Difference between revisions of "Project Week 25"

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__NOTOC__
 
 
Back to [[Events]]
 
Back to [[Events]]
  
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[[image:PW25.png|300px]] [[image:IEL_logo.png|225px]]
 
[[image:PW25.png|300px]] [[image:IEL_logo.png|225px]]
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[[image:PW25Working.JPG|800px]]
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<br>
 
<br>
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=Summary=
 +
 +
The 25th PROJECT WEEK was held on June 26-30, 2017 in Catanzaro Lido, Italy. It recorded 51 registered attendees, who worked on 26 projects. These attendees represented 22 academic sites: Brigham and Women's Hospital, Harvard Medical School (USA), Magna Graecia University (Italy), ASL Vercelli (Italy), Technical University of Munich (Germany), Queen's University (Canada), University of Bremen (Germany), NYU Tandon School of Engineering (USA), Kapteyn Astronomical Institute, University of Groningen (Netherlands), NeuroImaging and Surgical Technologies Lab (Canada), Politecnico di Milano (Italy), Concordia University (Canada), Imperial College (UK), Fraunhofer Institute for Medical Image Computing MEVIS (Germany), Charité Universitätsmedizin, Berlin (Germany), University of Magdeburg (Germany), German Cancer Research Center - DKFZ (Germany), ICM Brain & Spine Institute (France), Federico II di Napoli (Italy), Massachusetts General Hospital, Harvard Medical School (USA), Geneva University Hospitals (Switzerland), Instituto de Astrofísica de Canarias (Spain), Universidad de Las Palmas de Gran Canaria (Spain). 5 companies attended the event: Isomics Inc., (USA), SINTEF (Norway), Kitware Inc., (USA), Ziegler Consult SAS (France), Open Connections GmbH (Germany).
 +
A [[Project_Events#Past_Project_Weeks|summary]] of all past Project Events.
  
 
=Welcome to the web page for the 25th Project Week!=
 
=Welcome to the web page for the 25th Project Week!=
 +
 +
 
It is a pleasure to announce that the 25th Project week will be held in [https://goo.gl/maps/b9CpkFxNyWN2 Catanzaro Lido] (Calabria, Italy) on June 26-30, 2017. This is the first time in Italy for the Slicer Community, and the event is organized in cooperation with [http://www.imagenglab.com ImagEngLab]. Catanzaro Lido is a city on the Ionian Sea, in the middle of Squillace Gulf where, according to the ancient legend, Odysseus started his journey back to Ithaca. Of course bring your swimsuit...the conference room and the hotel are 20 meters far away from the beach!
 
It is a pleasure to announce that the 25th Project week will be held in [https://goo.gl/maps/b9CpkFxNyWN2 Catanzaro Lido] (Calabria, Italy) on June 26-30, 2017. This is the first time in Italy for the Slicer Community, and the event is organized in cooperation with [http://www.imagenglab.com ImagEngLab]. Catanzaro Lido is a city on the Ionian Sea, in the middle of Squillace Gulf where, according to the ancient legend, Odysseus started his journey back to Ithaca. Of course bring your swimsuit...the conference room and the hotel are 20 meters far away from the beach!
  
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*[http://www.imagenglab.com/newsite/mf_spadea/ Maria Francesca Spadea, PhD]
 
*[http://www.imagenglab.com/newsite/mf_spadea/ Maria Francesca Spadea, PhD]
 
*[http://www.imagenglab.com/newsite/paolo_zaffino/ Paolo Zaffino, PhD].
 
*[http://www.imagenglab.com/newsite/paolo_zaffino/ Paolo Zaffino, PhD].
−
 
−
==Videoconferences for preparation==
 
−
  Time: Wednesday 9am EDT (GMT -4), April 15 to June 21, 2017
 
−
  URL: [https://zoom.us/j/879371330 click here] to join the videoconference (zoom is the tool as of May 31)
 
−
 
−
#(Tina Kapur) Hangout #1: April 5 ([[PW25 Hangouts Notes|Notes]])
 
−
#(Steve Pieper) Hangout #2: April 12: Web browser based computing: Dockerized Slicer with remote computing and GPU computing; Cornerstone/LesionTracker OHIF; XTK->AMI (threejs); ePad; vtk.js; QWebEngine;
 
−
#(Andras Lasso) Hangout #3: April 19: Connecting devices such as surgical navigation, ultrasound, 3D Slicer, PLUS, OpenIGTLink, Augmented reality;
 
−
#(Tina Kapur) Hangout #4: April 26: Deep Learning for Detection of Cancer and Instruments;
 
−
#(Simon Drouin) Hangout #5: May 3: Volume Rendering, Augmented Reality, and Virtual Reality. [https://docs.google.com/document/d/1UwdSzjnDm1yEeQ44OEhXWbH6V83Uo1Cd4KngxoyrRdI/edit Notes];
 
−
#(Tina Kapur) Hangout #6: May 10: For new participants: What is project week and how to get the most out of participating in it?
 
