Projects:RegistrationDocumentation:RegLibTable

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Registration Library Cases : Sortable Table

to link to the library case page, click on the thumbnail image, to link to the toolbox documentation, click on the link in the toolbox column. To sort the table by a category, click on the sort icon in the column header.
Legend:

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  this case is complete and up to date for version 3.6.1

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  this case was done on version 3.5 and not yet verified for 3.6.1

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  this case is complete but under revision and may receive updates

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  this case is still under development.

id	thumbnail	structure	pathology	DOF	toolbox	modality	description	status
1		brain	meningioma	12	BRAINSfit	MRI T1	change detection, tumor follow-up
2		brain	multiple sclerosis	12	BRAINSfit	MRI T2 FLAIR
3		brain	tumor	nonrigid	Fast Nonrigid BSpline	DTI	align DTI volume with structural reference scan (T2)
4		Brain	multiple sclerosis	12	BRAINSfit or Expert Automated	MRI PD/T2 T1Gd	align 2 sets of multi-contrast MRI for lesion change assessment
5		knee	N/A	12	Surface Registration	MRI	inter-subject alignment of knee MRI for atlas-based segmentation
6		breast	tumor	6 + nonrigid	Manual + Fast Nonrigid BSpline	MRI	post-intervention assessment of breast cancer
7	RegLib 07: Prostate baseline	prostate	N/A	12 + nonrigid	Fast Affine + Fast Nonrigid BSpline	MRI	change-assessment in post-intervention MRI follow-up	c
8		abdominal, thoracic	path	12 + nonrigid	Fast Affine + Fast Nonrigid BSpline or BRAINSfit	PET-CT	follow-up change assessment from combined whole-body PET-CT pair
9	RegLib 09: T1 SPGR	brain	infarct	12 + nonrigid	Fast Affine + Fast Nonrigid BSpline	fMRI	align fMRI with structural reference (T1)	c
10		brain	N/A	12 + nonrigid	Fast Affine + Fast Nonrigid BSpline	MRI	align probabilistic tissue atlas with target brain for guiding EM tissue class segmentation
11		brain	none	12	Surface Registration	MRI / labelmaps	co-register surface models of thalamus for two separate subjects, merging anatomical labelmaps
12		liver	tumor	nonrigid	Fast Nonrigid BSpline	MRI + CT	Liver tumor ablation #1: intra-operative MRI to pre-op CT.	c
13		liver	tumor	nonrigid	Fast Nonrigid BSpline	CT + MRI	Liver tumor ablation : post-operative CT to pre-op CT & MRI	c
14		brain	N/A	12	Expert Automated or BRAINSfit	PET + MRI	alignment of brain PET to structural MRI, with adjustments to MRI aspect ratio and orientation.
15		brain	none	6	AC-PC Transform	MRI	Realigning a single brain MRI along the anterior-posterior commissure line.
16		brain	N/A	6	Manual Registration:Transforms	MRI	manually align FLAIR MRI with anatomical reference T1.
18		brain	healthy, aging	12	BRAINSfit	MRI	align brain MRI both across and within exams
19		brain	healthy	12 + nonrigid	BRAINSfit & Fast nonrigid BSpline	MRI	multi-stage inter- and intra-subject MRI registration
27		brain	tumor	12 + nonrigid	BRAINSfit	DTI	Alignment of DTI scan to structural reference T1-SPGR for surgical planning (tumor resection)
29		brain	tumor	12 + nonrigid	BRAINSfit	DTI	Alignment of DTI scan to structural reference T2/T1-SPGR for surgical planning (tumor resection)
30		brain	N/A	12 + nonrigid	BRAINSfit	DTI	Alignment of DTI scan to structural reference T1 direct. No T2 available.
32		brain	N/A	12 + nonrigid	BRAINSfit	DTI	Alignment of DTI scan to structural reference T1 direct. No T2 available.
33		brain	N/A	12 + nonrigid	BRAINSfit	DTI	Alignment of DTI scan: inverse direction: aligning structural reference to DTI.
34		animal	N/A	12 + nonrigid	BRAINSfit	MRI	Alignment of mouse brain MRI atlas or different age
17	60px	brain	pathol	DOF	[toollink toolname]	modality	descr.	c