Difference between revisions of "Projects:RegistrationDocumentation:RegLibTable"

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= Registration Library Cases : Sortable Table ===
+
[[Projects:RegistrationDocumentation:UseCaseInventory|back to Library Main Page]]  <br>
 +
 
 +
= Registration Library Cases : Sortable Table =
 +
to link to the library case page, click on the thumbnail image, to link to the toolbox documentation, click on the link in the toolbox column. To sort the table by a category, click on the sort icon in the column header.<br>
 +
Legend:
 +
:*[[Image:Slicer41VerifiedIcon.png|50px|verified/updated for Slicer 4.1]]<small> this case is up to date for version '''4.1'''</small> <br>
 +
:*[[Image:Slicer_cvers_banner.png‎|60px|this case is up to date for version '''3.6.3''']]<small> this case is up to date for version '''3.6.3'''</small> <br>
 +
:*[[Image:Slicer3-6Announcement-v1.png‎‎|60px| this case is up to date for version 3.6.1]]<small> this case is up to date for version 3.6.1</small><br>
 +
:*[[Image:UnderConstruction_xparent.png‎|60px| these cases are not yet registered /  under development]]<small> these cases are not yet registered /  under development or presented as "challenge" cases for which no solution is avail. with the current Slicer tools. Some of these may have solutions with developer/extension modules or methods under development. Please contact the [mailto:slicer-users@bwh.harvard.edu Slicer-User List] for inquiries.</small><br>
 +
 
 +
 
 
{| class="wikitable sortable labelpage labelpagetable" border="1"
 
{| class="wikitable sortable labelpage labelpagetable" border="1"
 
|-
 
|-
 
! id
 
! id
 +
! thumbnail
 
! structure
 
! structure
 
! pathology
 
! pathology
 
! DOF
 
! DOF
 
! toolbox
 
! toolbox
−
! type
+
! modality
 
! description
 
! description
 +
! status
 
|-
 
|-
 
| 1
 
| 1
−
| Brain
+
| [[Image:RegUC2_thumb_t0.png|60px|lleft|RegLib C01: Tumor change assessment|link=Projects:RegistrationLibrary:RegLib_C01]]
−
| glioblastoma
+
| brain
 +
| meningioma
 
| 12
 
| 12
−
| Expert Automated
+
| [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.1/Modules/BRAINSFit General Registration (BRAINS)]
−
| intra-subject
+
| MRI T1
 
| change detection, tumor follow-up
 
| change detection, tumor follow-up
 +
| 4[[Image:Slicer41VerifiedIcon.png|50px|verified/updated for Slicer 4.1]]
 
|-
 
|-
 
| 2
 
| 2
−
| Brain
+
|[[Image:RLib02_SPGR.png|60px|lleft|RegLib C02: MS multispectral alignment|link=Projects:RegistrationLibrary:RegLib_C02]]
−
| normal
+
| brain
 +
| multiple sclerosis
 
| 12
 
| 12
−
| Expert Automated
+
| [https://www.slicer.org/wiki/Modules:BRAINSFit BRAINSfit]
−
| intra-subject
+
| MRI T2 FLAIR
 
|  
 
|  
 +
| 4[[Image:Slicer41VerifiedIcon.png|50px|verified/updated for Slicer 4.1]]
 