−
#(Andrey Fedorov) Hangout #7: May 17:DICOM for Quantitative Imaging and integration with processing applications. ([http://bit.ly/2017NSPW-DICOM notes])
 
−
#(Tina Kapur) Hangout #8: May 24:Discussion of Projects and teams that have been provided on the wiki page by participants, internationalization strategy for Slicer.
 
−
#(Francesca Spadea) Hangout #9: May 31: Review of local logistics -- all registered attendees should join
 
−
#(Tina Kapur) Hangout #10: June 7: Discussion of Projects, Project Pages
 
−
#(TBD) Hangout #11: June 14: Review of Project Pages
 
−
#(Francesca Spadea) Hangout #12: June 21: Review of local logistics -- all registered attendees with questions should join
 
  
 
==Logistics==
 
==Logistics==
−
*'''Dates:''' June 26-30, 2017. Consider staying for one more day (leaving Sunday morning), as a day off in a gorgeous sea place is planned on July 1st. More details in the calendar below.
+
*'''Dates:''' June 26-30, 2017. Details in the calendar below.
−
*'''Location:'''  [http://www.hotelperladelporto.it/en/home-page.aspx Perla del Porto Hotel]
+
*'''Location:'''  [http://www.hotelperladelporto.it/en/home-page.aspx Perla del Porto Hotel]. [mailto:prenotazioni@hotelperladelporto.it Booking]. Subject line: "Slicer Summer Project Week 2017". Special rates: Single room, full bed, 79 € per night (1 person)/ Single room, queen bed 89 € per night (1 person)/ Double room, queen bed 99 € per night (2 people)/Triple room, 110 € (3 people)
−
**[mailto:prenotazioni@hotelperladelporto.it Booking]. Subject line: "Slicer Summer Project Week 2017".  
 
−
***Special rates are:
 
−
****Single room, full bed, 79 € per night (1 person)
 
−
****Single room, queen bed 89 € per night (1 person)
 
−
****Double room, queen bed 99 € per night (2 people)
 
−
****Triple room, 110 € (3 people)
 
 
*'''Registration:'''  To register please visit this [http://www.imagenglab.com/newsite/project-week page]
 
*'''Registration:'''  To register please visit this [http://www.imagenglab.com/newsite/project-week page]
 
*'''Registration Fee:''' 320€ and it includes lunches, coffee breaks and airport connections
 
*'''Registration Fee:''' 320€ and it includes lunches, coffee breaks and airport connections
 
*'''Hotel:''' [http://www.hotelperladelporto.it/en/home-page.aspx Perla del Porto Hotel]. The closest airport is [http://www.lameziaairport.it/english/ Lamezia Terme Airport (IATA: SUF)].
 
*'''Hotel:''' [http://www.hotelperladelporto.it/en/home-page.aspx Perla del Porto Hotel]. The closest airport is [http://www.lameziaairport.it/english/ Lamezia Terme Airport (IATA: SUF)].
−
*'''Transportation from Airport to Hotel:'''  Your registration fee includes ground transportation [https://www.google.com/maps/dir/Lamezia+Terme+International+Airport,+Via+Aeroporto,+88046+Lamezia+Terme+CZ,+Italy/BEST+WESTERN+PLUS+Hotel+Perla+Del+Porto,+Via+Martiri+di+Cefalonia,+64,+88100+Catanzaro,+Italy/@38.868758,16.1564814,10z/data=!3m1!4b1!4m14!4m13!1m5!1m1!1s0x133fe15a3cbed47f:0x544ab120c3de78a6!2m2!1d16.2434017!2d38.9065845!1m5!1m1!1s0x134003d668252a13:0x2989caf676f45a72!2m2!1d16.6312407!2d38.827712!3e0 to/from the hotel and airport].
+
*'''Transportation from Airport to Hotel:'''  Your registration fee includes ground transportation [https://www.google.com/maps/dir/Lamezia+Terme+International+Airport,+Via+Aeroporto,+88046+Lamezia+Terme+CZ,+Italy/BEST+WESTERN+PLUS+Hotel+Perla+Del+Porto,+Via+Martiri+di+Cefalonia,+64,+88100+Catanzaro,+Italy/@38.868758,16.1564814,10z/data=!3m1!4b1!4m14!4m13!1m5!1m1!1s0x133fe15a3cbed47f:0x544ab120c3de78a6!2m2!1d16.2434017!2d38.9065845!1m5!1m1!1s0x134003d668252a13:0x2989caf676f45a72!2m2!1d16.6312407!2d38.827712!3e0 to/from the hotel and airport]. Please fill out this [https://goo.gl/forms/7vmhxZSHy8Z1A62z2 form] to request transportation
−
** Please fill out this [https://goo.gl/forms/7vmhxZSHy8Z1A62z2 form] to request transportation
 
