Difference between revisions of "Projects:RegistrationDocumentation:RegLibTable"
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| multiple sclerosis | | multiple sclerosis | ||
| 12 | | 12 | ||
− | | [ | + | | [https://www.slicer.org/wiki/Modules:BRAINSFit BRAINSfit] |
| MRI T2 FLAIR | | MRI T2 FLAIR | ||
| | | | ||
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| tumor | | tumor | ||
| nonrigid | | nonrigid | ||
− | | [ | + | | [https://www.slicer.org/wiki/Modules:DeformableB-SplineRegistration-Documentation-3.6 Fast Nonrigid BSpline] |
| DTI | | DTI | ||
| align DTI volume with structural reference scan (T2) | | align DTI volume with structural reference scan (T2) | ||
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| multiple sclerosis | | multiple sclerosis | ||
| 12 | | 12 | ||
− | | [ | + | | [https://www.slicer.org/wiki/Modules:BRAINSFit BRAINSfit] or [https://www.slicer.org/wiki/Modules:RegisterImages-Documentation-3.6 Expert Automated] |
| MRI PD/T2 T1Gd | | MRI PD/T2 T1Gd | ||
| align 2 sets of multi-contrast MRI for lesion change assessment | | align 2 sets of multi-contrast MRI for lesion change assessment | ||
− | | [[Image: | + | | 4[[Image:Slicer41VerifiedIcon.png|50px|verified/updated for Slicer 4.1]] |
|- | |- | ||
| 5 | | 5 | ||
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| N/A | | N/A | ||
| 12 | | 12 | ||
− | | [ | + | | [https://www.slicer.org/wiki/Modules:PythonSurfaceICPRegistration-Documentation-3.6 Surface Registration] |
| MRI | | MRI | ||
| inter-subject alignment of knee MRI for atlas-based segmentation | | inter-subject alignment of knee MRI for atlas-based segmentation | ||
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| N/A | | N/A | ||
| 12 + nonrigid | | 12 + nonrigid | ||
− | | [ | + | | [https://www.slicer.org/wiki/Modules:BRAINSFit BRAINSfit] |
| MRI | | MRI | ||
| change-assessment in post-intervention MRI follow-up | | change-assessment in post-intervention MRI follow-up | ||
− | | [[Image: | + | | 4[[Image:Slicer41VerifiedIcon.png|50px|verified/updated for Slicer 4.1]] |
|- | |- | ||
| 8 | | 8 | ||
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| path | | path | ||
| 12 + nonrigid | | 12 + nonrigid | ||
− | | [ | + | | [https://www.slicer.org/wiki/Modules:AffineRegistration-Documentation-3.6 Fast Affine] + [https://www.slicer.org/wiki/Modules:DeformableB-SplineRegistration-Documentation-3.6 Fast Nonrigid BSpline] or [https://www.slicer.org/wiki/Modules:BRAINSFit BRAINSfit] |
| PET-CT | | PET-CT | ||
| follow-up change assessment from combined whole-body PET-CT pair | | follow-up change assessment from combined whole-body PET-CT pair | ||
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| infarct | | infarct | ||
| 12 + nonrigid | | 12 + nonrigid | ||
− | | [ | + | | [https://www.slicer.org/wiki/Modules:BRAINSFit BRAINSfit] |
| fMRI | | fMRI | ||
| align fMRI with structural reference (T1) | | align fMRI with structural reference (T1) | ||
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| N/A | | N/A | ||
| 12 + nonrigid | | 12 + nonrigid | ||
− | | [ | + | | [https://www.slicer.org/wiki/Modules:AffineRegistration-Documentation-3.6 Fast Affine] + [https://www.slicer.org/wiki/Modules:DeformableB-SplineRegistration-Documentation-3.6 Fast Nonrigid BSpline] |
| MRI | | MRI | ||
| align probabilistic tissue atlas with target brain for guiding EM tissue class segmentation | | align probabilistic tissue atlas with target brain for guiding EM tissue class segmentation | ||
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| none | | none | ||
| 12 | | 12 | ||
− | | [ | + | | [https://www.slicer.org/wiki/Modules:PythonSurfaceICPRegistration-Documentation-3.6 Surface Registration] |
| MRI / labelmaps | | MRI / labelmaps | ||
| co-register surface models of thalamus for two separate subjects, merging anatomical labelmaps | | co-register surface models of thalamus for two separate subjects, merging anatomical labelmaps | ||
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| N/A | | N/A | ||
| 12 | | 12 | ||