|-
 
|-
 
| 3
 
| 3
−
| organ
+
| [[Image:RegLib_C03_DTIVol_axial.png|60px|lleft|RegLib C03: DTI alignment|link=Projects:RegistrationLibrary:RegLib_C03]]
 +
| brain
 +
| tumor
 +
| nonrigid
 +
| [https://www.slicer.org/wiki/Modules:DeformableB-SplineRegistration-Documentation-3.6 Fast Nonrigid BSpline]
 +
| DTI
 +
| align DTI volume with structural reference scan (T2)
 +
| 4[[Image:Slicer41VerifiedIcon.png|50px|verified/updated for Slicer 4.1]]
 +
|-
 +
| 4
 +
| [[Image:Reglib_C04_Thumb_PD1.jpg‎|60px|lleft|RegLib C04: MS Lesion baseline|link=Projects:RegistrationLibrary:RegLib_C04]]
 +
| Brain
 +
| multiple sclerosis
 +
| 12
 +
| [https://www.slicer.org/wiki/Modules:BRAINSFit BRAINSfit] or [https://www.slicer.org/wiki/Modules:RegisterImages-Documentation-3.6 Expert Automated]
 +
| MRI PD/T2 T1Gd
 +
| align 2 sets of multi-contrast MRI for lesion change assessment
 +
| 4[[Image:Slicer41VerifiedIcon.png|50px|verified/updated for Slicer 4.1]]
 +
|-
 +
| 5
 +
| [[Image:RegLib C05 KneeMRI1.png|60px|lleft|RegLib 05: Knee MRI subject 1|link=Projects:RegistrationLibrary:RegLib_C05]]
 +
| knee
 +
| N/A
 +
| 12
 +
| [https://www.slicer.org/wiki/Modules:PythonSurfaceICPRegistration-Documentation-3.6 Surface Registration]
 +
| MRI
 +
| inter-subject alignment of knee MRI for atlas-based segmentation
 +
| [[Image:Slicer3-6Announcement-v1.png‎|70px|left|This case is complete and up to date for version 3.6.1]]
 +
|-
 +
| 6
 +
| [[Image:RegLib C06 BreastMRIPostRx.png|60px|lleft|RegLib 06: Breast MRI|link=Projects:RegistrationLibrary:RegLib_C06]]
 +
| breast
 +
| tumor
 +
| 12 + nonrigid
 +
| [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.1/Modules/BRAINSFit General Registration (BRAINS)]
 +
| MRI
 +
| post-intervention assessment of breast cancer
 +
| 4[[Image:Slicer41VerifiedIcon.png|50px|verified/updated for Slicer 4.1]]
 +
|-
 +
| 7
 +
| [[Image:RegLib C07_Thumb1.png|60px|lleft|RegLib 07: Prostate baseline|link=Projects:RegistrationLibrary:RegLib_C07]]
 +
| prostate
 +
| N/A
 +
| 12 + nonrigid
 +
| [https://www.slicer.org/wiki/Modules:BRAINSFit BRAINSfit]
 +
| MRI
 +
| change-assessment in post-intervention MRI follow-up
 +
| 4[[Image:Slicer41VerifiedIcon.png|50px|verified/updated for Slicer 4.1]]
 +
|-
 +
| 8
 +
| [[Image:RegLib_C08_WholeBodyPET-CT1.png|60px|lleft|RegLib C08: PET-CT1|link=Projects:RegistrationLibrary:RegLib_C08]]
 +
| abdominal, thoracic
 
| path
 
| path
−
| DOF
+
| 12 + nonrigid
−
| toolbox
+
| [https://www.slicer.org/wiki/Modules:AffineRegistration-Documentation-3.6 Fast Affine] + [https://www.slicer.org/wiki/Modules:DeformableB-SplineRegistration-Documentation-3.6 Fast Nonrigid BSpline] or [https://www.slicer.org/wiki/Modules:BRAINSFit BRAINSfit]
−
| type
+
| PET-CT
−
| description
+
| follow-up change assessment from combined whole-body PET-CT pair
 +
|  [[Image:Slicer3-6Announcement-v1.png‎|70px|left|This case is complete and up to date for version 3.6.1]]
 