 
*'''Local points of interest (pubs, restaurants, bar):''' [https://www.google.com/maps/d/viewer?mid=1FU63ik9Do3zzP6K2kvLVTtM2at8&ll=38.86221979925013%2C16.44292274999998&z=12 map] (constantly updated)
 
*'''Local points of interest (pubs, restaurants, bar):''' [https://www.google.com/maps/d/viewer?mid=1FU63ik9Do3zzP6K2kvLVTtM2at8&ll=38.86221979925013%2C16.44292274999998&z=12 map] (constantly updated)
  
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iCal (.ics) link: https://calendar.google.com/calendar/ical/kitware.com_sb07i171olac9aavh46ir495c4%40group.calendar.google.com/public/basic.ics
 
iCal (.ics) link: https://calendar.google.com/calendar/ical/kitware.com_sb07i171olac9aavh46ir495c4%40group.calendar.google.com/public/basic.ics
 +
 +
==Breakout Sessions==
 +
*[[Project_Week_25/Neuro-navigation_breakout_session|Neuro-navigation Breakout Session]]
 +
*[[Project_Week_25/Segment_editor_breakout_session|Segment Editor Breakout Session]]
  
 
=Projects=
 
=Projects=
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Please put a brief preliminary title for your project here with some names in parenthesis for potential team members
 
Please put a brief preliminary title for your project here with some names in parenthesis for potential team members
 +
==Deep Learning Applications==
 +
#[[Project_Week_25/NeedleSegmentation |CNN for Needle Segmentation from MRI Images]]
 +
#[[Project_Week_25/CNN_for_multi-plane_prostate_segmentation | CNN for Multi-plane Prostate Segmentation]]
 +
#[[Project_Week_25/CNN for PseudoCT Generation from T1T2 MR|CNN for PseudoCT Generation from T1/T2 MRI]]
 +
#[[Project_Week_25/Breast Segmentation in DCE-MRI via Deep Learning Approaches | Breast Segmentation in DCE-MRI via Deep Learning Approaches]]
  
−
#[[Project_Week_25/NeedleSegmentation | Needle Segmentation]]
+
==Augmented Reality and Virtual Reality==
−
#[[Project_Week_25/Human-Computer_Interaction_under_sterile_conditions |Human-Computer Interaction under Sterile Conditions]]  
+
#[[Project_Week_25/Improving Depth Perception in Interventional Augmented Reality Visualization/Sonification | Improving Depth Perception in Interventional Augmented Reality Visualization/Sonification]]
 
# [[Project_Week_25/Next_Generation_GPU_Volume_Rendering | Next Generation of Volume Rendering in VTK ]]  
 
# [[Project_Week_25/Next_Generation_GPU_Volume_Rendering | Next Generation of Volume Rendering in VTK ]]  
 +
#[[Project_Week_25/Intra-operative deformable_registration_based_on_dense_point_cloud_reconstruction |Intra-operative Deformable Registration Based on Dense Point Cloud Reconstruction for Augmented Reality in Laproscopic Surgery]]
 +
<!--  #[[Project_Week_25/Slicer Export to VR | Slicer Export to VR]] -->
 +
 +
==Navigating Ultrasound==
 
# [[Project_Week_25/Tracked-Ultrasound-Standardization-IV | Tracked Ultrasound Standardization IV: Controlling US Acquisition]]  
 
