||
| MRI | | MRI | ||
| manually align FLAIR MRI with anatomical reference T1. | | manually align FLAIR MRI with anatomical reference T1. | ||
| − | |[[Image:Button_green_xparent.png|15px|left|This case is complete]] | + | | [[Image:Button_green_xparent.png|15px|left|This case is complete]] |
|- | |- | ||
| 17 | | 17 | ||
| Line 185: | Line 185: | ||
| modality | | modality | ||
| descr. | | descr. | ||
| − | |[[Image:UnderConstruction_xparent.png|left|40px|this case is still under active development. Comments and priority requests welcome to the slicer-users mailing list]] | + | | [[Image:UnderConstruction_xparent.png|left|40px|this case is still under active development. Comments and priority requests welcome to the slicer-users mailing list]] |
|- | |- | ||
| 18 | | 18 | ||
| Line 195: | Line 195: | ||
| modality | | modality | ||
| descr. | | descr. | ||
| − | |[[Image:UnderConstruction_xparent.png|left|40px|this case is still under active development. Comments and priority requests welcome to the slicer-users mailing list]] | + | | [[Image:UnderConstruction_xparent.png|left|40px|this case is still under active development. Comments and priority requests welcome to the slicer-users mailing list]] |
|- | |- | ||
| 19 | | 19 | ||
| Line 205: | Line 205: | ||
| modality | | modality | ||
| descr. | | descr. | ||
| − | |[[Image:UnderConstruction_xparent.png|left|40px|this case is still under active development. Comments and priority requests welcome to the slicer-users mailing list]] | + | | [[Image:UnderConstruction_xparent.png|left|40px|this case is still under active development. Comments and priority requests welcome to the slicer-users mailing list]] |
|- | |- | ||
| 20 | | 20 | ||
| Line 215: | Line 215: | ||
| modality | | modality | ||
| descr. | | descr. | ||
| − | |[[Image:UnderConstruction_xparent.png|left|40px|this case is still under active development. Comments and priority requests welcome to the slicer-users mailing list]] | + | | [[Image:UnderConstruction_xparent.png|left|40px|this case is still under active development. Comments and priority requests welcome to the slicer-users mailing list]] |
|} | |} | ||
Revision as of 18:23, 1 June 2010
Home < Projects:RegistrationDocumentation:RegLibTable
Registration Library Cases : Sortable Table
to link to the library case page, click on the thumbnail image, to link to the toolbox documentation, click on the link in the toolbox column.
| id | thumbnail | structure | pathology | DOF | toolbox | modality | description | status |
|---|---|---|---|---|---|---|---|---|
| 1 | 
|
brain | glioblastoma | 12 | Expert Automated | MRI T1 | change detection, tumor follow-up | r |
| 2 | 
|
brain | multiple sclerosis | 12 | Expert Automated | MRI T2 FLAIR | . | |
| 3 | 
|
brain | tumor | nonrigid | Fast Nonrigid BSpline | DTI | align DTI volume with structural reference scan (T2) | c |
| 4 | 
|
Brain | multiple sclerosis | 12 | Expert Automated | MRI PD/T2 T1Gd | align 2 sets of multi-contrast MRI for lesion change assessment | . |
| 5 | 
|
knee | N/A | 12 + nonrigid | Surface Registration | MRI | inter-subject alignment of knee MRI for atlas-based segmentation | c |
| 6 | 
|
breast | tumor | 6 + nonrigid | Manual + Fast Nonrigid BSpline | MRI | post-intervention assessment of breast cancer | . |
| 7 | RegLib 07: Prostate baseline | prostate | N/A | 12 + nonrigid | Fast Affine + Fast Nonrigid BSpline | MRI | change-assessment in post-intervention MRI follow-up | c |
| 8 | 
|
abdominal, thoracic | path | 12 + nonrigid | Fast Affine + Fast Nonrigid BSpline | PET-CT | follow-up change assessment from combined whole-body PET-CT pair | |
| 9 | RegLib 09: T1 SPGR | brain | infarct | 12 + nonrigid | Fast Affine + Fast Nonrigid BSpline | fMRI | align fMRI with structural reference (T1) | |
| 10 | 
|
brain | N/A | 12 + nonrigid | Fast Affine + Fast Nonrigid BSpline | MRI | align probabilistic tissue atlas with target brain for guiding EM tissue class segmentation | |
| 11 |  |
brain | none | 12 | Surface Registration | MRI / labelmaps | co-register surface models of thalamus for two separate subjects, merging anatomical labelmaps | |
| 12 |  |
liver | tumor | nonrigid | Fast Nonrigid BSpline | MRI + CT | Liver tumor ablation #1: intra-operative MRI to pre-op CT. | |
| 13 |  |
liver | tumor | nonrigid | Fast Nonrigid BSpline | CT + MRI | Liver tumor ablation : post-operative CT to pre-op CT & MRI | |
| 14 |  |
brain | N/A | 12 | [toollink toolname] | PET + MRI | alignment of brain PET to structural MRI, with adjustments to MRI aspect ratio and orientation. | |
| 15 |  |
brain | none | 6 | AC-PC Transform | MRI | Realigning a single brain MRI along the anterior-posterior commissure line. | |
| 16 |  |
brain | N/A | 6 | Manual Registration:Transforms | MRI | manually align FLAIR MRI with anatomical reference T1. | |
| 17 | brain | pathol | DOF | [toollink toolname] | modality | descr. | | |
| 18 | brain | pathol | DOF | [toollink toolname] | modality | descr. | | |
| 19 | brain | pathol | DOF | [toollink toolname] | modality | descr. | | |
| 20 | brain | pathol | DOF | [toollink toolname] | modality | descr. | |