− | | [ | + | | [https://www.slicer.org/wiki/Modules:RegisterImages-Documentation-3.6 Expert Automated] or [https://www.slicer.org/wiki/Modules:BRAINSFit BRAINSfit] |
| PET + MRI | | PET + MRI | ||
| alignment of brain PET to structural MRI, with adjustments to MRI aspect ratio and orientation. | | alignment of brain PET to structural MRI, with adjustments to MRI aspect ratio and orientation. | ||
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| none | | none | ||
| 6 | | 6 | ||
− | | [ | + | | [https://www.slicer.org/wiki/Modules:ACPCTransform-Documentation-3.6 AC-PC Transform] |
| MRI | | MRI | ||
| Realigning a single brain MRI along the anterior-posterior commissure line. | | Realigning a single brain MRI along the anterior-posterior commissure line. | ||
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| N/A | | N/A | ||
| 6 | | 6 | ||
− | | [ | + | | [https://www.slicer.org/wiki/Modules:Transforms-Documentation-3.6 Manual Registration:Transforms] |
| MRI | | MRI | ||
| manually align FLAIR MRI with anatomical reference T1. | | manually align FLAIR MRI with anatomical reference T1. | ||
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| tumor | | tumor | ||
| affine | | affine | ||
− | | [ | + | | [https://www.slicer.org/wiki/Modules:BRAINSFit BRAINSfit] |
| CT + MRI | | CT + MRI | ||
| kidney tumor ablation : intra-operative CT to pre-op MRI | | kidney tumor ablation : intra-operative CT to pre-op MRI | ||
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| healthy, aging | | healthy, aging | ||
| 12 | | 12 | ||
− | | [ | + | | [https://www.slicer.org/wiki/Modules:BRAINSFit BRAINSfit] |
| MRI | | MRI | ||
| align brain MRI both across and within exams | | align brain MRI both across and within exams | ||
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| healthy | | healthy | ||
| 12 + nonrigid | | 12 + nonrigid | ||
− | | [ | + | | [https://www.slicer.org/wiki/Modules:BRAINSFit BRAINSfit] & [https://www.slicer.org/wiki/Modules:DeformableB-SplineRegistration-Documentation-3.6 Fast nonrigid BSpline] |
| MRI | | MRI | ||
| multi-stage inter- and intra-subject MRI registration | | multi-stage inter- and intra-subject MRI registration | ||
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| N/A | | N/A | ||
| 12 + nonrigid | | 12 + nonrigid | ||
− | | [ | + | | [https://www.slicer.org/wiki/Modules:BRAINSFit BRAINSfit] |
| PET-CT | | PET-CT | ||
| follow-up change assessment from combined whole-body PET-CT pair | | follow-up change assessment from combined whole-body PET-CT pair | ||
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| N/A | | N/A | ||
| 12 + nonrigid | | 12 + nonrigid | ||
− | | [ | + | | [https://www.slicer.org/wiki/Modules:BRAINSFit BRAINSfit] |
| MRI | | MRI | ||
| inter-subject knee registration to build priors for cartilage segmentation | | inter-subject knee registration to build priors for cartilage segmentation | ||
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| DTI | | DTI | ||
| Alignment of DTI scan to structural reference T1-SPGR for surgical planning (tumor resection) | | Alignment of DTI scan to structural reference T1-SPGR for surgical planning (tumor resection) | ||
− | | [[Image:Slicer41VerifiedIcon.png|50px|verified/updated for Slicer 4.1]] | + | | 4[[Image:Slicer41VerifiedIcon.png|50px|verified/updated for Slicer 4.1]] |
|- | |- | ||
| 28 | | 28 | ||
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| N/A | | N/A | ||
| 12 + nonrigid | | 12 + nonrigid | ||
− | | [ | + | | [https://www.slicer.org/wiki/Modules:BRAINSFit BRAINSfit] |
| DTI | | DTI | ||
| Alignment of DTI scan to structural reference T1 direct. No T2 available. | | Alignment of DTI scan to structural reference T1 direct. No T2 available. | ||
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| TBI | | TBI | ||
| 12 + nonrigid | | 12 + nonrigid | ||
− | | [ | + | | [https://www.slicer.org/wiki/Modules:BRAINSFit BRAINSfit] |
| MRI | | MRI | ||
| intra- and inter-exam registration of multi-contrast MRI follow-up in TBI | | intra- and inter-exam registration of multi-contrast MRI follow-up in TBI | ||