# [[Project_Week_25/Tracked-Ultrasound-Standardization-IV | Tracked Ultrasound Standardization IV: Controlling US Acquisition]]  
−
#[[Project_Week_25/Intra-operative deformable_registration_based_on_dense_point_cloud_reconstruction |Intra-operative Deformable Registration Based on Dense Point Cloud Reconstruction]]
+
#[[Project_Week_25/Segmentation for improving image registration of preoperative MRI with intraoperative ultrasound images for neuro-navigation |Segmentation for Improving Image Registration of Preoperative MRI with Intraoperative Ultrasound Images for Neuro-navigation]]
−
#[[Project_Week_25/Segmentation for improving image registration of preoperative MRI with intraoperative ultrasound images for neuro-navigation |Segmentation for Improving Image Registration of Preoperative MRI with Intraoperative Ultrasound Images for Neuro-navigation]]
+
==DICOM==
−
#[[Project_Week_25/Deep_Learning_Data_augmentation_for_prostate_segmentation | Deep Learning: Data Augmentation for Prostate Segmentation]]  
+
#[[Project_Week_25/DICOM_for_Quantitative_Imaging_and_Integration_with_Processing_Applications|DICOM for Quantitative Imaging and Integration with Processing Applications]]
−
#DICOM Segmentation Support for Cornerstone / OHIF Viewer (Erik Ziegler, Steve Pieper, Marco Nolden, Tina Kapur)
 
 
#[[Project_Week_25/Conversion of DICOM Single Frame MR to Enhanced Multiframe | Conversion of DICOM Single Frame MR to Enhanced Multiframe]]
 
#[[Project_Week_25/Conversion of DICOM Single Frame MR to Enhanced Multiframe | Conversion of DICOM Single Frame MR to Enhanced Multiframe]]
−
#[[Project_Week_25/Development_and_Evaluation_of_New_AR_Visualization_Techniques_to_Support_Radiological_Interventions | Development and Evaluation of New AR Visualization Techniques to Support Radiological Interventions]]
+
#[[Project_Week_25/DICOM Segmentation Support for Cornerstone and OHIF Viewer | DICOM Segmentation Support for Cornerstone/ OHIF Viewer]]
 +
 
 +
==Chest Image Processing==
 +
#[[Project_Week_25/SlicerCIP_Bronchiectasis  | SlicerCIP: Tool for Quantitative Analysis of Bronchiectasis]]
 +
#[[Project_Week_25/SlicerCIP_ReportsTool  | SlicerCIP: Tool for Creation of Reports for Quantitive Analysis]]
 +
==Platform==
 
#[[Project_Week_25/Interactive_Manipulation_of_Plots_and_Graphs | Interactive Manipulation of Plots and Graphs]]
 
#[[Project_Week_25/Interactive_Manipulation_of_Plots_and_Graphs | Interactive Manipulation of Plots and Graphs]]
−
#Steerable Catheters Path Planner Extension for Brain Surgery Applications (Alberto Favaro, Marlene Pinzi)
+
#[[Project_Week_25/Internationalizing Slicer Modules|Internationalizing Slicer Modules]]  
−
#[[Project_Week_25/Improving Depth Perception in Interventional Augmented Reality Visualization/Sonification | Improving Depth Perception in Interventional Augmented Reality Visualization/Sonification]]
+
#[[Project_Week_25/Interfacing Slicer to Mobile Phone-controlled Sensors|Interfacing Slicer to Mobile Phone-controlled Sensors]]
−
#[[Project_Week_25/DICOM_for_Quantitative_Imaging_and_Integration_with_Processing_Applications|DICOM for Quantitative Imaging and Integration with Processing Applications]]
+
#[[Project_Week_25/Slicer and 3D Printing|Slicer and 3D Printing]]
−
#CNN for PseudoCT Generation from T1/T2 MRI (Giampaolo Pileggi, Paolo Zaffino, Salvatore Scaramuzzino, Maria Francesca Spadea, Gino Gulamhussene, Anneke Meyer)
+
#[[Project_Week_25/Multimodal:  | Multimodal, Multiresolution, Multivolume Data]]
−
#Internationalizing Slicer Modules (Juan Ruiz Alzola)
+
#[[Project_Week_25/Human-Computer_Interaction_under_sterile_conditions |Human-Computer Interaction under Sterile Conditions]]
−
#Interfacing Slicer to Mobile Phone-controlled Sensors (Juan Ruiz Alzola)
+
 