|-
 
|-
−
| 3
+
| 9
−
| organ
+
| [[Image:RegLib_C09_Thumb2.png|70px|lleft|RegLib C09: T1 SPGR|link=Projects:RegistrationLibrary:RegLib_C09]]
−
| path
+
| brain
−
| DOF
+
| infarct
−
| toolbox
+
| 12 + nonrigid
−
| type
+
| [https://www.slicer.org/wiki/Modules:BRAINSFit BRAINSfit]
−
| description
+
| fMRI
 +
| align fMRI with structural reference (T1)
 +
| [[Image:Slicer_cvers_banner.png|70px|This case is complete and up to date for version 3.6.3]]
 +
|-
 +
| 10
 +
|  [[Image:RegLib_C10_EMAtlas2.png|60px|lleft|Probabilistic Tissue Atlas|link=Projects:RegistrationLibrary:RegLib_C10]]
 +
| brain
 +
| N/A
 +
| 12 + nonrigid
 +
|  [https://www.slicer.org/wiki/Modules:AffineRegistration-Documentation-3.6 Fast Affine] + [https://www.slicer.org/wiki/Modules:DeformableB-SplineRegistration-Documentation-3.6 Fast Nonrigid BSpline]
 +
| MRI
 +
| align probabilistic tissue atlas with target brain for guiding EM tissue class segmentation
 +
| [[Image:Slicer3-6Announcement-v1.png‎|70px|This case is complete and up to date for version 3.6.1]]
 +
|-
 +
| 11
 +
| [[Image:RegLib_C11_AtlasMerge_1.png|60px|left|link=Projects:RegistrationLibrary:RegLib_C11]]
 +
| brain
 +
| none
 +
| 12
 +
| [https://www.slicer.org/wiki/Modules:PythonSurfaceICPRegistration-Documentation-3.6 Surface Registration]
 +
| MRI / labelmaps
 +
| co-register surface models of thalamus for two separate subjects, merging anatomical labelmaps
 +
| [[Image:Slicer3-6Announcement-v1.png‎|70px|This case is complete and up to date for version 3.6.1]]
 +
|-
 +
| 12
 +
| [[Image:RegLib_C12_LiverTumor_MRI.png|60px|left|link=Projects:RegistrationLibrary:RegLib_C12]]
 +
| liver
 +
| tumor
 +
| nonrigid
 +
| [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.1/Modules/BRAINSFit General Registration (BRAINS)]
 +
| MRI + CT
 +
| Liver tumor ablation #1: intra-operative MRI to pre-op CT.
 +
| 4[[Image:Slicer41VerifiedIcon.png|50px|verified/updated for Slicer 4.1]]
 +
|-
 +
|-
 +
| 13
 +
| [[Image:RegLib_C13_LiverTumor2_CTpost.png|60px|left|link=Projects:RegistrationLibrary:RegLib_C13]]
 +
| liver
 +
| tumor
 +
| nonrigid
 +
| [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.1/Modules/BRAINSFit General Registration (BRAINS)]
 +
| CT + MRI
 +
| Liver tumor ablation : post-operative CT to pre-op CT & MRI
 +
| 4[[Image:Slicer41VerifiedIcon.png|50px|verified/updated for Slicer 4.1]]
 +
|-
 +
| 14
 +
| [[Image:RegLib_C14_Thumb_PET.png|60px|left|link=Projects:RegistrationLibrary:RegLib_C14]]
 +
| brain
 +
| N/A
 +
| 12
 +
| [https://www.slicer.org/wiki/Modules:RegisterImages-Documentation-3.6 Expert Automated] or  [https://www.slicer.org/wiki/Modules:BRAINSFit BRAINSfit]
 +
| PET + MRI
 +
| alignment of brain PET to structural MRI, with adjustments to MRI aspect ratio and orientation.
 +
| [[Image:Slicer3-6Announcement-v1.png‎|70px|This case is complete and up to date for version 3.6.1]]
 +
|-
 +
| 15
 +
| [[Image:RegLib_C15_Thumb.png|60px|left|link=Projects:RegistrationLibrary:RegLib_C15]]
 +
| brain
 +
| none
 +
| 6
 +
| [https://www.slicer.org/wiki/Modules:ACPCTransform-Documentation-3.6 AC-PC Transform]
 +
| MRI
 +
| Realigning a single brain MRI along the anterior-posterior commissure line.
 +
| [[Image:Slicer3-6Announcement-v1.png‎|70px|left|This case is complete and up to date for version 3.6.1]]
 +
|-
 +
| 16
 +
| [[Image:RegLib_C16_Brain0.png|60px|left|link=Projects:RegistrationLibrary:RegLib_C16]]
 +
| brain
 +
| N/A
 +
| 6
 +
| [https://www.slicer.org/wiki/Modules:Transforms-Documentation-3.6 Manual Registration:Transforms]
 +