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| N/A | | N/A | ||
| 12 + nonrigid | | 12 + nonrigid | ||
− | | [ | + | | [https://www.slicer.org/wiki/Modules:BRAINSFit BRAINSfit] |
| DTI | | DTI | ||
| Alignment of DTI scan: inverse direction: aligning structural reference to DTI. | | Alignment of DTI scan: inverse direction: aligning structural reference to DTI. | ||
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| N/A | | N/A | ||
| 12 + nonrigid | | 12 + nonrigid | ||
− | | [ | + | | [https://www.slicer.org/wiki/Modules:BRAINSFit BRAINSfit] |
| MRI | | MRI | ||
| Alignment of mouse brain MRI atlas or different age | | Alignment of mouse brain MRI atlas or different age | ||
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| N/A | | N/A | ||
| 12 + nonrigid | | 12 + nonrigid | ||
− | | [ | + | | [https://www.slicer.org/wiki/Modules:SurfaceRegistration Surface Registration] |
| MRI | | MRI | ||
| Alignment of mouse colon MRI | | Alignment of mouse colon MRI | ||
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| tumor | | tumor | ||
| 6+12 + nonrigid | | 6+12 + nonrigid | ||
− | | [ | + | | [https://www.slicer.org/wiki/Modules:BRAINSFit BRAINSfit] |
| MRI | | MRI | ||
| Alignment of intra-subject MRI for therapy assessment | | Alignment of intra-subject MRI for therapy assessment | ||
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| spine cancer | | spine cancer | ||
| 12 | | 12 | ||
− | | [ | + | | [https://www.slicer.org/wiki/Modules:BRAINSFit BRAINSfit] |
| CT | | CT | ||
| Alignment of in vitro CT of thoracic vertebra before and after damage | | Alignment of in vitro CT of thoracic vertebra before and after damage | ||
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| materials science | | materials science | ||
| 12+nonrigid | | 12+nonrigid | ||
− | | [ | + | | [https://www.slicer.org/wiki/Modules:BRAINSFit BRAINSfit] |
| CT | | CT | ||
| Alignment of in micro CT of wood samples to test hygromechanical behavior. | | Alignment of in micro CT of wood samples to test hygromechanical behavior. | ||
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| | | | ||
| 12+nonrigid | | 12+nonrigid | ||
− | | [ | + | | [https://www.slicer.org/wiki/Modules:BRAINSFit BRAINSfit] |
| MRI | | MRI | ||
| Alignment of mouse brain MRI for group comparison | | Alignment of mouse brain MRI for group comparison | ||
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| Autism | | Autism | ||
| 12+nonrigid | | 12+nonrigid | ||
− | | [ | + | | [https://www.slicer.org/wiki/Modules:BRAINSFit BRAINSfit] |
| MRI | | MRI | ||
| Alignment of in longitudinal MRI of infant with autism (2-4 years) | | Alignment of in longitudinal MRI of infant with autism (2-4 years) | ||
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| cancer | | cancer | ||
| rigid | | rigid | ||
− | | [ | + | | [https://www.slicer.org/wiki/Modules:PythonSurfaceICPRegistration-Documentation-3.6 Surface Registration] |
| CT/3D models | | CT/3D models | ||
| Analysis of structural integrity change | | Analysis of structural integrity change | ||
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| N/A | | N/A | ||
| 12+nonrigid | | 12+nonrigid | ||
− | | [ | + | | [https://www.slicer.org/wiki/Modules:BRAINSFit BRAINSfit] |
| CT | | CT | ||
| Analysis of inter-subject shape differences via nonrigid deformation/registration | | Analysis of inter-subject shape differences via nonrigid deformation/registration | ||
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| | | | ||
| nonrigid | | nonrigid | ||
− | | [ | + | | [https://www.slicer.org/wiki/Modules:BRAINSFit BRAINSfit] |
| MRI | | MRI | ||
| Alignment of serial 2D lung MRI to assess dynamics | | Alignment of serial 2D lung MRI to assess dynamics |
Latest revision as of 17:06, 10 July 2017
Home < Projects:RegistrationDocumentation:RegLibTableRegistration Library Cases : Sortable Table
to link to the library case page, click on the thumbnail image, to link to the toolbox documentation, click on the link in the toolbox column. To sort the table by a category, click on the sort icon in the column header.