−
#Slicer and 3D Printing (Juan Ruiz Alzola, Mike Halle, Christian Hansen)
+
==Applications Smorgasbord==
−
#Slicer Export to VR (Juan Ruiz Alzola, Mike Halle)
+
#[[Project_Week_25/Steerable Catheters Path Planner Extension for Brain Surgery Applications | Steerable Catheters Path Planner Extension for Brain Surgery Applications]]
−
#[[Project_Week_25/Slice-to-Volume Registration to Support MRI guided Interventions | Slice-to-Volume Registration to Support MRI guided Interventions ]] (Gino Gulamhussene)
+
#[[Project_Week_25/Slice-to-Volume Registration to Support MRI guided Interventions | Slice-to-Volume Registration to Support MRI Guided Interventions ]]  
−
#[[Project_Week_25/SALT_Spatiotemporal_Modeling:  | Slicer SALT Validation: Spatiotemporal Modeling of Subcortical Structures ]] (James Fishbaugh, Guido Gerig)
+
#[[Project_Week_25/Surgical_Planning_In_Stereotaxy | Surgical Planning In Stereotaxy ]]
−
#[[Project_Week_25/Wrist_Kinematics:  | Kinematic Analysis of the Wrist from Dynamic MRI]] (James Fishbaugh, Guido Gerig)
+
#[[Project_Week_25/SALT_Spatiotemporal_Modeling:  | Slicer SALT Validation: Spatiotemporal Modeling of Subcortical Structures ]]  
−
#[[Project_Week_25/SlicerCIP_Bronchiectasis  | SlicerCIP: Tool for Quantitative Analysis of Bronchiectasis]] (Pietro Nardelli, Jorge Onieva, Raúl San José Estépar)
+
#[[Project_Week_25/Wrist_Kinematics:  | Kinematic Analysis of the Wrist from Dynamic MRI]]
−
#[[Project_Week_25/SlicerCIP_ReportsTool | SlicerCIP: Tool for Creation of Reports for Quantitive Analysis]] (Pietro Nardelli, Jorge Onieva, Raúl San José Estépar)
+
#[[Project_Week_25/EBP | External Beam Planning]]
−
#[[Project_Week_25/Multimodal:  | Multimodal, Multiresolution, Multivolume Data]] (Guido Gerig)
 
  
 
=Registrants=
 
=Registrants=
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# Kikinis, Ron :: Brigham and Women's Hospital, Harvard Medical School, USA
 
# Kikinis, Ron :: Brigham and Women's Hospital, Harvard Medical School, USA
−
# Pieper, Steve :: Isomics, Inc., USA
+
# Pieper, Steve :: Isomics Inc., USA
 
# Kapur, Tina :: Brigham and Women's Hospital, Harvard Medical School, USA
 
# Kapur, Tina :: Brigham and Women's Hospital, Harvard Medical School, USA
 
# Spadea, Maria Francesca :: Magna Graecia University, Italy
 
# Spadea, Maria Francesca :: Magna Graecia University, Italy
 
# Zaffino, Paolo :: Magna Graecia University, Italy
 
# Zaffino, Paolo :: Magna Graecia University, Italy
 
# Scaramuzzino, Salvatore :: Magna Graecia University/ASL Vercelli, Italy
 
# Scaramuzzino, Salvatore :: Magna Graecia University/ASL Vercelli, Italy
−
# Pileggi, Giampaolo :: Magna Graecia University, Italy/DKFZ, Germany
+
# Pileggi, Giampaolo :: Magna Graecia University, Italy/German Cancer Research Center (DKFZ), Germany
−
# Rackerseder, Julia :: Technische Universität München, Germany
+
# Rackerseder, Julia :: Technical University of Munich, Germany
 
# Pinter, Csaba :: Queen's University, Canada
 
# Pinter, Csaba :: Queen's University, Canada
 
# Kraß, Scheherazade :: University of Bremen, Germany
 
# Kraß, Scheherazade :: University of Bremen, Germany
 
# Gerig, Guido :: NYU Tandon School of Engineering, USA
 
# Gerig, Guido :: NYU Tandon School of Engineering, USA
−
# Punzo, Davide :: Kapteyn Astronomical Institute, University of Groningen, The Nederlands
+
# Punzo, Davide :: Kapteyn Astronomical Institute, University of Groningen, The Netherlands
 
# Drouin, Simon :: NeuroImaging and Surgical Technologies (NIST) Lab, Canada
 
# Drouin, Simon :: NeuroImaging and Surgical Technologies (NIST) Lab, Canada
 
# Lasso, Andras  :: School of Computing, Queen's University, Canada
 
# Lasso, Andras  :: School of Computing, Queen's University, Canada
Line 117: Line 118:
 
# Onken, Michael  :: Open Connections GmbH, Germany
 
# Onken, Michael  :: Open Connections GmbH, Germany
 
# Pinzi, Marlene  :: Imperial College, UK
 
# Pinzi, Marlene  :: Imperial College, UK
−
# Nitsch, Jennifer :: University Of Bremen, Germany
+
# Nitsch, Jennifer :: University of Bremen, Germany
 