| MRI
 +
| manually align FLAIR MRI with anatomical reference T1.
 +
| [[Image:Slicer3-6Announcement-v1.png‎|70px|left|This case is complete and up to date for version 3.6.1]]
 +
|-
 +
| 17
 +
| [[Image:RegLib_C17_Thumb1.png|60px|left|link=Projects:RegistrationLibrary:RegLib_C17]]
 +
| kidney
 +
| tumor
 +
| affine
 +
| [https://www.slicer.org/wiki/Modules:BRAINSFit BRAINSfit]
 +
| CT + MRI
 +
| kidney tumor ablation : intra-operative CT to pre-op MRI
 +
| [[Image:Slicer_cvers_banner.png‎|60px|this case is up to date for version '''3.6.3''']]
 +
|-
 +
| 18
 +
| [[Image:RegLib_C18_Thumb1.png|60px|left|link=Projects:RegistrationLibrary:RegLib_C18]]
 +
| brain
 +
| healthy, aging
 +
| 12
 +
| [https://www.slicer.org/wiki/Modules:BRAINSFit BRAINSfit]
 +
| MRI
 +
| align brain MRI both across and within exams
 +
| [[Image:Slicer3-6Announcement-v1.png‎|70px|left|This case is complete and up to date for version 3.6.1]]
 +
|-
 +
| 19
 +
| [[Image:RegLib_C19_thumb_all.png|60px|left|link=Projects:RegistrationLibrary:RegLib_C19]]
 +
| brain
 +
| healthy
 +
| 12 + nonrigid
 +
| [https://www.slicer.org/wiki/Modules:BRAINSFit BRAINSfit] & [https://www.slicer.org/wiki/Modules:DeformableB-SplineRegistration-Documentation-3.6 Fast nonrigid BSpline]
 +
| MRI
 +
| multi-stage inter- and intra-subject MRI registration
 +
| [[Image:Slicer3-6Announcement-v1.png‎|70px|left|This case is complete and up to date for version 3.6.1]]
 +
|-
 +
| 20
 +
| [[Image:RegLib_C20_Thumb1.png|60px|lleft|RegLib C20: PET-CT|link=Projects:RegistrationLibrary:RegLib_C20]]
 +
| abdominal, thoracic
 +
| N/A
 +
| 12 + nonrigid
 +
| [https://www.slicer.org/wiki/Modules:BRAINSFit BRAINSfit]
 +
| PET-CT
 +
| follow-up change assessment from combined whole-body PET-CT pair
 +
| 4[[Image:Slicer41VerifiedIcon.png|50px|verified/updated for Slicer 4.1]]
 +
|-
 +
| 21
 +
| [[Image:RegLib_C21_Thumb1.png|60px|lleft|RegLib C21: knee MRI|link=Projects:RegistrationLibrary:RegLib_C21]]
 +
| knee
 +
| N/A
 +
| 12 + nonrigid
 +
| [https://www.slicer.org/wiki/Modules:BRAINSFit BRAINSfit]
 +
| MRI
 +
| inter-subject knee registration to build priors for cartilage segmentation
 +
| [[Image:Slicer_cvers_banner.png‎|60px|this case is up to date for version '''3.6.3''']]
 +
|-
 +
| 27
 +
| [[Image:RegLib27_DTI.png|60px|left|link=Projects:RegistrationLibrary:RegLib_C27]]
 +
| brain
 +
| tumor
 +
| 12 + nonrigid
 +
|  [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.1/Modules/BRAINSFit General Registration (BRAINS)]
 +
| DTI
 +
| Alignment of DTI scan to structural reference T1-SPGR for surgical planning (tumor resection)
 +
| 4[[Image:Slicer41VerifiedIcon.png|50px|verified/updated for Slicer 4.1]]
 +
|-
 +
| 28
 +
| [[Image:RegLib_C28_Thumb1.png|60px|left|link=Projects:RegistrationLibrary:RegLib_C28]]
 +
| vertebra
 +
| spine cancer
 +
| 12
 +
| [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.1/Modules/BRAINSFit General Registration (BRAINS)]
 +
| CT
 +
| Alignment of in vitro CT of spinal vertebra before and after damage
 +
| [[Image:Slicer41VerifiedIcon.png|50px|verified/updated for Slicer 4.1]]
 +
|-
 +
| 29
 +
| [[Image:RegLib_C29_Thumb.png|60px|left|link=Projects:RegistrationLibrary:RegLib_C29]]
 +
| brain
 +
| tumor
 +
| 12 + nonrigid
 +
| [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.1/Modules/BRAINSFit General Registration (BRAINS)]
 +
| DTI
 +
| Alignment of DTI scan to structural reference T2/T1-SPGR for surgical planning (tumor resection)
 +
| 4[[Image:Slicer41VerifiedIcon.png|50px|verified/updated for Slicer 4.1]]
 +
|-