Legend:
this case is up to date for version 4.1
this case is up to date for version 3.6.3
this case is up to date for version 3.6.1
these cases are not yet registered / under development or presented as "challenge" cases for which no solution is avail. with the current Slicer tools. Some of these may have solutions with developer/extension modules or methods under development. Please contact the Slicer-User List for inquiries.
id | thumbnail | structure | pathology | DOF | toolbox | modality | description | status |
---|---|---|---|---|---|---|---|---|
1 | ![]() |
brain | meningioma | 12 | General Registration (BRAINS) | MRI T1 | change detection, tumor follow-up | 4![]() |
2 | ![]() |
brain | multiple sclerosis | 12 | BRAINSfit | MRI T2 FLAIR | 4![]() | |
3 | ![]() |
brain | tumor | nonrigid | Fast Nonrigid BSpline | DTI | align DTI volume with structural reference scan (T2) | 4![]() |
4 | ![]() |
Brain | multiple sclerosis | 12 | BRAINSfit or Expert Automated | MRI PD/T2 T1Gd | align 2 sets of multi-contrast MRI for lesion change assessment | 4![]() |
5 | ![]() |
knee | N/A | 12 | Surface Registration | MRI | inter-subject alignment of knee MRI for atlas-based segmentation | |
6 | ![]() |
breast | tumor | 12 + nonrigid | General Registration (BRAINS) | MRI | post-intervention assessment of breast cancer | 4![]() |
7 | ![]() |
prostate | N/A | 12 + nonrigid | BRAINSfit | MRI | change-assessment in post-intervention MRI follow-up | 4![]() |
8 | ![]() |
abdominal, thoracic | path | 12 + nonrigid | Fast Affine + Fast Nonrigid BSpline or BRAINSfit | PET-CT | follow-up change assessment from combined whole-body PET-CT pair | |
9 | ![]() |
brain | infarct | 12 + nonrigid | BRAINSfit | fMRI | align fMRI with structural reference (T1) | ![]() |
10 | ![]() |
brain | N/A | 12 + nonrigid | Fast Affine + Fast Nonrigid BSpline | MRI | align probabilistic tissue atlas with target brain for guiding EM tissue class segmentation | ![]() |
11 | brain | none | 12 | Surface Registration | MRI / labelmaps | co-register surface models of thalamus for two separate subjects, merging anatomical labelmaps | ![]() | |
12 | liver | tumor | nonrigid | General Registration (BRAINS) | MRI + CT | Liver tumor ablation #1: intra-operative MRI to pre-op CT. | 4![]() | |
13 | liver | tumor | nonrigid | General Registration (BRAINS) | CT + MRI | Liver tumor ablation : post-operative CT to pre-op CT & MRI | 4![]() | |
14 | brain | N/A | 12 | Expert Automated or BRAINSfit | PET + MRI | alignment of brain PET to structural MRI, with adjustments to MRI aspect ratio and orientation. | ![]() | |
15 | brain | none | 6 | AC-PC Transform | MRI | Realigning a single brain MRI along the anterior-posterior commissure line. | ||
16 | brain | N/A | 6 | Manual Registration:Transforms | MRI | manually align FLAIR MRI with anatomical reference T1. | ||
17 | kidney | tumor | affine | BRAINSfit | CT + MRI | kidney tumor ablation : intra-operative CT to pre-op MRI | ![]() | |
18 | brain | healthy, aging | 12 | BRAINSfit | MRI | align brain MRI both across and within exams | ||