# Moccia, Sara :: Politecnico di Milano, Italy
 
# Moccia, Sara :: Politecnico di Milano, Italy
 
# Black, David :: Fraunhofer Institute for Medical Image Computing MEVIS, Bremen, Germany
 
# Black, David :: Fraunhofer Institute for Medical Image Computing MEVIS, Bremen, Germany
 
# Penzkofer, Tobias :: Charité Universitätsmedizin, Berlin, Germany
 
# Penzkofer, Tobias :: Charité Universitätsmedizin, Berlin, Germany
−
# Hansen, Christian :: Universität Magdeburg, Germany
+
# Hansen, Christian :: University of Magdeburg, Germany
−
# Vegard Solberg, Ole :: Norway
+
# Vegard Solberg, Ole :: SINTEF, Norway
−
# Heinrich, Florian :: Universität Magdeburg, Germany
+
# Heinrich, Florian :: University of Magdeburg, Germany
−
# Mewes, André :: Universität Magdeburg, Germany
+
# Mewes, André :: University of Magdeburg, Germany
−
# Hatscher, Benjamin :: Universität Magdeburg, Germany
+
# Hatscher, Benjamin :: University of Magdeburg, Germany
−
# Hettig, Julian :: Universität Magdeburg, Germany
+
# Hettig, Julian :: University of Magdeburg, Germany
−
# Meyer, Anneke :: Universität Magdeburg, Germany
+
# Meyer, Anneke :: University of Magdeburg, Germany
−
# Gulamhussene, Gino :: Universität Magdeburg, Germany
+
# Gulamhussene, Gino :: University of Magdeburg, Germany
−
# Cassetta, Roberto :: Politecnico di Milano, Italy
+
# Cassetta, Roberto :: Polytechnic University of Milan, Italy
−
# Fillion-Robin, Jean-Christophe :: Kitware, USA
+
# Fillion-Robin, Jean-Christophe :: Kitware Inc., USA
−
# Metzger, Jasmin :: DKFZ, Germany
+
# Metzger, Jasmin :: German Cancer Research Center (DKFZ), Germany
 
# Fishbaugh, James :: NYU Tandon School of Engineering, USA
 
# Fishbaugh, James :: NYU Tandon School of Engineering, USA
−
# Nolden, Marco :: DKFZ, Germany
+
# Nolden, Marco :: German Cancer Research Center (DKFZ), Germany
−
# Jorge Quintero Nehrkorn :: Canary Islands, Spain
+
# Nehrkorn, Jorge Quintero :: Canary Islands, Spain
 +
# Perez Garcia, Fernando :: ICM Brain & Spine Institute, Paris, France
 +
# De Momi, Elena :: Polytechnic University of Milan, Italy
 +
# Piantadosi, Gabriele :: DIETI, Federico II di Napoli, Italy
 +
# Pernelle, Guillaume :: Imperial College, UK
 +
# San Jose, Raul :: Brigham and Women's Hospital, Harvard Medical School, USA
 +
# Nardelli, Pietro :: Brigham and Women's Hospital, Harvard Medical School, USA
 +
# Fernandez Vidal, Sara :: ICM Brain & Spine Institute, Paris, France
 +
# Sharp, Gregory :: Massachusetts General Hospital, Harvard Medical School, USA
 +
# Moiraghi, Alessandro :: Geneva University Hospitals, Switzerland
 +
# Seco, Joao :: German Cancer Research Center (DKFZ), Germany
 +
# Pumar Carreras, Nayra :: Canary Islands, Spain
 +
# Afonso Suarez, Maria Dolores :: Canary Islands, Spain
 +
# Alzola Ruiz, Juan :: Canary Islands, Spain
 +
# Pujol, Sonia :: Brigham and Women's Hospital, Harvard Medical School, USA

Latest revision as of 18:54, 4 December 2017

Home < Project Week 25

Back to Events

A summary of all past Project Events.