 +
| 30
 +
| [[Image:RegLib_C30_Thumb3.png|60px|left|link=Projects:RegistrationLibrary:RegLib_C30]]
 +
| brain
 +
| N/A
 +
| 12 + nonrigid
 +
| [https://www.slicer.org/wiki/Modules:BRAINSFit BRAINSfit]
 +
| DTI
 +
| Alignment of DTI scan to structural reference T1 direct. No T2 available.
 +
| 4[[Image:Slicer41VerifiedIcon.png|50px|verified/updated for Slicer 4.1]]
 +
|-
 +
| 31
 +
| [[Image:RegLib_C31_Thumb6.png|60px|left|link=Projects:RegistrationLibrary:RegLib_C31]]
 +
| brain
 +
| TBI
 +
| 12 + nonrigid
 +
| [https://www.slicer.org/wiki/Modules:BRAINSFit BRAINSfit]
 +
| MRI
 +
| intra- and inter-exam registration of multi-contrast MRI follow-up in TBI
 +
| [[Image:Slicer3-6Announcement-v1.png‎|70px|left|This case is complete and up to date for version 3.6.1]]
 +
|-
 +
| 32
 +
| [[Image:RegLib_C30_Thumb1.png|60px|left|link=Projects:RegistrationLibrary:RegLib_C30]]
 +
| brain
 +
| N/A
 +
| 12 + nonrigid
 +
| [https://www.slicer.org/wiki/Modules:BRAINSFit BRAINSfit]
 +
| DTI
 +
| Alignment of DTI scan: inverse direction: aligning structural reference to DTI.
 +
| [[Image:Slicer3-6Announcement-v1.png‎|70px|left|This case is complete and up to date for version 3.6.1]]
 +
|-
 +
| 33
 +
| [[Image:RegLib_C33_Thumb4.png|60px|left|link=Projects:RegistrationLibrary:RegLib_C33]]
 +
| brain
 +
| N/A
 +
| 12 + nonrigid
 +
| [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.1/Modules/BRAINSFit General Registration (BRAINS)]
 +
| DTI
 +
| Alignment of hi-res multi contrast exam, incl. T1Gd FLAIR and DTI to T1 reference
 +
| 4[[Image:Slicer41VerifiedIcon.png|50px|verified/updated for Slicer 4.1]]
 +
|-
 +
| 34
 +
| [[Image:RegLib_C34_Thumb2.png|60px|left|link=Projects:RegistrationLibrary:RegLib_C34]]
 +
| animal
 +
| N/A
 +
| 12 + nonrigid
 +
| [https://www.slicer.org/wiki/Modules:BRAINSFit BRAINSfit]
 +
| MRI
 +
| Alignment of mouse brain MRI atlas or different age
 +
| [[Image:Slicer3-6Announcement-v1.png‎|70px|left|This case is complete and up to date for version 3.6.1]]
 +
|-
 +
| 35
 +
| [[Image:RegLibC35_Thumb2.png|60px|left|link=Projects:RegistrationLibrary:RegLib_C35]]
 +
| animal
 +
| N/A
 +
| 12 + nonrigid
 +
| [https://www.slicer.org/wiki/Modules:SurfaceRegistration Surface Registration]
 +
| MRI
 +
| Alignment of mouse colon MRI
 +
| [[Image:UnderConstruction_xparent.png|40px|left|This is a challenge case / currently unsolved]]
 +
|-
 +
| 37
 +
| [[Image:RegLib_C37_Thumb1.png|60px|left|link=Projects:RegistrationLibrary:RegLib_C37]]
 +
| brain
 +
| tumor
 +
| 6+12 + nonrigid
 +
| [https://www.slicer.org/wiki/Modules:BRAINSFit BRAINSfit]
 +
| MRI
 +
| Alignment of intra-subject MRI for therapy assessment
 +
| [[Image:Slicer3-6Announcement-v1.png‎|70px|left|This case is complete and up to date for version 3.6.1]]
 +
|-
 +
| 38
 +
| [[Image:RegLib_C38_Thumb1.png|60px|left|link=Projects:RegistrationLibrary:RegLib_C38]]
 +
| brain
 +
| TBI
 +
| 12 + nonrigid
 +
| [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.1/Modules/BRAINSFit General Registration (BRAINS)]
 +
| MRI
 +
| intra- and inter-exam registration of multi-contrast MRI follow-up in TBI at 3T
 +
| 4[[Image:Slicer41VerifiedIcon.png|50px|verified/updated for Slicer 4.1]]
 +
|-
 +
| 39
 +
| [[Image:RegLib_C39_Thumb1.png|60px|left|link=Projects:RegistrationLibrary:RegLib_C39]]
 +
| vertebra
 +
| spine cancer
 +
| 12
 +
| [https://www.slicer.org/wiki/Modules:BRAINSFit BRAINSfit]
 +
| CT
 +
| Alignment of in vitro CT of thoracic vertebra before and after damage
 +
| [[Image:Slicer3-6Announcement-v1.png‎|70px|left|This case is complete and up to date for version 3.6.3]]
