Projects:RegistrationDocumentation:RegLibTable

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Registration Library Cases : Sortable Table

to link to the library case page, click on the thumbnail image, to link to the toolbox documentation, click on the link in the toolbox column. To sort the table by a category, click on the sort icon in the column header.
Legend:

• this case is up to date for version 3.6.3
  
• this case is up to date for version 3.6.1
  
• these cases are not yet registered / under development or presented as "challenge" cases for which no solution is avail. with the current Slicer tools. Some of these may have solutions with developer/extension modules or methods under development. Please contact the Slicer-User List for inquiries.
  

id	thumbnail	structure	pathology	DOF	toolbox	modality	description	status
1		brain	meningioma	12	General Registration (BRAINS) module	MRI T1	change detection, tumor follow-up	4
2		brain	multiple sclerosis	12	BRAINSfit	MRI T2 FLAIR
3		brain	tumor	nonrigid	Fast Nonrigid BSpline	DTI	align DTI volume with structural reference scan (T2)	4
4		Brain	multiple sclerosis	12	BRAINSfit or Expert Automated	MRI PD/T2 T1Gd	align 2 sets of multi-contrast MRI for lesion change assessment
5		knee	N/A	12	Surface Registration	MRI	inter-subject alignment of knee MRI for atlas-based segmentation
6		breast	tumor	12 + nonrigid	General Registration (BRAINS) module	MRI	post-intervention assessment of breast cancer	4
7		prostate	N/A	12 + nonrigid	BRAINSfit	MRI	change-assessment in post-intervention MRI follow-up
8		abdominal, thoracic	path	12 + nonrigid	Fast Affine + Fast Nonrigid BSpline or BRAINSfit	PET-CT	follow-up change assessment from combined whole-body PET-CT pair
9		brain	infarct	12 + nonrigid	BRAINSfit	fMRI	align fMRI with structural reference (T1)
10		brain	N/A	12 + nonrigid	Fast Affine + Fast Nonrigid BSpline	MRI	align probabilistic tissue atlas with target brain for guiding EM tissue class segmentation
11		brain	none	12	Surface Registration	MRI / labelmaps	co-register surface models of thalamus for two separate subjects, merging anatomical labelmaps
12		liver	tumor	nonrigid	General Registration (BRAINS) module	MRI + CT	Liver tumor ablation #1: intra-operative MRI to pre-op CT.	4
13		liver	tumor	nonrigid	General Registration (BRAINS) module	CT + MRI	Liver tumor ablation : post-operative CT to pre-op CT & MRI	4
14		brain	N/A	12	Expert Automated or BRAINSfit	PET + MRI	alignment of brain PET to structural MRI, with adjustments to MRI aspect ratio and orientation.
15		brain	none	6	AC-PC Transform	MRI	Realigning a single brain MRI along the anterior-posterior commissure line.
16		brain	N/A	6	Manual Registration:Transforms	MRI	manually align FLAIR MRI with anatomical reference T1.
17		kidney	tumor	affine	BRAINSfit	CT + MRI	kidney tumor ablation : intra-operative CT to pre-op MRI
18		brain	healthy, aging	12	BRAINSfit	MRI	align brain MRI both across and within exams
19		brain	healthy	12 + nonrigid	BRAINSfit & Fast nonrigid BSpline	MRI	multi-stage inter- and intra-subject MRI registration
20		abdominal, thoracic	N/A	12 + nonrigid	BRAINSfit	PET-CT	follow-up change assessment from combined whole-body PET-CT pair
21		knee	N/A	12 + nonrigid	BRAINSfit	MRI	inter-subject knee registration to build priors for cartilage segmentation
27		brain	tumor	12 + nonrigid	General Registration (BRAINS) module	DTI	Alignment of DTI scan to structural reference T1-SPGR for surgical planning (tumor resection)
28		vertebra	spine cancer	12	General Registration (BRAINS) module	CT	Alignment of in vitro CT of spinal vertebra before and after damage
29		brain	tumor	12 + nonrigid	General Registration (BRAINS) module	DTI	Alignment of DTI scan to structural reference T2/T1-SPGR for surgical planning (tumor resection)	4
30		brain	N/A	12 + nonrigid	BRAINSfit	DTI	Alignment of DTI scan to structural reference T1 direct. No T2 available.
31		brain	TBI	12 + nonrigid	BRAINSfit	MRI	intra- and inter-exam registration of multi-contrast MRI follow-up in TBI
32		brain	N/A	12 + nonrigid	BRAINSfit	DTI	Alignment of DTI scan: inverse direction: aligning structural reference to DTI.
33		brain	N/A	12 + nonrigid	General Registration (BRAINS) module	DTI	Alignment of hi-res multi contrast exam, incl. T1Gd FLAIR and DTI to T1 reference	4
34		animal	N/A	12 + nonrigid	BRAINSfit	MRI	Alignment of mouse brain MRI atlas or different age
35		animal	N/A	12 + nonrigid	Surface Registration	MRI	Alignment of mouse colon MRI
37		brain	tumor	6+12 + nonrigid	BRAINSfit	MRI	Alignment of intra-subject MRI for therapy assessment
38		brain	TBI	12 + nonrigid	BRAINSfit	MRI	intra- and inter-exam registration of multi-contrast MRI follow-up in TBI at 3T
39		vertebra	spine cancer	12	BRAINSfit	CT	Alignment of in vitro CT of thoracic vertebra before and after damage
40		wood sample	materials science	12+nonrigid	BRAINSfit	CT	Alignment of in micro CT of wood samples to test hygromechanical behavior.
41		Mouse Brain		12+nonrigid	BRAINSfit	MRI	Alignment of mouse brain MRI for group comparison
42		Infant Brain	Autism	12+nonrigid	BRAINSfit	MRI	Alignment of in longitudinal MRI of infant with autism (2-4 years)
43		vertebrae/spine	cancer	rigid	Surface Registration	CT/3D models	Analysis of structural integrity change
44		Pelvis	N/A	12+nonrigid	BRAINSfit	CT	Analysis of inter-subject shape differences via nonrigid deformation/registration
46		dynamic lung MRI		nonrigid	BRAINSfit	MRI	Alignment of serial 2D lung MRI to assess dynamics
47		liver	tumor	nonrigid	General Registration (BRAINS) module	MRI + CT	Liver tumor ablation: intra-op MRI to intra-op CT.	4