PW25.png IEL logo.png

PW25Working.JPG


Summary

The 25th PROJECT WEEK was held on June 26-30, 2017 in Catanzaro Lido, Italy. It recorded 51 registered attendees, who worked on 26 projects. These attendees represented 22 academic sites: Brigham and Women's Hospital, Harvard Medical School (USA), Magna Graecia University (Italy), ASL Vercelli (Italy), Technical University of Munich (Germany), Queen's University (Canada), University of Bremen (Germany), NYU Tandon School of Engineering (USA), Kapteyn Astronomical Institute, University of Groningen (Netherlands), NeuroImaging and Surgical Technologies Lab (Canada), Politecnico di Milano (Italy), Concordia University (Canada), Imperial College (UK), Fraunhofer Institute for Medical Image Computing MEVIS (Germany), Charité Universitätsmedizin, Berlin (Germany), University of Magdeburg (Germany), German Cancer Research Center - DKFZ (Germany), ICM Brain & Spine Institute (France), Federico II di Napoli (Italy), Massachusetts General Hospital, Harvard Medical School (USA), Geneva University Hospitals (Switzerland), Instituto de Astrofísica de Canarias (Spain), Universidad de Las Palmas de Gran Canaria (Spain). 5 companies attended the event: Isomics Inc., (USA), SINTEF (Norway), Kitware Inc., (USA), Ziegler Consult SAS (France), Open Connections GmbH (Germany). A summary of all past Project Events.

Welcome to the web page for the 25th Project Week!

It is a pleasure to announce that the 25th Project week will be held in Catanzaro Lido (Calabria, Italy) on June 26-30, 2017. This is the first time in Italy for the Slicer Community, and the event is organized in cooperation with ImagEngLab. Catanzaro Lido is a city on the Ionian Sea, in the middle of Squillace Gulf where, according to the ancient legend, Odysseus started his journey back to Ithaca. Of course bring your swimsuit...the conference room and the hotel are 20 meters far away from the beach!

This project week is an event endorsed by the MICCAI society.

Please make sure that you are on the NA-MIC Project Week mailing list.

Local Organizing Committee

Logistics

  • Dates: June 26-30, 2017. Details in the calendar below.
  • Location: Perla del Porto Hotel. Booking. Subject line: "Slicer Summer Project Week 2017". Special rates: Single room, full bed, 79 € per night (1 person)/ Single room, queen bed 89 € per night (1 person)/ Double room, queen bed 99 € per night (2 people)/Triple room, 110 € (3 people)
  • Registration: To register please visit this page
  • Registration Fee: 320€ and it includes lunches, coffee breaks and airport connections
  • Hotel: Perla del Porto Hotel. The closest airport is Lamezia Terme Airport (IATA: SUF).
  • Transportation from Airport to Hotel: Your registration fee includes ground transportation to/from the hotel and airport. Please fill out this form to request transportation
  • Local points of interest (pubs, restaurants, bar): map (constantly updated)

Calendar

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iCal (.ics) link: https://calendar.google.com/calendar/ical/kitware.com_sb07i171olac9aavh46ir495c4%40group.calendar.google.com/public/basic.ics

Breakout Sessions

Projects

Please duplicate this template to create a page for your project.

Please put a brief preliminary title for your project here with some names in parenthesis for potential team members

Deep Learning Applications

  1. CNN for Needle Segmentation from MRI Images
  2. CNN for Multi-plane Prostate Segmentation
  3. CNN for PseudoCT Generation from T1/T2 MRI
  4. Breast Segmentation in DCE-MRI via Deep Learning Approaches

Augmented Reality and Virtual Reality

  1. Improving Depth Perception in Interventional Augmented Reality Visualization/Sonification
  2. Next Generation of Volume Rendering in VTK
  3. Intra-operative Deformable Registration Based on Dense Point Cloud Reconstruction for Augmented Reality in Laproscopic Surgery

Navigating Ultrasound

  1. Tracked Ultrasound Standardization IV: Controlling US Acquisition
  2. Segmentation for Improving Image Registration of Preoperative MRI with Intraoperative Ultrasound Images for Neuro-navigation

DICOM

  1. DICOM for Quantitative Imaging and Integration with Processing Applications
  2. Conversion of DICOM Single Frame MR to Enhanced Multiframe
  3. DICOM Segmentation Support for Cornerstone/ OHIF Viewer

Chest Image Processing

  1. SlicerCIP: Tool for Quantitative Analysis of Bronchiectasis
  2. SlicerCIP: Tool for Creation of Reports for Quantitive Analysis

Platform

  1. Interactive Manipulation of Plots and Graphs
  2. Internationalizing Slicer Modules
  3. Interfacing Slicer to Mobile Phone-controlled Sensors
  4. Slicer and 3D Printing
  5. Multimodal, Multiresolution, Multivolume Data
  6. Human-Computer Interaction under Sterile Conditions