 +
|-
 +
| 40
 +
| [[Image:RegLib_C40_Thumb1.png|60px|left|link=Projects:RegistrationLibrary:RegLib_C40]]
 +
| wood sample
 +
| materials science
 +
| 12+nonrigid
 +
| [https://www.slicer.org/wiki/Modules:BRAINSFit BRAINSfit]
 +
| CT
 +
| Alignment of in micro CT of wood samples to test hygromechanical behavior.
 +
| [[Image:Slicer3-6Announcement-v1.png‎|70px|left|This case is complete and up to date for version 3.6.3]]
 +
|-
 +
| 41
 +
| [[Image:RegLib_C41_Thumb1.png|60px|left|link=Projects:RegistrationLibrary:RegLib_C41]]
 +
| Mouse Brain
 +
|
 +
| 12+nonrigid
 +
| [https://www.slicer.org/wiki/Modules:BRAINSFit BRAINSfit]
 +
| MRI
 +
| Alignment of mouse brain MRI for group comparison
 +
| [[Image:Slicer3-6Announcement-v1.png‎|70px|left|This case is complete and up to date for version 3.6.3]]
 +
|-
 +
| 42
 +
| [[Image:RegLib_C42_Thumb1.png|60px|left|link=Projects:RegistrationLibrary:RegLib_C42]]
 +
| Infant Brain
 +
| Autism
 +
| 12+nonrigid
 +
| [https://www.slicer.org/wiki/Modules:BRAINSFit BRAINSfit]
 +
| MRI
 +
| Alignment of in longitudinal MRI of infant with autism (2-4 years)
 +
| [[Image:Slicer3-6Announcement-v1.png‎|70px|left|This case is complete and up to date for version 3.6.3]]
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|-
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| 43
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| [[Image:RegLib_C43_Thumb1b.png|60px|left|link=Projects:RegistrationLibrary:RegLib_C43]]
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| vertebrae/spine
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| cancer
 +
| rigid
 +
| [https://www.slicer.org/wiki/Modules:PythonSurfaceICPRegistration-Documentation-3.6 Surface Registration]
 +
| CT/3D models
 +
| Analysis of structural integrity change
 +
| [[Image:Slicer3-6Announcement-v1.png‎|70px|left|This case is complete and up to date for version 3.6.4]]
 +
|-
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| 44
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| [[Image:RegLib_C44_Thumb1.png|60px|left|link=Projects:RegistrationLibrary:RegLib_C44]]
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| Pelvis
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| N/A
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| 12+nonrigid
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| [https://www.slicer.org/wiki/Modules:BRAINSFit BRAINSfit]
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| CT
 +
| Analysis of inter-subject shape differences via nonrigid deformation/registration
 +
| [[Image:Slicer3-6Announcement-v1.png‎|70px|left|This case is complete and up to date for version 3.6.3]]
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|-
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| 46
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| [[Image:RegLib_C46_Thumb2.gif|60px|left|link=Projects:RegistrationLibrary:RegLib_C46]]
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| dynamic lung MRI
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|
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| nonrigid
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| [https://www.slicer.org/wiki/Modules:BRAINSFit BRAINSfit]
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| MRI
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| Alignment of serial 2D lung MRI to assess dynamics
 +
| [[Image:Slicer3-6Announcement-v1.png‎|70px|left|This case is complete and up to date for version 3.6.3]]
 