19 | brain | healthy | 12 + nonrigid | BRAINSfit & Fast nonrigid BSpline | MRI | multi-stage inter- and intra-subject MRI registration | ||
20 | ![]() |
abdominal, thoracic | N/A | 12 + nonrigid | BRAINSfit | PET-CT | follow-up change assessment from combined whole-body PET-CT pair | 4![]() |
21 | ![]() |
knee | N/A | 12 + nonrigid | BRAINSfit | MRI | inter-subject knee registration to build priors for cartilage segmentation | ![]() |
27 | brain | tumor | 12 + nonrigid | General Registration (BRAINS) | DTI | Alignment of DTI scan to structural reference T1-SPGR for surgical planning (tumor resection) | 4![]() | |
28 | vertebra | spine cancer | 12 | General Registration (BRAINS) | CT | Alignment of in vitro CT of spinal vertebra before and after damage | ![]() | |
29 | brain | tumor | 12 + nonrigid | General Registration (BRAINS) | DTI | Alignment of DTI scan to structural reference T2/T1-SPGR for surgical planning (tumor resection) | 4![]() | |
30 | brain | N/A | 12 + nonrigid | BRAINSfit | DTI | Alignment of DTI scan to structural reference T1 direct. No T2 available. | 4![]() | |
31 | brain | TBI | 12 + nonrigid | BRAINSfit | MRI | intra- and inter-exam registration of multi-contrast MRI follow-up in TBI | ||
32 | brain | N/A | 12 + nonrigid | BRAINSfit | DTI | Alignment of DTI scan: inverse direction: aligning structural reference to DTI. | ||
33 | brain | N/A | 12 + nonrigid | General Registration (BRAINS) | DTI | Alignment of hi-res multi contrast exam, incl. T1Gd FLAIR and DTI to T1 reference | 4![]() | |
34 | animal | N/A | 12 + nonrigid | BRAINSfit | MRI | Alignment of mouse brain MRI atlas or different age | ||
35 | animal | N/A | 12 + nonrigid | Surface Registration | MRI | Alignment of mouse colon MRI | ||
37 | brain | tumor | 6+12 + nonrigid | BRAINSfit | MRI | Alignment of intra-subject MRI for therapy assessment | ||
38 | brain | TBI | 12 + nonrigid | General Registration (BRAINS) | MRI | intra- and inter-exam registration of multi-contrast MRI follow-up in TBI at 3T | 4![]() | |
39 | vertebra | spine cancer | 12 | BRAINSfit | CT | Alignment of in vitro CT of thoracic vertebra before and after damage | ||
40 | wood sample | materials science | 12+nonrigid | BRAINSfit | CT | Alignment of in micro CT of wood samples to test hygromechanical behavior. | ||
41 | Mouse Brain | 12+nonrigid | BRAINSfit | MRI | Alignment of mouse brain MRI for group comparison | |||
42 | Infant Brain | Autism | 12+nonrigid | BRAINSfit | MRI | Alignment of in longitudinal MRI of infant with autism (2-4 years) | ||
43 | vertebrae/spine | cancer | rigid | Surface Registration | CT/3D models | Analysis of structural integrity change | ||
44 | Pelvis | N/A | 12+nonrigid | BRAINSfit | CT | Analysis of inter-subject shape differences via nonrigid deformation/registration | ||
46 | dynamic lung MRI | nonrigid | BRAINSfit | MRI | Alignment of serial 2D lung MRI to assess dynamics | |||
47 | liver | tumor | nonrigid | General Registration (BRAINS) | MRI + CT | Liver tumor ablation: intra-op MRI to intra-op CT. | 4![]() |