Applications Smorgasbord

  1. Steerable Catheters Path Planner Extension for Brain Surgery Applications
  2. Slice-to-Volume Registration to Support MRI Guided Interventions
  3. Surgical Planning In Stereotaxy
  4. Slicer SALT Validation: Spatiotemporal Modeling of Subcortical Structures
  5. Kinematic Analysis of the Wrist from Dynamic MRI
  6. External Beam Planning

Registrants

Do not add your name to this list - it is maintained by the organizers based on your paid registration.  To register, visit this registration site.
  1. Kikinis, Ron :: Brigham and Women's Hospital, Harvard Medical School, USA
  2. Pieper, Steve :: Isomics Inc., USA
  3. Kapur, Tina :: Brigham and Women's Hospital, Harvard Medical School, USA
  4. Spadea, Maria Francesca :: Magna Graecia University, Italy
  5. Zaffino, Paolo :: Magna Graecia University, Italy
  6. Scaramuzzino, Salvatore :: Magna Graecia University/ASL Vercelli, Italy
  7. Pileggi, Giampaolo :: Magna Graecia University, Italy/German Cancer Research Center (DKFZ), Germany
  8. Rackerseder, Julia :: Technical University of Munich, Germany
  9. Pinter, Csaba :: Queen's University, Canada
  10. Kraß, Scheherazade :: University of Bremen, Germany
  11. Gerig, Guido :: NYU Tandon School of Engineering, USA
  12. Punzo, Davide :: Kapteyn Astronomical Institute, University of Groningen, The Netherlands
  13. Drouin, Simon :: NeuroImaging and Surgical Technologies (NIST) Lab, Canada
  14. Lasso, Andras :: School of Computing, Queen's University, Canada
  15. Favaro, Alberto :: Politecnico di Milano, Italy
  16. Leger, Etienne :: Concordia University, Canada
  17. Ziegler, Erik :: Ziegler Consult SAS
  18. Onken, Michael :: Open Connections GmbH, Germany
  19. Pinzi, Marlene :: Imperial College, UK
  20. Nitsch, Jennifer :: University of Bremen, Germany
  21. Moccia, Sara :: Politecnico di Milano, Italy
  22. Black, David :: Fraunhofer Institute for Medical Image Computing MEVIS, Bremen, Germany
  23. Penzkofer, Tobias :: Charité Universitätsmedizin, Berlin, Germany
  24. Hansen, Christian :: University of Magdeburg, Germany
  25. Vegard Solberg, Ole :: SINTEF, Norway
  26. Heinrich, Florian :: University of Magdeburg, Germany
  27. Mewes, André :: University of Magdeburg, Germany
  28. Hatscher, Benjamin :: University of Magdeburg, Germany
  29. Hettig, Julian :: University of Magdeburg, Germany
  30. Meyer, Anneke :: University of Magdeburg, Germany
  31. Gulamhussene, Gino :: University of Magdeburg, Germany
  32. Cassetta, Roberto :: Polytechnic University of Milan, Italy
  33. Fillion-Robin, Jean-Christophe :: Kitware Inc., USA
  34. Metzger, Jasmin :: German Cancer Research Center (DKFZ), Germany
  35. Fishbaugh, James :: NYU Tandon School of Engineering, USA
  36. Nolden, Marco :: German Cancer Research Center (DKFZ), Germany
  37. Nehrkorn, Jorge Quintero :: Canary Islands, Spain
  38. Perez Garcia, Fernando :: ICM Brain & Spine Institute, Paris, France
  39. De Momi, Elena :: Polytechnic University of Milan, Italy
  40. Piantadosi, Gabriele :: DIETI, Federico II di Napoli, Italy
  41. Pernelle, Guillaume :: Imperial College, UK
  42. San Jose, Raul :: Brigham and Women's Hospital, Harvard Medical School, USA
  43. Nardelli, Pietro :: Brigham and Women's Hospital, Harvard Medical School, USA
  44. Fernandez Vidal, Sara :: ICM Brain & Spine Institute, Paris, France
  45. Sharp, Gregory :: Massachusetts General Hospital, Harvard Medical School, USA
  46. Moiraghi, Alessandro :: Geneva University Hospitals, Switzerland
  47. Seco, Joao :: German Cancer Research Center (DKFZ), Germany
  48. Pumar Carreras, Nayra :: Canary Islands, Spain
  49. Afonso Suarez, Maria Dolores :: Canary Islands, Spain
  50. Alzola Ruiz, Juan :: Canary Islands, Spain
  51. Pujol, Sonia :: Brigham and Women's Hospital, Harvard Medical School, USA
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