|-
 
|-
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| 3
+
| 47
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| organ
+
| [[Image:RegLib_C12_LiverTumor_MRI.png|60px|left|link=Projects:RegistrationLibrary:RegLib_C47]]
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| path
+
| liver
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| DOF
+
| tumor
−
| toolbox
+
| nonrigid
−
| type
+
| [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.1/Modules/BRAINSFit General Registration (BRAINS)]
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| description
+
| MRI + CT
 +
| Liver tumor ablation: intra-op MRI to intra-op CT.
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| 4[[Image:Slicer41VerifiedIcon.png|50px|verified/updated for Slicer 4.1]]
 
|-
 
|-
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}
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|}
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Latest revision as of 17:06, 10 July 2017

Home < Projects:RegistrationDocumentation:RegLibTable

back to Library Main Page

Registration Library Cases : Sortable Table

to link to the library case page, click on the thumbnail image, to link to the toolbox documentation, click on the link in the toolbox column. To sort the table by a category, click on the sort icon in the column header.
Legend:

  • verified/updated for Slicer 4.1 this case is up to date for version 4.1
  • this case is up to date for version 3.6.3 this case is up to date for version 3.6.3
  • this case is up to date for version 3.6.1 this case is up to date for version 3.6.1
  • these cases are not yet registered / under development these cases are not yet registered / under development or presented as "challenge" cases for which no solution is avail. with the current Slicer tools. Some of these may have solutions with developer/extension modules or methods under development. Please contact the Slicer-User List for inquiries.


id thumbnail structure pathology DOF toolbox modality description status
1 RegLib C01: Tumor change assessment brain meningioma 12 General Registration (BRAINS) MRI T1 change detection, tumor follow-up 4verified/updated for Slicer 4.1
2 RegLib C02: MS multispectral alignment brain multiple sclerosis 12 BRAINSfit MRI T2 FLAIR 4verified/updated for Slicer 4.1
3 RegLib C03: DTI alignment brain tumor nonrigid Fast Nonrigid BSpline DTI align DTI volume with structural reference scan (T2) 4verified/updated for Slicer 4.1
4 RegLib C04: MS Lesion baseline Brain multiple sclerosis 12 BRAINSfit or Expert Automated MRI PD/T2 T1Gd align 2 sets of multi-contrast MRI for lesion change assessment 4verified/updated for Slicer 4.1
5 RegLib 05: Knee MRI subject 1 knee N/A 12 Surface Registration MRI inter-subject alignment of knee MRI for atlas-based segmentation
This case is complete and up to date for version 3.6.1
6 RegLib 06: Breast MRI breast tumor 12 + nonrigid General Registration (BRAINS) MRI post-intervention assessment of breast cancer 4verified/updated for Slicer 4.1
7 RegLib 07: Prostate baseline prostate N/A 12 + nonrigid BRAINSfit MRI change-assessment in post-intervention MRI follow-up 4verified/updated for Slicer 4.1
8 RegLib C08: PET-CT1 abdominal, thoracic path 12 + nonrigid Fast Affine + Fast Nonrigid BSpline or BRAINSfit PET-CT follow-up change assessment from combined whole-body PET-CT pair
This case is complete and up to date for version 3.6.1
9 RegLib C09: T1 SPGR brain infarct 12 + nonrigid BRAINSfit fMRI align fMRI with structural reference (T1) This case is complete and up to date for version 3.6.3
10 Probabilistic Tissue Atlas brain N/A 12 + nonrigid Fast Affine + Fast Nonrigid BSpline MRI align probabilistic tissue atlas with target brain for guiding EM tissue class segmentation This case is complete and up to date for version 3.6.1
11
RegLib C11 AtlasMerge 1.png
 brain none 12 Surface Registration MRI / labelmaps co-register surface models of thalamus for two separate subjects, merging anatomical labelmaps This case is complete and up to date for version 3.6.1
12
RegLib C12 LiverTumor MRI.png
 liver tumor nonrigid General Registration (BRAINS) MRI + CT Liver tumor ablation #1: intra-operative MRI to pre-op CT. 4verified/updated for Slicer 4.1
13
RegLib C13 LiverTumor2 CTpost.png
 liver tumor nonrigid General Registration (BRAINS) CT + MRI Liver tumor ablation : post-operative CT to pre-op CT & MRI 4verified/updated for Slicer 4.1
14
RegLib C14 Thumb PET.png
 brain N/A 12 Expert Automated or BRAINSfit PET + MRI alignment of brain PET to structural MRI, with adjustments to MRI aspect ratio and orientation. This case is complete and up to date for version 3.6.1
15
RegLib C15 Thumb.png
 brain none 6 AC-PC Transform MRI Realigning a single brain MRI along the anterior-posterior commissure line.
This case is complete and up to date for version 3.6.1
16
RegLib C16 Brain0.png
 brain N/A 6 Manual Registration:Transforms MRI manually align FLAIR MRI with anatomical reference T1.
This case is complete and up to date for version 3.6.1
17
RegLib C17 Thumb1.png
 kidney tumor affine BRAINSfit CT + MRI kidney tumor ablation : intra-operative CT to pre-op MRI this case is up to date for version 3.6.3
18
RegLib C18 Thumb1.png
 brain healthy, aging 12 BRAINSfit MRI align brain MRI both across and within exams
This case is complete and up to date for version 3.6.1
19
RegLib C19 thumb all.png
 brain healthy 12 + nonrigid BRAINSfit & Fast nonrigid BSpline MRI multi-stage inter- and intra-subject MRI registration
This case is complete and up to date for version 3.6.1
20 RegLib C20: PET-CT abdominal, thoracic N/A 12 + nonrigid BRAINSfit PET-CT follow-up change assessment from combined whole-body PET-CT pair 4verified/updated for Slicer 4.1
21 RegLib C21: knee MRI knee N/A 12 + nonrigid BRAINSfit MRI inter-subject knee registration to build priors for cartilage segmentation this case is up to date for version 3.6.3
27
RegLib27 DTI.png
 brain tumor 12 + nonrigid General Registration (BRAINS) DTI Alignment of DTI scan to structural reference T1-SPGR for surgical planning (tumor resection) 4verified/updated for Slicer 4.1
28
RegLib C28 Thumb1.png
 vertebra spine cancer 12 General Registration (BRAINS) CT Alignment of in vitro CT of spinal vertebra before and after damage verified/updated for Slicer 4.1
29
RegLib C29 Thumb.png
 brain tumor 12 + nonrigid General Registration (BRAINS) DTI Alignment of DTI scan to structural reference T2/T1-SPGR for surgical planning (tumor resection) 4verified/updated for Slicer 4.1
30
RegLib C30 Thumb3.png
 brain N/A 12 + nonrigid BRAINSfit DTI Alignment of DTI scan to structural reference T1 direct. No T2 available. 4verified/updated for Slicer 4.1
31
RegLib C31 Thumb6.png
 brain TBI 12 + nonrigid BRAINSfit MRI intra- and inter-exam registration of multi-contrast MRI follow-up in TBI
This case is complete and up to date for version 3.6.1
32
RegLib C30 Thumb1.png
 brain N/A 12 + nonrigid BRAINSfit DTI Alignment of DTI scan: inverse direction: aligning structural reference to DTI.
This case is complete and up to date for version 3.6.1
33
RegLib C33 Thumb4.png
 brain N/A 12 + nonrigid General Registration (BRAINS) DTI Alignment of hi-res multi contrast exam, incl. T1Gd FLAIR and DTI to T1 reference 4verified/updated for Slicer 4.1
34
RegLib C34 Thumb2.png
 animal N/A 12 + nonrigid BRAINSfit MRI Alignment of mouse brain MRI atlas or different age
This case is complete and up to date for version 3.6.1
35
RegLibC35 Thumb2.png
 animal N/A 12 + nonrigid Surface Registration MRI Alignment of mouse colon MRI
This is a challenge case / currently unsolved
37
RegLib C37 Thumb1.png
 brain tumor 6+12 + nonrigid BRAINSfit MRI Alignment of intra-subject MRI for therapy assessment
This case is complete and up to date for version 3.6.1
38
RegLib C38 Thumb1.png
 brain TBI 12 + nonrigid General Registration (BRAINS) MRI intra- and inter-exam registration of multi-contrast MRI follow-up in TBI at 3T 4verified/updated for Slicer 4.1
39
RegLib C39 Thumb1.png
 vertebra spine cancer 12 BRAINSfit CT Alignment of in vitro CT of thoracic vertebra before and after damage
This case is complete and up to date for version 3.6.3
40
RegLib C40 Thumb1.png
 wood sample materials science 12+nonrigid BRAINSfit CT Alignment of in micro CT of wood samples to test hygromechanical behavior.
This case is complete and up to date for version 3.6.3
41
RegLib C41 Thumb1.png
 Mouse Brain 12+nonrigid BRAINSfit MRI Alignment of mouse brain MRI for group comparison
This case is complete and up to date for version 3.6.3
42
RegLib C42 Thumb1.png
 Infant Brain Autism 12+nonrigid BRAINSfit MRI Alignment of in longitudinal MRI of infant with autism (2-4 years)
This case is complete and up to date for version 3.6.3
43
RegLib C43 Thumb1b.png
 vertebrae/spine cancer rigid Surface Registration CT/3D models Analysis of structural integrity change
This case is complete and up to date for version 3.6.4
44
RegLib C44 Thumb1.png
 Pelvis N/A 12+nonrigid BRAINSfit CT Analysis of inter-subject shape differences via nonrigid deformation/registration
This case is complete and up to date for version 3.6.3
46
RegLib C46 Thumb2.gif
 dynamic lung MRI nonrigid BRAINSfit MRI Alignment of serial 2D lung MRI to assess dynamics
This case is complete and up to date for version 3.6.3
47
RegLib C12 LiverTumor MRI.png
 liver tumor nonrigid General Registration (BRAINS) MRI + CT Liver tumor ablation: intra-op MRI to intra-op CT. 4verified/updated for Slicer 4.1
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